PDB: 52540 resultsInfo pagesStatus searchChemie searchBIRD

---

3LX1	Crystal Structure analysis of PCNA1 from Thermococcus kodakaraensis tk0535 Descriptor: DNA polymerase sliding clamp 1, SULFATE ION Authors: Ladner, J.E, Kelman, Z, Pan, M. Deposit date: 2010-02-24 Release date: 2011-01-26 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis. Proc.Natl.Acad.Sci.USA, 108, 2011
8IIY	Crystal structure of MBP fused GAS41 YEATS domain in complex with H3K14ac peptide Descriptor: GLYCEROL, Histone H3.1, Maltodextrin-binding protein,YEATS domain-containing protein 4, ... Authors: Kikuchi, M, Umehara, T. Deposit date: 2023-02-24 Release date: 2023-11-01 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.15 Å) Cite: GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain. Proc.Natl.Acad.Sci.USA, 120, 2023
8IIZ	Crystal structure of MBP fused GAS41 YEATS domain in complex with H3K27ac peptide Descriptor: GLYCEROL, Histone H3.1, Maltodextrin-binding protein,YEATS domain-containing protein 4, ... Authors: Kikuchi, M, Umehara, T. Deposit date: 2023-02-24 Release date: 2023-11-01 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.1 Å) Cite: GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain. Proc.Natl.Acad.Sci.USA, 120, 2023
8IJ0	Crystal structure of GAS41 YEATS domain in complex with H3K9ac peptide Descriptor: GLYCEROL, Histone H3.1, PENTAETHYLENE GLYCOL, ... Authors: Kikuchi, M, Umehara, T. Deposit date: 2023-02-24 Release date: 2023-11-01 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.52 Å) Cite: GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain. Proc.Natl.Acad.Sci.USA, 120, 2023
2RLG	NMR structure of the antimicrobial peptide RP-1 bound to SDS micelles Descriptor: antimicrobial peptide RP-1 Authors: Bourbigot, S, Dodd, E, Horwood, C, Booth, V. Deposit date: 2007-07-07 Release date: 2008-07-08 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Antimicrobial peptide RP-1 structure and interactions with anionic versus zwitterionic micelles. Biopolymers, 91, 2009
3S56	HIV-1 protease triple mutants V32I, I47V, V82I with antiviral drug saquinavir Descriptor: (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide, ACETATE ION, Protease Authors: Tie, Y.-F, Wang, Y.-F, Weber, I.T. Deposit date: 2011-05-20 Release date: 2012-03-21 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Critical differences in HIV-1 and HIV-2 protease specificity for clinical inhibitors. Protein Sci., 21, 2012
3S6G	Crystal structures of Seleno-substituted mutant mmNAGS in space group P212121 Descriptor: 1,2-ETHANEDIOL, COENZYME A, MALONATE ION, ... Authors: Shi, D, Li, Y, Cabrera-Luque, J, Jin, Z, Yu, X, Allewell, N.M, Tuchman, M. Deposit date: 2011-05-25 Release date: 2012-04-18 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.6681 Å) Cite: A Novel N-acetylglutamate synthase architecture revealed by the crystal structure of the bifunctional enzyme from Maricaulis maris. Plos One, 6, 2011
3HPG	Visna virus integrase (residues 1-219) in complex with LEDGF IBD: examples of open integrase dimer-dimer interfaces Descriptor: Integrase, PC4 and SFRS1-interacting protein, ZINC ION Authors: Hare, S, Labeja, A, Cherepanov, P. Deposit date: 2009-06-04 Release date: 2009-07-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.28 Å) Cite: Structural basis for functional tetramerization of lentiviral integrase Plos Pathog., 5, 2009
5M64	RNA Polymerase I elongation complex with A49 tandem winged helix domain Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-24 Release date: 2016-12-21 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016
2RLH	NMR structure of the antimicrobial peptide RP-1 bound to DPC micelles Descriptor: antimicrobial peptide RP-1 Authors: Bourbigot, S, Dodd, E, Horwood, C, Booth, V. Deposit date: 2007-07-07 Release date: 2008-07-08 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Antimicrobial peptide RP-1 structure and interactions with anionic versus zwitterionic micelles. Biopolymers, 91, 2009
4I2G	Binary complex of mouse TdT with ssDNA Descriptor: 5'-D(P*AP*AP*AP*AP*A)-3', COBALT (II) ION, DNA nucleotidylexotransferase, ... Authors: Gouge, J, Delarue, M. Deposit date: 2012-11-21 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
3RLF	Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to MgAMPPNP Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, MAGNESIUM ION, Maltose transport system permease protein malF, ... Authors: Oldham, M.L, Chen, J. Deposit date: 2011-04-19 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Snapshots of the maltose transporter during ATP hydrolysis. Proc.Natl.Acad.Sci.USA, 108, 2011
4I2A	Binary complex of mouse TdT with ssDNA in absence of divalent transition metal ion Descriptor: 5'-D(*AP*AP*(BRU)P*AP*A)-3', DNA nucleotidylexotransferase, MAGNESIUM ION, ... Authors: Gouge, J, Delarue, M. Deposit date: 2012-11-21 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
5M5Y	RNA Polymerase I elongation complex 2 Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-23 Release date: 2016-12-21 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016
2UUY	Structure of a tick tryptase inhibitor in complex with bovine trypsin Descriptor: CALCIUM ION, CATIONIC TRYPSIN, CHLORIDE ION, ... Authors: Siebold, C, Paesen, G.C, Harlos, K, Peacey, M.F, Nuttall, P.A, Stuart, D.I. Deposit date: 2007-03-08 Release date: 2007-04-10 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.15 Å) Cite: A Tick Protein with a Modified Kunitz Fold Inhibits Human Tryptase. J.Mol.Biol., 368, 2007
3I9G	Crystal structure of the LT1009 (SONEPCIZUMAB) antibody Fab fragment in complex with sphingosine-1-phosphate Descriptor: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, CALCIUM ION, MAGNESIUM ION, ... Authors: Huxford, T. Deposit date: 2009-07-10 Release date: 2009-09-29 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The crystal structure of sphingosine-1-phosphate in complex with a Fab fragment reveals metal bridging of an antibody and its antigen. Proc.Natl.Acad.Sci.USA, 106, 2009
5M5W	RNA Polymerase I open complex Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-23 Release date: 2016-12-07 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016
4GNW	Crystal structure of nitrophorin 4 triple mutant complex with ammonia Descriptor: AMMONIA, Nitrophorin-4, PHOSPHATE ION, ... Authors: Weichsel, A, Issaian, A.V, Montfort, W.R. Deposit date: 2012-08-17 Release date: 2013-09-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Crystal structures of nitrophorin 4 triple mutant To be Published
2V87	Crystal structure of RAG2-PHD finger in complex with H3R2me2sK4me3 peptide Descriptor: HISTONE H3.2, VDJ RECOMBINATION-ACTIVATING PROTEIN 2, ZINC ION Authors: Ramon-Maiques, S, Yang, W. Deposit date: 2007-08-02 Release date: 2007-12-11 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2. Proc.Natl.Acad.Sci.USA, 104, 2007
5M5X	RNA Polymerase I elongation complex 1 Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-23 Release date: 2016-12-21 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016
7O1E	Crystal structure of PCNA from Chaetomium thermophilum Descriptor: Proliferating cell nuclear antigen Authors: Alphey, M.A, MacNeill, S, Yang, D. Deposit date: 2021-03-29 Release date: 2022-04-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix. Febs J., 290, 2023
2V83	Crystal structure of RAG2-PHD finger in complex with H3K4me3 peptide Descriptor: HISTONE H3, VDJ RECOMBINATION-ACTIVATING PROTEIN 2, ZINC ION Authors: Ramon-Maiques, S, Yang, W. Deposit date: 2007-08-02 Release date: 2007-12-11 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2. Proc.Natl.Acad.Sci.USA, 104, 2007
7O1F	PCNA from Chaetomium thermophilum in complex with PolD4 PIP peptide Descriptor: Peptide fragment from PolD4, Proliferating cell nuclear antigen, SODIUM ION Authors: Alphey, M.A, MacNeill, S, Yang, D. Deposit date: 2021-03-29 Release date: 2022-04-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix. Febs J., 290, 2023
3S70	Crystal structure of active caspase-6 bound with Ac-VEID-CHO solved by As-SAD Descriptor: ACETATE ION, CACODYLATE ION, Caspase-6, ... Authors: Su, X.-D, Liu, X, Wang, X.-J. Deposit date: 2011-05-26 Release date: 2012-04-11 Last modified: 2012-12-12 Method: X-RAY DIFFRACTION (1.625 Å) Cite: Get phases from arsenic anomalous scattering: de novo SAD phasing of two protein structures crystallized in cacodylate buffer Plos One, 6, 2011
2VL1	Crystal structure of beta-alanine synthase from Saccharomyces kluyveri in complex with a gly-gly peptide Descriptor: BETA-ALANINE SYNTHASE, GLYCINE, ZINC ION Authors: Andersen, B, Lundgren, S, Dobritzsch, D, Piskur, J. Deposit date: 2008-01-07 Release date: 2008-05-13 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: A Recruited Protease is Involved in Catabolism of Pyrimidines. J.Mol.Biol., 379, 2008

<576577578579580581582583584585586587588589590591>