PDB: 1732 resultsInfo pagesStatus searchChemie searchBIRD

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9B58	Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 4 Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (3.39 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 633, 2024
9FYO	Lacto-N-biosidase from Trueperella pyogenes Descriptor: NICKEL (II) ION, TrpyGH20, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Vuillemin, M, Siebenhaar, S, Zeuner, B, Morth, J.P. Deposit date: 2024-07-03 Release date: 2024-10-09 Method: X-RAY DIFFRACTION (2.77 Å) Cite: Discovery of Lacto-N-biosidases and a Novel N-Acetyllactosaminidase Activity in the CAZy Family GH20: Functional Diversity and Structural Insights. Chembiochem, 2024
9B5D	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from consensus Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 633, 2024
8ZFK	Caenorhabditis elegans ACR-23 in betaine and monepantel bound state Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Betaine receptor acr-23,Soluble cytochrome b562, ... Authors: Chen, Q.F, Liu, F.L, Li, T.Y, Gong, H.H, Guo, F, Liu, S. Deposit date: 2024-05-08 Release date: 2024-07-31 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: Structural insights into the molecular effects of the anthelmintics monepantel and betaine on the Caenorhabditis elegans acetylcholine receptor ACR-23. Embo J., 43, 2024
9B57	Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 3 Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 633, 2024
9B5C	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - consensus map and model Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 633, 2024
9B59	Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 5 Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 633, 2024
9B5A	Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 6 Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (3.65 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 633, 2024
9B56	Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2 Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 633, 2024
9B5B	Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 7 Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (3.31 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 633, 2024
8ZFL	Caenorhabditis elegans ACR-23 in apo state Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Betaine receptor acr-23,Soluble cytochrome b562 Authors: Chen, Q.F, Liu, F.L, Li, T.Y, Gong, H.H, Guo, F, Liu, S. Deposit date: 2024-05-08 Release date: 2024-07-31 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (2.61 Å) Cite: Structural insights into the molecular effects of the anthelmintics monepantel and betaine on the Caenorhabditis elegans acetylcholine receptor ACR-23. Embo J., 43, 2024
8ZFM	Caenorhabditis elegans ACR-23 in betaine bound state Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Betaine receptor acr-23,Soluble cytochrome b562, ... Authors: Chen, Q.F, Liu, F.L, Li, T.Y, Gong, H.H, Guo, F, Liu, S. Deposit date: 2024-05-08 Release date: 2024-07-31 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Structural insights into the molecular effects of the anthelmintics monepantel and betaine on the Caenorhabditis elegans acetylcholine receptor ACR-23. Embo J., 43, 2024
9FYM	Lacto-N-biosidase from Treponema denticola ATCC 35405 Descriptor: Glycoside hydrolase family 20 catalytic domain-containing protein, IMIDAZOLE, SODIUM ION, ... Authors: Vuillemin, M, Siebenhaar, S, Zeuner, B, Morth, J.P. Deposit date: 2024-07-03 Release date: 2024-10-09 Method: X-RAY DIFFRACTION (1.34 Å) Cite: Discovery of Lacto-N-biosidases and a Novel N-Acetyllactosaminidase Activity in the CAZy Family GH20: Functional Diversity and Structural Insights. Chembiochem, 2024
9GCI	The crystal structure of beta-glucosidase from the thermophilic bacterium Caldicellulosiruptor saccharolyticus determined at 1.47 A resolution Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Chrysina, E.D, Sotiropoulou, A.I. Deposit date: 2024-08-01 Release date: 2024-10-16 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Structural studies of beta-glucosidase from the thermophilic bacterium Caldicellulosiruptor saccharolyticus. Acta Crystallogr D Struct Biol, 80, 2024
8XOR	Cryo-EM structure of the tethered agonist-bound human PAR1-Gq complex Descriptor: CHOLESTEROL, G subunit q (Gi1-Gq chimeric), Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Guo, J, Zhang, Y. Deposit date: 2024-01-02 Release date: 2024-09-18 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of tethered agonism and G protein coupling of protease-activated receptors. Cell Res., 34, 2024
9FE6	Short-chain dehydrogenase/reductase (SDR) from Thermus caliditerrae Descriptor: MAGNESIUM ION, SDR family oxidoreductase Authors: Kapur, B, Nar, H. Deposit date: 2024-05-17 Release date: 2024-06-26 Method: X-RAY DIFFRACTION (1.875 Å) Cite: In silico enzyme screening identifies an SDR ketoreductase from Thermus caliditerrae as an attractive biocatalyst and promising candidate for protein engineering Front Chem Biol, 2024
9FYN	Lacto-N-biosidase from Trueperella pyogenes Descriptor: NICKEL (II) ION, lacto-n-biosidase GH20 Authors: Vuillemin, M, Siebenhaar, S, Zeuner, B, Morth, J.P. Deposit date: 2024-07-03 Release date: 2024-10-09 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Discovery of Lacto-N-biosidases and a Novel N-Acetyllactosaminidase Activity in the CAZy Family GH20: Functional Diversity and Structural Insights. Chembiochem, 2024
8YEQ	Crystal structure of L7/L12 Ribosomal Protein from Mycobacterium tuberculosis Descriptor: 1,2-ETHANEDIOL, Large ribosomal subunit protein bL12 Authors: Panicker, L, Tripathi, P. Deposit date: 2024-02-23 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal Structure of L7 Ribosomal Protein from Mycobacterium tuberculosis To Be Published
8XOS	Cryo-EM structure of the tethered agonist-bound human PAR1-Gi complex Descriptor: CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Guo, J, Zhang, Y. Deposit date: 2024-01-02 Release date: 2024-09-18 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis of tethered agonism and G protein coupling of protease-activated receptors. Cell Res., 34, 2024
2EKE	Structure of a SUMO-binding-motif mimic bound to Smt3p-Ubc9p: conservation of a noncovalent Ubiquitin-like protein-E2 complex as a platform for selective interactions within a SUMO pathway Descriptor: SUMO-conjugating enzyme UBC9, Ubiquitin-like protein SMT3 Authors: Duda, D.M, Schulman, B.A. Deposit date: 2007-03-23 Release date: 2007-05-29 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of a SUMO-binding-motif Mimic Bound to Smt3p-Ubc9p: Conservation of a Non-covalent Ubiquitin-like Protein-E2 Complex as a Platform for Selective Interactions within a SUMO Pathway J.Mol.Biol., 369, 2007
2DYN	DYNAMIN (PLECKSTRIN HOMOLOGY DOMAIN) (DYNPH) Descriptor: DYNAMIN Authors: Timm, D.E. Deposit date: 1997-07-21 Release date: 1997-11-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of the pleckstrin homology domain from dynamin. Nat.Struct.Biol., 1, 1994
2HJE	Crystal structure of Vibrio harveyi LuxQ periplasmic domain Descriptor: Autoinducer 2 sensor kinase/phosphatase luxQ, NICKEL (II) ION Authors: Neiditch, M.B, Kelly, R.C, Hughson, F.M. Deposit date: 2006-06-30 Release date: 2006-09-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Ligand-induced asymmetry in histidine sensor kinase complex regulates quorum sensing. Cell(Cambridge,Mass.), 126, 2006
4C41	Corticosteroid-binding globulin with engineered disulphide bridge between residues 100 and 236 Descriptor: CORTICOSTEROID-BINDING GLOBULIN Authors: Chan, W.L, Zhou, A, Read, R.J. Deposit date: 2013-08-28 Release date: 2014-10-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Towards Engineering Hormone-Binding Globulins as Drug Delivery Agents. Plos One, 9, 2014
2HJ9	Crystal structure of the Autoinducer-2-bound form of Vibrio harveyi LuxP complexed with the periplasmic domain of LuxQ Descriptor: 3A-METHYL-5,6-DIHYDRO-FURO[2,3-D][1,3,2]DIOXABOROLE-2,2,6,6A-TETRAOL, Autoinducer 2 sensor kinase/phosphatase luxQ, Autoinducer 2-binding periplasmic protein luxP Authors: Neiditch, M.B, Hughson, F.M. Deposit date: 2006-06-30 Release date: 2006-09-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Ligand-induced asymmetry in histidine sensor kinase complex regulates quorum sensing. Cell(Cambridge,Mass.), 126, 2006
2F6I	Crystal structure of the ClpP protease catalytic domain from Plasmodium falciparum Descriptor: ATP-dependent CLP protease, putative Authors: Mulichak, A, Loppnau, P, Bray, J, Amani, M, Vedadi, M, Wasney, G, Finerty, P, Sundstrom, M, Weigelt, J, Edwards, A, Arrowsmith, C, Hui, R, Plotnikova, O, Structural Genomics Consortium (SGC) Deposit date: 2005-11-29 Release date: 2005-12-20 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.45 Å) Cite: The Clp chaperones and proteases of the human malaria parasite Plasmodium falciparum. J.Mol.Biol., 404, 2010

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