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8SJS	[3T18] Self-assembling right-handed tensegrity triangle with 18 interjunction base pairs and P63 symmetry Descriptor: DNA (5'-D(*CP*AP*GP*AP*GP*CP*CP*TP*GP*AP*CP*AP*TP*AP*CP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*CP*TP*GP*TP*GP*GP*CP*TP*C)-3'), DNA (5'-D(P*TP*CP*GP*TP*GP*GP*AP*CP*AP*GP*CP*G)-3'), ... Authors: Janowski, J, Vecchioni, S, Sha, R, Ohayon, Y.P. Deposit date: 2023-04-18 Release date: 2024-04-24 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (6.31 Å) Cite: Engineering tertiary chirality in helical biopolymers. Proc.Natl.Acad.Sci.USA, 121, 2024
8SJW	[4T28] Self-assembling right-handed tensegrity triangle with 28 interjunction base pairs and R3 symmetry Descriptor: DNA (28-MER), DNA (5'-D(*GP*AP*AP*CP*TP*GP*CP*CP*TP*GP*AP*AP*TP*TP*AP*CP*TP*GP*AP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*AP*TP*CP*AP*GP*TP*GP*GP*CP*AP*GP*T)-3'), ... Authors: Janowski, J, Vecchioni, S, Sha, R, Ohayon, Y.P. Deposit date: 2023-04-18 Release date: 2024-04-24 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (7.64 Å) Cite: Engineering tertiary chirality in helical biopolymers. Proc.Natl.Acad.Sci.USA, 121, 2024
8SL5	[2T13] Self-assembling left-handed two-turn tensegrity triangle with 13 interjunction base pairs and R3 symmetry Descriptor: DNA (5'-D(*GP*AP*GP*CP*CP*TP*GP*AP*CP*TP*AP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*TP*GP*GP*C)-3'), DNA (5'-D(P*CP*GP*TP*GP*GP*AP*CP*A)-3'), ... Authors: Vecchioni, S, Janowski, J, Sha, R, Ohayon, Y.P. Deposit date: 2023-04-21 Release date: 2024-04-24 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (6.55 Å) Cite: Engineering tertiary chirality in helical biopolymers. Proc.Natl.Acad.Sci.USA, 121, 2024
8SJV	[4T24] Self-assembling left-handed tensegrity triangle with 24 interjunction base pairs and R3 symmetry Descriptor: DNA (5'-D(P*CP*TP*TP*GP*TP*AP*GP*TP*CP*TP*CP*AP*CP*CP*AP*CP*TP*GP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(P*GP*AP*AP*CP*AP*CP*TP*CP*CP*TP*GP*AP*GP*AP*CP*TP*AP*CP*AP*A)-3'), DNA (5'-D(P*GP*AP*CP*AP*TP*CP*AP*CP*AP*GP*TP*GP*GP*AP*CP*TP*AP*CP*AP*AP*G)-3'), ... Authors: Janowski, J, Vecchioni, S, Sha, R, Ohayon, Y.P. Deposit date: 2023-04-18 Release date: 2024-04-24 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (8.59 Å) Cite: Engineering tertiary chirality in helical biopolymers. Proc.Natl.Acad.Sci.USA, 121, 2024
7UI9	Core Mediator-PICearly (Copy A) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Gorbea Colon, J.J, Chen, S.-F, Tsai, K.L, Murakami, K. Deposit date: 2022-03-28 Release date: 2023-02-15 Last modified: 2023-03-08 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural basis of a transcription pre-initiation complex on a divergent promoter. Mol.Cell, 83, 2023
8RBO	Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp conformation Descriptor: DNA-directed RNA polymerase subunit Rpo10, DNA-directed RNA polymerase subunit Rpo11, DNA-directed RNA polymerase subunit Rpo12, ... Authors: Tarau, D.M, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. Deposit date: 2023-12-04 Release date: 2024-04-24 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 52, 2024
3WOD	RNA polymerase-gp39 complex Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S. Deposit date: 2013-12-26 Release date: 2014-03-12 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural basis for promoter specificity switching of RNA polymerase by a phage factor. Genes Dev., 28, 2014
6R25	Structure of LSD2/NPAC-linker/nucleosome core particle complex: Class 3 Descriptor: DNA (147-MER), FLAVIN-ADENINE DINUCLEOTIDE, H2B, ... Authors: Marabelli, C, Pilotto, S, Chittori, S, Subramaniam, S, Mattevi, A. Deposit date: 2019-03-15 Release date: 2019-04-24 Method: ELECTRON MICROSCOPY (4.61 Å) Cite: A Tail-Based Mechanism Drives Nucleosome Demethylation by the LSD2/NPAC Multimeric Complex. Cell Rep, 27, 2019
7UIF	Mediator-PIC Early (Core B) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Gorbea Colon, J.J, Chen, S.-F, Tsai, K.L, Murakami, K. Deposit date: 2022-03-29 Release date: 2023-02-15 Last modified: 2023-03-08 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Structural basis of a transcription pre-initiation complex on a divergent promoter. Mol.Cell, 83, 2023
7CUK	Structure of a GG mismatch-containing duplex formed by G4C2 repeats Descriptor: DNA (11-mer) Authors: Maity, A, Chen, G, Phan, A.T, Winnerdy, F.R. Deposit date: 2020-08-23 Release date: 2021-03-31 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Duplexes Formed by G 4 C 2 Repeats Contain Alternate Slow- and Fast-Flipping G·G Base Pairs. Biochemistry, 60, 2021
7YPB	Cryo-EM structure of Escherichia coli release complex of transcription termination (TTC-release) Descriptor: DNA (31-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: You, L.L, Zhang, Y. Deposit date: 2022-08-03 Release date: 2022-11-16 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.48 Å) Cite: Structural basis for intrinsic transcription termination. Nature, 613, 2023
6GYK	Structure of a yeast closed complex (core CC1) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P. Deposit date: 2018-06-30 Release date: 2018-12-05 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (5.1 Å) Cite: Promoter Distortion and Opening in the RNA Polymerase II Cleft. Mol. Cell, 73, 2019
3DNV	MDT Protein Descriptor: DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3'), HTH-type transcriptional regulator hipB, Protein hipA, ... Authors: schumacher, M.A. Deposit date: 2008-07-02 Release date: 2009-01-27 Last modified: 2023-04-05 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB. Science, 323, 2009
6NSN	TetR family transcriptional regulator CifR C99T-C181R Cysteines mutant complexed with 26bp double-strand operator DNA Descriptor: DNA (26-MER), GLYCEROL, TetR family transcriptional regulator CifR Authors: He, S, Simard, A.R, Madden, D.R. Deposit date: 2019-01-25 Release date: 2020-01-29 Last modified: 2024-07-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Molecular basis for the transcriptional regulation of an epoxide-based virulence circuit in Pseudomonas aeruginosa Biorxiv, 2024
5DUI	Identification of a new FoxO1 binding site that precludes CREB binding at the glucose-6-phosphatase catalytic subunit gene promoter Descriptor: DNA (5'-D(*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*TP*AP*AP*AP*AP*TP*AP*GP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*CP*TP*AP*TP*TP*TP*TP*AP*CP*GP*TP*AP*AP*AP*TP*CP*A)-3'), Forkhead box protein O1 Authors: Singh, P, Endrizzi, J.A, Chi, Y.-I. Deposit date: 2015-09-18 Release date: 2016-09-21 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.306 Å) Cite: Crystal structures reveal a new and novel FoxO1 binding site within the human glucose-6-phosphatase catalytic subunit 1 gene promoter. J. Struct. Biol., 198, 2017
3LSP	Crystal Structure of DesT bound to desCB promoter and oleoyl-CoA Descriptor: DNA (5'-D(*TP*CP*AP*AP*TP*CP*GP*AP*GP*TP*CP*AP*AP*CP*AP*AP*GP*CP*GP*TP*TP*CP*AP*CP*TP*GP*AP*TP*GP*TP*A)-3'), DNA (5'-D(*TP*TP*AP*CP*AP*TP*CP*AP*GP*TP*GP*AP*AP*CP*GP*CP*TP*TP*GP*TP*TP*GP*AP*CP*TP*CP*GP*AP*TP*TP*G)-3'), DesT, ... Authors: Miller, D.J, White, S.W. Deposit date: 2010-02-12 Release date: 2010-08-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Structural basis for the transcriptional regulation of membrane lipid homeostasis. Nat.Struct.Mol.Biol., 17, 2010
6E0C	Cryo-EM structure of the CENP-A nucleosome (W601) in complex with a single chain antibody fragment Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Yadav, K.N.S, Zhou, B.-R. Deposit date: 2018-07-06 Release date: 2019-05-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment. Nat Commun, 10, 2019
4RB1	Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-E. coli Fur box Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*AP*TP*GP*AP*TP*AP*AP*TP*CP*AP*TP*TP*AP*TP*CP*CP*GP*C)-3'), DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family), MANGANESE (II) ION Authors: Deng, Z, Chen, Z. Deposit date: 2014-09-12 Release date: 2015-07-15 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator. Nat Commun, 6
4RB3	Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator Descriptor: DNA (25-MER), DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family), MANGANESE (II) ION, ... Authors: Deng, Z, Chen, Z. Deposit date: 2014-09-12 Release date: 2015-07-15 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator. Nat Commun, 6
8E74	Mycobacterium tuberculosis RNAP paused elongation complex with NusG transcription factor Descriptor: DNA (54-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Delbeau, M, Darst, S.A, Campbell, E.A. Deposit date: 2022-08-23 Release date: 2023-03-22 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: Structural and functional basis of the universal transcription factor NusG pro-pausing activity in Mycobacterium tuberculosis. Mol.Cell, 83, 2023
8E82	Mycobacterium tuberculosis RNAP elongation complex with NusG transcription factor Descriptor: DNA (54-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Delbeau, M, Darst, S.A, Campbell, E.A. Deposit date: 2022-08-25 Release date: 2023-03-22 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: Structural and functional basis of the universal transcription factor NusG pro-pausing activity in Mycobacterium tuberculosis. Mol.Cell, 83, 2023
8E79	Mycobacterium tuberculosis RNAP paused elongation complex with Escherichia coli NusG transcription factor Descriptor: DNA (54-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Delbeau, M, Darst, S.A, Campbell, E.A. Deposit date: 2022-08-23 Release date: 2023-03-22 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (3.71 Å) Cite: Structural and functional basis of the universal transcription factor NusG pro-pausing activity in Mycobacterium tuberculosis. Mol.Cell, 83, 2023
4RB2	Crystal structure of Magnetospirillum gryphiswaldense MSR-1 SeMet-Fur-Mn2+-feoAB1 operator Descriptor: DNA (25-MER), DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family), MANGANESE (II) ION Authors: Deng, Z, Chen, Z. Deposit date: 2014-09-12 Release date: 2015-07-15 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator. Nat Commun, 6
5C3E	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. Deposit date: 2015-06-17 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
4BBR	Structure of RNA polymerase II-TFIIB complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Sainsbury, S, Niesser, J, Cramer, P. Deposit date: 2012-09-27 Release date: 2012-11-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013

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