PDB: 92137 resultsInfo pagesStatus searchChemie searchBIRD

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6VZN	Crystal structure of human PPARgamma ligand binding domain Y473E mutant Descriptor: Peroxisome proliferator-activated receptor gamma Authors: Shang, J, Kojetin, D.J. Deposit date: 2020-02-28 Release date: 2021-03-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure, 29, 2021
6VZL	Crystal structure of human PPARgamma ligand binding domain in complex with GW1929 Descriptor: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid, Peroxisome proliferator-activated receptor gamma Authors: Shang, J, Kojetin, D.J. Deposit date: 2020-02-28 Release date: 2021-03-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure, 29, 2021
2C5C	Shiga-like toxin 1 B subunit complexed with a bivalent inhibitor Descriptor: DIETHYL PROPANE-1,3-DIYLBISCARBAMATE, SHIGA-LIKE TOXIN 1 B SUBUNIT, SULFATE ION, ... Authors: Dodd, R.B, Read, R.J. Deposit date: 2005-10-26 Release date: 2006-11-27 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.94 Å) Cite: Extensive Cross-Linking of the Shiga-Like Toxin 1 B Subunit by a Bivalent Ligand To be Published
5CW0	Investigation of RNA structure in satellite panicum mosaic virus Descriptor: Coat protein Authors: Makino, D.L, Day, J, Larson, S.B, McPherson, A. Deposit date: 2015-07-27 Release date: 2017-10-11 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (4.6 Å) Cite: Investigation of RNA structure in satellite panicum mosaic virus. Virology, 351, 2006
5Q1B	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 4-{[(2S)-2-cyclohexyl-2-{5,6-difluoro-2-[4-(1,3-thiazol-2-yl)phenyl]-1H-benzimidazol-1-yl}acetyl]amino}benzoic acid, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0I	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 2-[(3,4-dimethoxyphenyl)-(4-methylphenyl)sulfonyl-amino]-N-(2,4-dimethylpentan-3-yl)ethanamide, Bile acid receptor, COACTIVATOR PEPTIDE PGC-1A PPAR GAMMA COACTIVATOR Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0Q	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3, ethyl 4-({2-phenyl-5-[(thiophen-2-yl)sulfonyl]-4,5,6,7-tetrahydro-2H-pyrazolo[4,3-c]pyridine-3-carbonyl}amino)benzoate Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.6 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0M	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 5-{[(3beta,5beta,14beta,17alpha)-3-hydroxy-24-oxocholan-24-yl]amino}benzene-1,3-dicarboxylic acid, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.2 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q13	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: (2S)-2-[6-chloro-2-(4-chlorophenyl)-5-fluoro-1H-benzimidazol-1-yl]-N-cyclohexyl-2-[(2S)-oxan-2-yl]acetamide, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0W	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 4-({5-bromo-1'-[(2-chlorophenyl)sulfonyl]-2-oxospiro[indole-3,4'-piperidin]-1(2H)-yl}methyl)benzoic acid, Bile acid receptor, cDNA FLJ76652, ... Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q12	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 2-(2,6-difluorophenyl)-N-(2,6-dimethylphenyl)-5-methylimidazo[1,2-a]pyridin-3-amine, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q1G	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: (2E)-N-cyclohexyl-N-(cyclohexylcarbamoyl)-3-(4-fluorophenyl)prop-2-enamide, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0O	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: (2S)-2-{2-[4-(benzenecarbonyl)phenyl]-1H-benzimidazol-1-yl}-N,2-dicyclohexylacetamide, Bile acid receptor, CHLORIDE ION, ... Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q14	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 4-{(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylethoxy}-3-fluorobenzoic acid, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2021-11-17 Method: X-RAY DIFFRACTION (1.85 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q1E	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.85 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0U	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3, trans-4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)cyclohexyl hydrogen sulfate Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q1C	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: (2S)-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(trans-4-hydroxycyclohexyl)acetamide, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0L	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: (2S)-N,2-dicyclohexyl-2-{2-[4-(hydroxymethyl)phenyl]-1H-benzimidazol-1-yl}acetamide, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0Y	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: (2S)-N,2-dicyclohexyl-2-{5,6-difluoro-2-[6-(1H-pyrazol-1-yl)pyridin-3-yl]-1H-benzimidazol-1-yl}acetamide, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2021-11-17 Method: X-RAY DIFFRACTION (2.2 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q1F	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3, trans-4-({(2S)-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5-fluoro-1H-benzimidazol-1-yl]acetyl}amino)cyclohexane-1-carboxylic acid Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0S	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: (2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(2-cyanophenyl)-2-cyclohexylacetamide, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.5 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q17	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 4-({5-bromo-2-oxo-1'-[(thiophen-2-yl)sulfonyl]spiro[indole-3,4'-piperidin]-1(2H)-yl}methyl)benzoic acid, Bile acid receptor, Nuclear receptor coactivator peptide SRC2 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q1H	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: (2S)-N,2-dicyclohexyl-2-{2-[4-(1H-tetrazol-5-yl)phenyl]-1H-benzimidazol-1-yl}acetamide, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2021-11-17 Method: X-RAY DIFFRACTION (2.2 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q0N	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: 3-chloro-4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)benzoic acid, Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3 Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2021-11-17 Method: X-RAY DIFFRACTION (2.4 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018
5Q10	Ligand binding to FARNESOID-X-RECEPTOR Descriptor: Bile acid receptor, COACTIVATOR PEPTIDE SRC-1 HD3, N-[3-(acetylamino)phenyl]-4-chloro-N-[(1S)-1-cyclohexyl-2-(cyclohexylamino)-2-oxoethyl]benzamide Authors: Rudolph, M.G, Benz, J, Burger, D, Thoma, R, Ruf, A, Joseph, C, Kuhn, B, Shao, C, Yang, H, Burley, S.K. Deposit date: 2017-05-31 Release date: 2017-07-05 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.2 Å) Cite: D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des., 32, 2018

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