PDB: 125 resultsInfo pagesStatus searchChemie searchBIRD

---

3PWE	Crystal structure of the E. coli beta clamp mutant R103C, I305C, C260S, C333S at 2.2A resolution Descriptor: DNA polymerase III subunit beta Authors: Marzahn, M.R, Robbins, A.H, McKenna, R, Bloom, L.B. Deposit date: 2010-12-08 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.199 Å) Cite: The E. coli clamp loader can actively pry open the beta-sliding clamp J.Biol.Chem., 286, 2011
6AMQ	Crystal structure of the DNA polymerase III subunit beta from Enterobacter cloacae Descriptor: DNA polymerase III subunit beta, SULFATE ION Authors: McGrath, A.E, Oakley, A.J. Deposit date: 2017-08-11 Release date: 2017-11-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.67 Å) Cite: Crystal structures and biochemical characterization of DNA sliding clamps from three Gram-negative bacterial pathogens. J. Struct. Biol., 204, 2018
3Q4J	Structure of a small peptide ligand bound to E.coli DNA sliding clamp Descriptor: DNA polymerase III subunit beta, peptide ligand Authors: Wolff, P, Olieric, V, Briand, J.P, Chaloin, O, Dejaegere, A, Dumas, P, Ennifar, E, Guichard, G, Wagner, J, Burnouf, D. Deposit date: 2010-12-23 Release date: 2011-12-28 Last modified: 2013-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J.Med.Chem., 54, 2011
3RB9	Crystal structure of the M. tuberculosis beta clamp Descriptor: DNA polymerase III subunit beta Authors: Kukshal, V, Ramachandran, R. Deposit date: 2011-03-29 Release date: 2012-04-04 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3 Å) Cite: M. tuberculosis Sliding beta-Clamp Does Not Interact Directly with the NAD(+)-Dependent DNA Ligase Plos One, 7, 2012
3QSB	Structure of E. coli polIIIbeta with (Z)-5-(1-((4'-Fluorobiphenyl-4-yl)methoxyimino)butyl)-2,2-dimethyl-4,6-dioxocyclohexanecarbonitrile Descriptor: (1R,5R)-5-{(1Z)-N-[(4'-fluorobiphenyl-4-yl)methoxy]butanimidoyl}-2,2-dimethyl-4,6-dioxocyclohexanecarbonitrile, DNA polymerase III subunit beta Authors: Wijffels, G, Johnson, W.M, Oakley, A.J, Turner, K, Epa, V.C, Briscoe, S.J, Polley, M, Liepa, A.J, Hofmann, A, Buchardt, J, Christensen, C, Prosselkov, P, Dalrymple, B.P, Alewood, P.F, Jennings, P.A, Dixon, N.E, Winkler, D.A. Deposit date: 2011-02-20 Release date: 2011-06-08 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Binding inhibitors of the bacterial sliding clamp by design J.Med.Chem., 54, 2011
6DJK	Structure of DNA polymerase III subunit beta from Rickettsia typhi in complex with a natural product Descriptor: 1,2-ETHANEDIOL, ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY, Beta sliding clamp, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-05-25 Release date: 2019-05-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure of DNA polymerase III subunit beta from Rickettsia typhi in complex with a natural product to be published
3T0P	Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2011-07-20 Release date: 2011-08-10 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution To be published
6D46	Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Rickettsia typhi str. Wilmington Descriptor: Beta sliding clamp, CHLORIDE ION, TETRAETHYLENE GLYCOL Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-04-17 Release date: 2018-05-02 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Rickettsia typhi str. Wilmington To Be Published
6DEG	Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9 Descriptor: Beta sliding clamp Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-05-11 Release date: 2018-05-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9 To Be Published
6D47	Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Mycobacterium marinum Descriptor: Beta sliding clamp Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-04-17 Release date: 2018-05-02 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Mycobacterium marinum To Be Published
8VAN	Structure of the E. coli clamp loader bound to the beta clamp in an Initial-Binding conformation Descriptor: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... Authors: Landeck, J.T, Pajak, J, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (7.7 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAS	Structure of the E. coli clamp loader bound to the beta clamp in an Altered-Collar conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... Authors: Landeck, J.T, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAQ	Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA1 conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... Authors: Landeck, J.T, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAL	Structure of the E. coli clamp loader bound to the beta clamp in a Open-DNAp/t conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... Authors: Landeck, J.T, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAT	Structure of the E. coli clamp loader bound to the beta clamp in a Open-RNAp/t conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... Authors: Landeck, J.T, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAM	Structure of the E. coli clamp loader bound to the beta clamp in a Semi-Open conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... Authors: Landeck, J.T, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAR	Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA2 conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... Authors: Landeck, J.T, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAP	Structure of the E. coli clamp loader bound to the beta clamp in a Fully-Open conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... Authors: Landeck, J.T, Kelch, B.A. Deposit date: 2023-12-11 Release date: 2024-03-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3 Å) Cite: Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8DKD	Sliding clamp from M. thermoresistibile Descriptor: Beta sliding clamp Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-07-05 Release date: 2023-01-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Interaction of sliding clamp with mycobacterial polymerases To Be Published
8DK9	Sliding-clamp-DinX peptide Descriptor: ACETYL GROUP, AMINO GROUP, Beta sliding clamp, ... Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-07-05 Release date: 2023-01-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Interaction of sliding clamp with mycobacterial polymerases To Be Published
8DJQ	Sliding-clamp-DnaE1 peptide Descriptor: ACETYL GROUP, AMINO GROUP, Beta sliding clamp, ... Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-07-01 Release date: 2023-01-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Interaction of the sliding clamp with mycobacterial polymerases To Be Published
8DJ6	Sliding-clamp-ImuB peptide Descriptor: ACETATE ION, Beta sliding clamp, FORMIC ACID, ... Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-06-30 Release date: 2023-07-26 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Interaction of sliding clamp with mycobacterial polymerases To Be Published
8DT6	Crystal Structure of DNA Polymerase III beta subunit from Elizabethkingia anophelis Descriptor: Beta sliding clamp, CALCIUM ION, CHLORIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-07-25 Release date: 2022-08-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal Structure of DNA Polymerase III beta subunit from Elizabethkingia anophelis to be published
8CIY	DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Cyclohexyl-Griselimycin. Descriptor: ACETATE ION, Beta sliding clamp, CALCIUM ION, ... Authors: Fu, C, Liu, Y, Walt, C, Bader, C, Rasheed, S, Lukat, P, Neuber, M, Blankenfeldt, W, Kalinina, O, Mueller, R. Deposit date: 2023-02-11 Release date: 2023-11-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nat Commun, 15, 2024
8CIX	DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Griselimycin. Descriptor: ACETATE ION, Beta sliding clamp, CALCIUM ION, ... Authors: Fu, C, Liu, Y, Walt, C, Bader, C, Rasheed, S, Lukat, P, Neuber, M, Blankenfeldt, W, Kalinina, O, Mueller, R. Deposit date: 2023-02-11 Release date: 2023-11-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nat Commun, 15, 2024

<12345>