PDB: 1510 resultsInfo pagesStatus searchChemie searchBIRD

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3VVA	Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with ascofuranone derivative Descriptor: 3-chloro-4,6-dihydroxy-5-[(2E,6E,8S)-8-hydroxy-3,7-dimethylnona-2,6-dien-1-yl]-2-methylbenzaldehyde, Alternative oxidase, mitochondrial, ... Authors: Shiba, T, Kido, Y, Sakamoto, K, Inaoka, D.K, Tsuge, C, Tatsumi, R, Balogun, E.O, Nara, T, Aoki, T, Honma, T, Tanaka, A, Inoue, M, Matsuoka, S, Saimoto, H, Moore, A.L, Harada, S, Kita, K. Deposit date: 2012-07-17 Release date: 2013-03-13 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Structure of the trypanosome cyanide-insensitive alternative oxidase Proc.Natl.Acad.Sci.USA, 110, 2013
3VM8	Crystal structure of the human APOBEC3C having HIV-1 Vif-binding interface Descriptor: Probable DNA dC->dU-editing enzyme APOBEC-3C, ZINC ION Authors: Kitamura, S, Suzuki, A, Watanabe, N, Iwatani, Y. Deposit date: 2011-12-09 Release date: 2012-10-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of the human APOBEC3C having HIV-1 Vif-binding interface To be Published
3VPB	ArgX from Sulfolobus tokodaii complexed with LysW/Glu/ADP/Mg/Zn/Sulfate Descriptor: ADENOSINE-5'-DIPHOSPHATE, Alpha-aminoadipate carrier protein lysW, GLUTAMIC ACID, ... Authors: Tomita, T, Ouchi, T, Kuzuyama, T, Nishiyama, M. Deposit date: 2012-02-29 Release date: 2013-02-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus Nat.Chem.Biol., 9, 2013
3VMM	Crystal structure of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis Descriptor: (2S)-3-[(S)-[(1R)-1-aminoethyl](phosphonooxy)phosphoryl]-2-benzylpropanoic acid, ADENOSINE-5'-DIPHOSPHATE, Alanine-anticapsin ligase BacD, ... Authors: Shomura, Y, Higuchi, Y. Deposit date: 2011-12-14 Release date: 2012-04-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and enzymatic characterization of BacD, an l-amino acid dipeptide ligase from Bacillus subtilis Protein Sci., 2012
2DDT	Crystal structure of sphingomyelinase from Bacillus cereus with magnesium ion Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, SULFATE ION, ... Authors: Ago, H, Oda, M, Tsuge, H, Katunuma, N, Miyano, M, Sakurai, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-02-02 Release date: 2006-05-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis of the sphingomyelin phosphodiesterase activity in neutral sphingomyelinase from Bacillus cereus. J.Biol.Chem., 281, 2006
3VXW	Crystal structure of Saccharomyces cerevisiae Atg8 complexed with Atg32 AIM Descriptor: Autophagy-related protein 8, Peptide from Autophagy-related protein 32, SULFATE ION Authors: Noda, N.N, Inagaki, F. Deposit date: 2012-09-21 Release date: 2012-10-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy J.Biol.Chem., 287, 2012
3VOC	Crystal structure of the catalytic domain of beta-amylase from paenibacillus polymyxa Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta/alpha-amylase, ... Authors: Nishimura, S, Fujioka, T, Nakaniwa, T, Tada, T. Deposit date: 2012-01-21 Release date: 2013-02-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural analysis by X-ray crystallography and small-angle scattering of the multi-domain beta-amylase from Paenibacillus polymyxa To be Published
2BJK	Crystal Analysis of 1-Pyrroline-5-Carboxylate Dehydrogenase from Thermus with bound NAD and citrate. Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, ... Authors: Inagaki, E, Tahirov, T.H. Deposit date: 2005-02-04 Release date: 2006-03-09 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal Structure of Thermus Thermophilus Delta(1)- Pyrroline-5-Carboxylate Dehydrogenase. J.Mol.Biol., 362, 2006
3VPD	LysX from Thermus thermophilus complexed with AMP-PNP Descriptor: CITRIC ACID, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Ribosomal protein S6 modification protein, ... Authors: Tomita, T, Ouchi, T, Kuzuyama, T, Nishiyama, M. Deposit date: 2012-02-29 Release date: 2013-02-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus. Nat.Chem.Biol., 9, 2013
3VV9	Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei Descriptor: Alternative oxidase, mitochondrial, FE (III) ION, ... Authors: Shiba, T, Kido, Y, Sakamoto, K, Inaoka, D.K, Tsuge, C, Tatsumi, R, Balogun, E.O, Nara, T, Aoki, T, Honma, T, Tanaka, A, Inoue, M, Matsuoka, S, Saimoto, H, Moore, A.L, Harada, S, Kita, K. Deposit date: 2012-07-17 Release date: 2013-03-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structure of the trypanosome cyanide-insensitive alternative oxidase Proc.Natl.Acad.Sci.USA, 110, 2013
3W0C	Crystal Structure Analysis of Vitamin D receptor Descriptor: (4S)-4-hydroxy-5-[2-methyl-4-(3-{3-methyl-4-[(1E)-4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-en-1-yl]phenyl}pentan-3-yl)phenoxy]pentanoic acid, Vitamin D3 receptor Authors: Itoh, S, Iijima, S. Deposit date: 2012-10-29 Release date: 2013-11-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: structure analysis of vitamin D receptor To be Published
3W0A	Crystal Structure Analysis of Vitamin D receptor Descriptor: (4S)-4-hydroxy-5-[2-methyl-4-(3-{3-methyl-4-[4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-yn-1-yl]phenyl}pentan-3-yl)phenoxy]pentanoic acid, Vitamin D3 receptor Authors: Itoh, S, Iijima, S. Deposit date: 2012-10-25 Release date: 2013-11-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: structure analysis of vitamin D3 receptor To be Published
3W0Y	Crystal Structure Analysis of Vitamin D receptor Descriptor: Vitamin D3 receptor, [3-fluoro-2'-methyl-4'-(3-{3-methyl-4-[(1E)-4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-en-1-yl]phenyl}pentan-3-yl)biphenyl-4-yl]acetic acid Authors: Itoh, S, Iijima, S. Deposit date: 2012-11-05 Release date: 2013-11-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Crystal Structure Analysis of Vitamin D receptor TO BE PUBLISHED
3WIF	Crystal structure of anti-prostaglandin E2 Fab fragment 9Cl-PGF2beta complex Descriptor: (Z)-7-[(1R,2R,3R,5R)-5-chloranyl-3-oxidanyl-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid, mAb Fab H fragment, mAb Fab L fragment Authors: Sugahara, M, Ago, H, Saino, H, Miyano, M. Deposit date: 2013-09-12 Release date: 2014-09-17 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2 To be Published
3WE6	Crystal structure of anti-Prostaglandin E2 Fab fragment Descriptor: ISOPROPYL ALCOHOL, mAb Fab H fragment, mAb Fab L fragment Authors: Sugahara, M, Ago, H, Saino, H, Miyano, M. Deposit date: 2013-07-01 Release date: 2014-07-02 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2 To be Published
2BHQ	Crystal Analysis of 1-Pyrroline-5-Carboxylate Dehydrogenase from Thermus with bound product glutamate. Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, ... Authors: Inagaki, E, Tahirov, T.H. Deposit date: 2005-01-16 Release date: 2006-03-09 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal Structure of Thermus Thermophilus Delta(1)- Pyrroline-5-Carboxylate Dehydrogenase. J.Mol.Biol., 362, 2006
3WWQ	Crystal structure of FAAP20 UBZ domain in complex with Lys63-linked diubiquitin Descriptor: Fanconi anemia-associated protein of 20 kDa, Ubiquitin, ZINC ION Authors: Sato, Y, Fukai, S. Deposit date: 2014-06-23 Release date: 2015-05-13 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Basis for Ubiquitin Recognition by Ubiquitin-Binding Zinc Finger of FAAP20 Plos One, 10, 2015
3WFH	Crystal structure of anti-Prostaglandin E2 Fab fragment PGE2 complex Descriptor: (Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid, mAb Fab H fragment, mAb Fab L fragment Authors: Sugahara, M, Ago, H, Saino, H, Miyano, M. Deposit date: 2013-07-19 Release date: 2014-07-23 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2 To be Published
3WA4	Grb2 SH2 domain/CD28-derived peptide complex Descriptor: ACETIC ACID, CADMIUM ION, Growth factor receptor-bound protein 2, ... Authors: Higo, K, Oda, M, Ito, N. Deposit date: 2013-04-23 Release date: 2014-02-26 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.35 Å) Cite: High Resolution Crystal Structure of the Grb2 SH2 Domain with a Phosphopeptide Derived from CD28 Plos One, 8, 2013
2BHP	Crystal Analysis of 1-Pyrroline-5-Carboxylate Dehydrogenase from Thermus with bound NAD. Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, ... Authors: Inagaki, E, Tahirov, T.H. Deposit date: 2005-01-16 Release date: 2006-03-09 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of Thermus Thermophilus Delta(1)- Pyrroline-5-Carboxylate Dehydrogenase. J.Mol.Biol., 362, 2006
3WZD	KDR in complex with ligand lenvatinib Descriptor: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-{3-chloro-4-[(cyclopropylcarbamoyl)amino]phenoxy}-7-methoxyquinoline-6-carboxamide, ... Authors: Okamoto, K, Ikemori_Kawada, M, Inoue, A, Matsui, J. Deposit date: 2014-09-24 Release date: 2015-05-27 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Distinct binding mode of multikinase inhibitor lenvatinib revealed by biochemical characterization. ACS MED.CHEM.LETT., 6, 2015
2E1U	Crystal structure of Dendranthema morifolium DmAT Descriptor: acyl transferase Authors: Unno, H, Ichimaida, F, Kusunoki, M, Nakayama, T. Deposit date: 2006-10-28 Release date: 2007-04-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and Mutational Studies of Anthocyanin Malonyltransferases Establish the Features of BAHD Enzyme Catalysis J.Biol.Chem., 282, 2007
2E8D	3D Structure of amyloid protofilaments of beta2-microglobulin fragment probed by solid-state NMR Descriptor: Beta-2-microglobulin Authors: Fujiwara, T. Deposit date: 2007-01-19 Release date: 2007-02-13 Last modified: 2024-05-01 Method: SOLID-STATE NMR Cite: 3D structure of amyloid protofilaments of beta2-microglobulin fragment probed by solid-state NMR Proc.Natl.Acad.Sci.Usa, 103, 2006
2ECF	Crystal Structure of Dipeptidyl Aminopeptidase IV from Stenotrophomonas maltophilia Descriptor: Dipeptidyl peptidase IV Authors: Nakajima, Y, Ito, K, Yoshimoto, T. Deposit date: 2007-02-13 Release date: 2008-02-26 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Dipeptidyl aminopeptidase IV from Stenotrophomonas maltophilia exhibits activity against a substrate containing a 4-hydroxyproline residue J.Bacteriol., 190, 2008
2E1V	Crystal structure of Dendranthema morifolium DmAT, seleno-methionine derivative Descriptor: acyl transferase Authors: Unno, H, Ichimaida, F, Kusunoki, M, Nakayama, T. Deposit date: 2006-10-28 Release date: 2007-04-10 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural and Mutational Studies of Anthocyanin Malonyltransferases Establish the Features of BAHD Enzyme Catalysis J.Biol.Chem., 282, 2007

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