PDB: 47011 resultsInfo pagesStatus searchChemie searchBIRD

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3ZH2	Structure of Plasmodium falciparum lactate dehydrogenase in complex with a DNA aptamer Descriptor: DNA APTAMER, L-LACTATE DEHYDROGENASE Authors: Cheung, Y.W, Kwok, J, Law, A.W.L, Watt, R.M, Kotaka, M, Tanner, J.A. Deposit date: 2012-12-20 Release date: 2013-09-25 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural Basis for Discriminatory Recognition of Plasmodium Lactate Dehydrogenase by a DNA Aptamer Proc.Natl.Acad.Sci.USA, 110, 2013
7EDV	DNA duplex containing C-G-Au-C base triple Descriptor: DNA (5'-D(*GP*GP*AP*CP*CP*CP*CP*GP*GP*TP*CP*C)-3'), GOLD ION Authors: Kondo, J, Iwase, E. Deposit date: 2021-03-17 Release date: 2022-03-23 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.01 Å) Cite: DNA duplex containing C-G-Au-C base triple To Be Published
7EDW	DNA duplex containing T-T base pairs in complex with Au(III) Descriptor: DNA (5'-D(*GP*GP*AP*CP*CP*TP*TP*GP*GP*TP*CP*C)-3'), GOLD ION Authors: Kondo, J, Iwase, E. Deposit date: 2021-03-17 Release date: 2022-03-23 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2 Å) Cite: DNA duplex containing T-T base pairs in complex with Au(III) To Be Published
2M44	DNA containing a cluster of 8-oxo-guanine and abasic site lesion: beta anomer (6AP, 8OG14) Descriptor: DNA (5'-D(*CP*GP*CP*TP*CP*(AAB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*(8OG)P*TP*GP*GP*GP*AP*GP*CP*G)-3') Authors: Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. Deposit date: 2013-01-29 Release date: 2014-01-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2M43	DNA containing a cluster of 8-oxo-guanine and abasic site lesion: alpha anomer (AP6, 8OG 14) Descriptor: DNA (5'-D(*CP*GP*CP*TP*CP*(ORP)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*(8OG)P*TP*GP*GP*GP*AP*GP*CP*G)-3') Authors: Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. Deposit date: 2013-01-29 Release date: 2014-01-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2M3Y	DNA containing a cluster of 8-oxo-guanine and abasic site lesion: beta anomer Descriptor: DNA (5'-D(*CP*GP*CP*TP*CP*(AAB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') Authors: Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. Deposit date: 2013-01-28 Release date: 2014-01-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2M3P	DNA containing a cluster of 8-oxo-guanine and abasic site lesion: alpha anomer Descriptor: DNA (5'-D(*CP*GP*CP*TP*CP*(ORP)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') Authors: Zalesak, J, Jourdan, M, Lourdin, M, Constant, J. Deposit date: 2013-01-25 Release date: 2014-01-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2M40	DNA containing a cluster of 8-oxo-guanine and THF lesion Descriptor: DNA (5'-D(*CP*GP*CP*TP*CP*(3DR)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') Authors: Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. Deposit date: 2013-01-28 Release date: 2014-01-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2KEB	NMR solution structure of the N-terminal domain of the DNA polymerase alpha p68 subunit Descriptor: DNA polymerase subunit alpha B Authors: Huang, H, Weiner, B.E, Zhang, H, Fuller, B.E, Gao, Y, Wile, B.M, Chazin, W.J, Fanning, E. Deposit date: 2009-01-28 Release date: 2010-02-02 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of a DNA polymerase alpha-primase domain that docks on the SV40 helicase and activates the viral primosome. J.Biol.Chem., 285, 2010
4F00	Crystal structure of the substrate binding domain of E.coli DnaK in complex with an apidaecin fragment from the bumblebee (residues 3 to 11) Descriptor: Apidaecin, Chaperone protein DnaK Authors: Zahn, M, Straeter, N. Deposit date: 2012-05-03 Release date: 2013-04-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK. J.Mol.Biol., 425, 2013
4JWC	Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(1-16) Descriptor: Cathelicidin-3, Chaperone protein DnaK, SULFATE ION Authors: Zahn, M, Straeter, N. Deposit date: 2013-03-27 Release date: 2013-11-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7. Protein Pept.Lett., 21, 2014
4JWE	Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(1-21) Descriptor: Cathelicidin-3, Chaperone protein DnaK, SULFATE ION Authors: Zahn, M, Straeter, N. Deposit date: 2013-03-27 Release date: 2013-11-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7. Protein Pept.Lett., 21, 2014
4JWD	Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(15-28) Descriptor: Cathelicidin-3, Chaperone protein DnaK, SULFATE ION Authors: Zahn, M, Straeter, N. Deposit date: 2013-03-27 Release date: 2013-11-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7. Protein Pept.Lett., 21, 2014
4JWI	Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(35-43) Descriptor: Cathelicidin-3, Chaperone protein DnaK, SULFATE ION Authors: Zahn, M, Straeter, N. Deposit date: 2013-03-27 Release date: 2013-11-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7. Protein Pept.Lett., 21, 2014
1AC9	SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION REFINEMENT, 6 STRUCTURES Descriptor: DNA Authors: Foti, M, Marshalko, S, Schurter, E, Kumar, S, Beardsley, G.P, Schweitzer, B.I. Deposit date: 1997-02-17 Release date: 1997-07-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a DNA decamer containing the antiviral drug ganciclovir: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. Biochemistry, 36, 1997
4UQM	Crystal structure determination of uracil-DNA N-glycosylase (UNG) from Deinococcus radiodurans in complex with DNA - new insights into the role of the Leucine-loop for damage recognition and repair Descriptor: 5'-D(*CP*CP*TP*AP*TP*CP*CP*AP*AAB*GP*TP*CP*TP*CP*CP*G)-3', 5'-D(*GP*CP*GP*GP*AP*GP*AP*CP*AP*TP*GP*GP*AP*CP*AP*G)-3', CHLORIDE ION, ... Authors: Pedersen, H.L, Johnson, K.A, McVey, C.E, Leiros, I, Moe, E. Deposit date: 2014-06-24 Release date: 2015-08-12 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Structure determination of uracil-DNA N-glycosylase from Deinococcus radiodurans in complex with DNA. Acta Crystallogr. D Biol. Crystallogr., 71, 2015
5J0Y	Binary complex crystal structure of DNA polymerase Beta with T:T mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0P	Binary complex crystal structure of DNA polymerase Beta with A:C mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0S	Binary complex crystal structure of DNA polymerase Beta with C:T mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0U	Binary complex crystal structure of DNA polymerase Beta with G:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0Q	Binary complex crystal structure of DNA polymerase Beta with A:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0T	Binary complex crystal structure of DNA polymerase Beta with G:A mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
1D96	MOLECULAR STRUCTURE OF R(GCG)D(TATACGC): A DNA-RNA HYBRID HELIX JOINED TO DOUBLE HELICAL DNA Descriptor: DNA/RNA (5'-R(*GP*CP*GP*)-D(*TP*AP*TP*AP*CP*GP*C)-3') Authors: Wang, A.H.-J, Fujii, S, Van Boom, J.H, Van Der Marel, G.A, Van Boeckel, S.A.A, Rich, A. Deposit date: 1992-10-17 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular structure of r(GCG)d(TATACGC): a DNA--RNA hybrid helix joined to double helical DNA. Nature, 299, 1982
1D5Y	CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA Descriptor: DNA (5'-D(*AP*CP*TP*TP*TP*GP*AP*CP*AP*TP*TP*CP*AP*GP*TP*GP*CP*TP*GP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*CP*AP*GP*CP*AP*CP*TP*GP*AP*AP*TP*GP*TP*CP*AP*AP*AP*G)-3'), ROB TRANSCRIPTION FACTOR Authors: Kwon, H.J, Bennik, M.H.J, Demple, B, Ellenberger, T. Deposit date: 1999-10-12 Release date: 2000-04-24 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA. Nat.Struct.Biol., 7, 2000
1D41	STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) Descriptor: DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3'), MAGNESIUM ION Authors: Zhou, G, Ho, P.S. Deposit date: 1991-05-07 Release date: 1992-04-15 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Stabilization of Z-DNA by demethylation of thymine bases: 1.3-A single-crystal structure of d(m5CGUAm5CG). Biochemistry, 29, 1990

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