7XLT
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![BU of 7xlt by Molmil](/molmil-images/mine/7xlt) | Cryo-EM Structure of R-loop monoclonal antibody S9.6 in recognizing RNA:DNA hybrids | Descriptor: | DNA, RNA, S9.6 Fab HC, ... | Authors: | Li, Q, Lin, C, Luo, Z, Li, H, Li, X, Sun, Q. | Deposit date: | 2022-04-22 | Release date: | 2022-05-25 | Last modified: | 2022-08-03 | Method: | ELECTRON MICROSCOPY (4.4 Å) | Cite: | Cryo-EM structure of R-loop monoclonal antibody S9.6 in recognizing RNA:DNA hybrids. J Genet Genomics, 49, 2022
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3THZ
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![BU of 3thz by Molmil](/molmil-images/mine/3thz) | Human MutSbeta complexed with an IDL of 6 bases (Loop6) and ADP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, DNA Loop6 minus strand, DNA Loop6 plus strand, ... | Authors: | Yang, W. | Deposit date: | 2011-08-19 | Release date: | 2011-12-21 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (4.3 Å) | Cite: | Mechanism of mismatch repair revealed by human MutS bound to unpaired DNA loops Nat.Struct.Mol.Biol., 19, 2012
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1OWL
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![BU of 1owl by Molmil](/molmil-images/mine/1owl) | Structure of apophotolyase from Anacystis nidulans | Descriptor: | Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION | Authors: | Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. | Deposit date: | 2003-03-28 | Release date: | 2004-04-13 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
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3THX
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![BU of 3thx by Molmil](/molmil-images/mine/3thx) | Human MutSbeta complexed with an IDL of 3 bases (Loop3) and ADP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, DNA Loop3 minus strand, DNA Loop3 plus strand, ... | Authors: | Yang, W. | Deposit date: | 2011-08-19 | Release date: | 2011-12-21 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Mechanism of mismatch recognition revealed by human MutSbeta bound to unpaired DNA loops Nat.Struct.Mol.Biol., 19, 2012
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3THY
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![BU of 3thy by Molmil](/molmil-images/mine/3thy) | Human MutSbeta complexed with an IDL of 2 bases (Loop2) and ADP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, DNA Loop2 minus strand, DNA Loop2 plus strand, ... | Authors: | Yang, W. | Deposit date: | 2011-08-19 | Release date: | 2011-12-21 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.894 Å) | Cite: | Mechanism of mismatch repair revealed by human MutSbeta bound to unpaired DNA loops Nat.Struct.Mol.Biol., 19, 2012
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5I36
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![BU of 5i36 by Molmil](/molmil-images/mine/5i36) | Crystal structure of color device state A | Descriptor: | DNA (26-MER), DNA (5'-D(*AP*CP*AP*GP*TP*CP*GP*TP*GP*GP*TP*AP*TP*C)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*AP*CP*CP*TP*GP*AP*TP*CP*GP*GP*AP*CP*TP*AP*CP*G)-3'), ... | Authors: | Hao, Y, Kristiansen, M, Sha, R, Birktoft, J, Mao, C, Seeman, N.C. | Deposit date: | 2016-02-09 | Release date: | 2017-01-18 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (5.123 Å) | Cite: | A device that operates within a self-assembled 3D DNA crystal. Nat Chem, 9, 2017
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4B9Q
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![BU of 4b9q by Molmil](/molmil-images/mine/4b9q) | |
8D93
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![BU of 8d93 by Molmil](/molmil-images/mine/8d93) | [2T7] Self-assembling tensegrity triangle with R3 symmetry at 2.96 A resolution, update and junction cut for entry 3GBI | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*GP*C)-3'), DNA (5'-D(P*AP*CP*AP*CP*CP*GP*T)-3'), ... | Authors: | Vecchioni, S, Woloszyn, K, Lu, B, Sha, R, Ohayon, Y.P, Seeman, N.C. | Deposit date: | 2022-06-09 | Release date: | 2023-01-25 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.96 Å) | Cite: | The Rule of Thirds: Controlling Junction Chirality and Polarity in 3D DNA Tiles. Small, 19, 2023
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6FRE
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![BU of 6fre by Molmil](/molmil-images/mine/6fre) | Crystal structure of G-1F/H73A mutant of Ssp DnaB Mini-Intein variant M86 | Descriptor: | Replicative DNA helicase,Replicative DNA helicase | Authors: | Popp, M.A, Blankenfeldt, W, Friedel, K, Mootz, H.D. | Deposit date: | 2018-02-15 | Release date: | 2019-01-30 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (1.22 Å) | Cite: | A functional interplay between intein and extein sequences in protein splicing compensates for the essential block B histidine. Chem Sci, 10, 2019
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6UAL
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![BU of 6ual by Molmil](/molmil-images/mine/6ual) | A Self-Assembling DNA Crystal Scaffold with Cavities Containing 3 Helical Turns per Edge | Descriptor: | DNA (32-MER), DNA (5'-D(*TP*GP*GP*AP*AP*AP*CP*AP*GP*AP*CP*TP*GP*TP*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3'), ... | Authors: | Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. | Deposit date: | 2019-09-10 | Release date: | 2020-09-16 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (4.514 Å) | Cite: | Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry To Be Published
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6FRH
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![BU of 6frh by Molmil](/molmil-images/mine/6frh) | Crystal structure of Ssp DnaB Mini-Intein variant M86 | Descriptor: | Replicative DNA helicase,Replicative DNA helicase | Authors: | Popp, M.A, Blankenfeldt, W, Gazdag, M.E, Matern, J.J.C, Mootz, H.D. | Deposit date: | 2018-02-15 | Release date: | 2019-01-30 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.03 Å) | Cite: | A functional interplay between intein and extein sequences in protein splicing compensates for the essential block B histidine. Chem Sci, 10, 2019
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1VTJ
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![BU of 1vtj by Molmil](/molmil-images/mine/1vtj) | MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 1 | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'), NETROPSIN | Authors: | Coll, M, Aymami, J, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J. | Deposit date: | 1999-09-14 | Release date: | 2011-07-13 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Molecular Structure of the Netropsin-d(CGCGATATCGCG) Complex: DNA Conformation in an Alternating AT Segment Biochemistry, 28, 1989
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7B4Z
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![BU of 7b4z by Molmil](/molmil-images/mine/7b4z) | Synthetic DNA duplex dodecamer | Descriptor: | DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*TP*G)-3') | Authors: | Lomzov, A.A, Shernuykov, A.V, Sviridov, E.A, Shevelev, G.Y, Bagryanskaya, E.G, Pyshnyi, D.V. | Deposit date: | 2020-12-03 | Release date: | 2020-12-16 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Study of a DNA Duplex by Nuclear Magnetic Resonance and Molecular Dynamics Simulations. Validation of Pulsed Dipolar Electron Paramagnetic Resonance Distance Measurements Using Triarylmethyl-Based Spin Labels. J Phys Chem B, 120, 2016
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7ARE
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![BU of 7are by Molmil](/molmil-images/mine/7are) | DNA origami pointer object v2 | Descriptor: | SCAFFOLD STRAND, STAPLE STRAND | Authors: | Thomas, M, Feigl, E, Kohler, F, Kube, M, Nagel-Yuksel, B, Willner, E.M, Funke, J.J, Gerling, T, Stommer, P, Honemann, M.N, Martin, T.G, Scheres, S.H.W, Dietz, H. | Deposit date: | 2020-10-24 | Release date: | 2020-11-18 | Last modified: | 2024-05-01 | Method: | ELECTRON MICROSCOPY (7.4 Å) | Cite: | Revealing the structures of megadalton-scale DNA complexes with nucleotide resolution. Nat Commun, 11, 2020
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1S9B
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![BU of 1s9b by Molmil](/molmil-images/mine/1s9b) | Crystal Structure Analysis of the B-DNA GAATTCG | Descriptor: | 5'-D(*GP*AP*AP*TP*TP*CP*G)-3', NICKEL (II) ION | Authors: | Valls, N, Uson, I, Gouyette, C, Subirana, J.A. | Deposit date: | 2004-02-04 | Release date: | 2004-09-07 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.81 Å) | Cite: | A cubic arrangement of DNA double helices based on nickel-guanine interactions J.Am.Chem.Soc., 126, 2004
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7X4E
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![BU of 7x4e by Molmil](/molmil-images/mine/7x4e) | Structure of 10635-DndE | Descriptor: | DNA sulfur modification protein DndE, GLYCEROL | Authors: | Haiyan, G, Wei, H, Chen, S, Wang, L, Wu, G. | Deposit date: | 2022-03-02 | Release date: | 2022-04-20 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.32 Å) | Cite: | Structural and Functional Analysis of DndE Involved in DNA Phosphorothioation in the Haloalkaliphilic Archaea Natronorubrum bangense JCM10635. Mbio, 13, 2022
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1VTC
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![BU of 1vtc by Molmil](/molmil-images/mine/1vtc) | |
6A7Y
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![BU of 6a7y by Molmil](/molmil-images/mine/6a7y) | Solution structure of an intermolecular leaped V-shape G-quadruplex | Descriptor: | DNA (5'-D(*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'), DNA (5'-D(*TP*GP*GP*GP*GP*A)-3') | Authors: | Wan, C.J, Zhang, N. | Deposit date: | 2018-07-05 | Release date: | 2018-12-12 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | NMR solution structure of an asymmetric intermolecular leaped V-shape G-quadruplex: selective recognition of the d(G2NG3NG4) sequence motif by a short linear G-rich DNA probe. Nucleic Acids Res., 47, 2019
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3HCL
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![BU of 3hcl by Molmil](/molmil-images/mine/3hcl) | Helical superstructures in a DNA oligonucleotide crystal | Descriptor: | DNA (5'-D(*CP*GP*AP*TP*AP*T)-3') | Authors: | De Luchi, D, Martinez de Ilarduya, I, Subirana, J.A, Uson, I, Campos, J.L. | Deposit date: | 2009-05-06 | Release date: | 2010-05-19 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.59 Å) | Cite: | A geometric approach to the crystallographic solution of nonconventional DNA structures: helical superstructures of d(CGATAT) Angew.Chem.Int.Ed.Engl., 49, 2010
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7N5K
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![BU of 7n5k by Molmil](/molmil-images/mine/7n5k) | PCNA from Thermococcus gammatolerans: crystal II, collection 1, 1.98 A, 3.84 MGy | Descriptor: | DNA polymerase sliding clamp, GLYCEROL, SULFATE ION | Authors: | Marin-Tovar, Y, Rudino-Pinera, E. | Deposit date: | 2021-06-05 | Release date: | 2022-05-04 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.98 Å) | Cite: | PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
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7N5M
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![BU of 7n5m by Molmil](/molmil-images/mine/7n5m) | PCNA from Thermococcus gammatolerans: crystal III, collection 1, 2.00 A, 1.91 MGy | Descriptor: | DNA polymerase sliding clamp, GLYCEROL, SULFATE ION | Authors: | Marin-Tovar, Y, Rudino-Pinera, E. | Deposit date: | 2021-06-05 | Release date: | 2022-05-04 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
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7N5J
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![BU of 7n5j by Molmil](/molmil-images/mine/7n5j) | PCNA from Thermococcus gammatolerans: crystal I, collection 5, 2.82 A, 89.1 MGy | Descriptor: | DNA polymerase sliding clamp, GLYCEROL, SULFATE ION | Authors: | Marin-Tovar, Y, Rudino-Pinera, E. | Deposit date: | 2021-06-05 | Release date: | 2022-05-04 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2.82 Å) | Cite: | PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
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7N5I
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![BU of 7n5i by Molmil](/molmil-images/mine/7n5i) | PCNA from Thermococcus gammatolerans: crystal I, collection 1, 1.95 A, 5.22 MGy | Descriptor: | DNA polymerase sliding clamp, GLYCEROL, SULFATE ION | Authors: | Marin-Tovar, Y, Rudino-Pinera, E. | Deposit date: | 2021-06-05 | Release date: | 2022-05-04 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
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7N5L
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![BU of 7n5l by Molmil](/molmil-images/mine/7n5l) | PCNA from Thermococcus gammatolerans: crystal II, collection 20, 3.07 A, 77.0 MGy | Descriptor: | DNA polymerase sliding clamp, GLYCEROL, SULFATE ION | Authors: | Marin-Tovar, Y, Rudino-Pinera, E. | Deposit date: | 2021-06-05 | Release date: | 2022-05-04 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (3.07 Å) | Cite: | PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
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7N5N
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![BU of 7n5n by Molmil](/molmil-images/mine/7n5n) | PCNA from Thermococcus gammatolerans: crystal III, collection 15, 2.20 A, 28.7 MGy | Descriptor: | DNA polymerase sliding clamp, GLYCEROL, SULFATE ION | Authors: | Marin-Tovar, Y, Rudino-Pinera, E. | Deposit date: | 2021-06-05 | Release date: | 2022-05-04 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
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