Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2OGR
DownloadVisualize
BU of 2ogr by Molmil
Crystal Structure of Yellow Fluorescent Protein from Zoanthus sp. at 1.8 A Resolution
Descriptor: FLUORESCENT PROTEIN FP538
Authors:Pletneva, N.V, Pletnev, S.V, Tikhonova, T.V, Pletnev, V.Z.
Deposit date:2007-01-08
Release date:2007-09-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom
Bioorg.Khim., 33
3CM0
DownloadVisualize
BU of 3cm0 by Molmil
Crystal structure of adenylate kinase from Thermus thermophilus HB8
Descriptor: Adenylate kinase
Authors:Nakagawa, N, Kondo, N, Masui, R, Matsuda, Z, Iwamoto, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-03-20
Release date:2008-09-23
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of adenylate kinase from Thermus thermophilus HB8.
To be Published
1C7S
DownloadVisualize
BU of 1c7s by Molmil
BETA-N-ACETYLHEXOSAMINIDASE MUTANT D539A COMPLEXED WITH DI-N-ACETYL-BETA-D-GLUCOSAMINE (CHITOBIASE)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-N-ACETYLHEXOSAMINIDASE, SULFATE ION
Authors:Prag, G, Papanikolau, Y, Tavlas, G, Vorgias, C.E, Petratos, K, Oppenheim, A.B.
Deposit date:2000-03-14
Release date:2000-09-20
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of chitobiase mutants complexed with the substrate Di-N-acetyl-d-glucosamine: the catalytic role of the conserved acidic pair, aspartate 539 and glutamate 540.
J.Mol.Biol., 300, 2000
6QSO
DownloadVisualize
BU of 6qso by Molmil
mTFP* closed conformation: I197E-Y200H-Y204H mutant for enhanced metal binding
Descriptor: GFP-like fluorescent chromoprotein cFP484
Authors:Fischer, J, Renn, D, Arold, T.A, Groll, M.
Deposit date:2019-02-21
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Robust and Versatile Host Protein for the Design and Evaluation of Artificial Metal Centers
Acs Catalysis, 2019
2IB5
DownloadVisualize
BU of 2ib5 by Molmil
Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus
Descriptor: Chromo protein, PHOSPHATE ION
Authors:Chan, M.C.Y, Bosanac, I, Ikura, M.
Deposit date:2006-09-10
Release date:2006-10-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Characterization of a Blue Chromoprotein and Its Yellow Mutant from the Sea Anemone Cnidopus Japonicus
J.Biol.Chem., 281, 2006
1JBY
DownloadVisualize
BU of 1jby by Molmil
CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT LOW PH
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Hanson, G.T, McAnaney, T.B, Park, E.S, Rendell, M.E.P, Yarbrough, D.K, Chu, S, Xi, L, Boxer, S.G, Montrose, M.H, Remington, S.J.
Deposit date:2001-06-07
Release date:2003-01-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Green Fluorescent Protein Variants as Ratiometric Dual Emission pH Sensors. 1. Structural Characterization and Preliminary Application.
Biochemistry, 41, 2002
3P28
DownloadVisualize
BU of 3p28 by Molmil
Structure of a Circular Permutant of Green Fluorescent Protein
Descriptor: Green fluorescent protein
Authors:Melief, E.H, Kim, H, Kim, T.S, Wachter, R.M, Tonge, P.J.
Deposit date:2010-10-01
Release date:2011-10-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Construction and Characterization of a Stable Circular Permutant of Green Fluorescent Protein
To be Published
8H0L
DownloadVisualize
BU of 8h0l by Molmil
Sulfur binding domain of Hga complexed with phosphorothioated DNA
Descriptor: DNA (5'-D(*CP*GP*AP*GP*(PST)P*TP*CP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*GP*AP*AP*CP*TP*CP*G)-3'), MAGNESIUM ION, ...
Authors:Liu, G, He, X, Hu, W, Yang, B, Xiao, Q.
Deposit date:2022-09-29
Release date:2023-09-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Characterization of a promiscuous DNA sulfur binding domain and application in site-directed RNA base editing.
Nucleic Acids Res., 51, 2023
8XH2
DownloadVisualize
BU of 8xh2 by Molmil
Orthorhombic crystal structure of green fluorescent protein nowGFP at pH 6.0
Descriptor: GLYCEROL, nowGFP
Authors:Kim, C.U, Kim, J.K.
Deposit date:2023-12-16
Release date:2024-09-11
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Comparison of two crystal polymorphs of NowGFP reveals a new conformational state trapped by crystal packing.
Acta Crystallogr D Struct Biol, 80, 2024
2O29
DownloadVisualize
BU of 2o29 by Molmil
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-BR Complex
Descriptor: BROMIDE ION, Green fluorescent protein
Authors:Garau, G.
Deposit date:2006-11-29
Release date:2007-05-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spectroscopic and Structural Study of Proton and Halide Ion Cooperative Binding to GFP.
Biophys.J., 93, 2007
2ORI
DownloadVisualize
BU of 2ori by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (A193V/Q199R/)
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Counago, R, Shamoo, Y, Wilson, C.J, Wu, G, Myers, J.
Deposit date:2007-02-02
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (A193V/Q199R/)
To be Published
2P4M
DownloadVisualize
BU of 2p4m by Molmil
High pH structure of Rtms5 H146S variant
Descriptor: GFP-like non-fluorescent chromoprotein, IODIDE ION
Authors:Battad, J.M, Wilmann, P.G, Olsen, S, Byres, E, Smith, S.C, Dove, S.G, Turcic, K.N, Devenish, R.J, Rossjohn, J, Prescott, M.
Deposit date:2007-03-12
Release date:2007-04-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A structural basis for the pH-dependent increase in fluorescence efficiency of chromoproteins
J.Mol.Biol., 368, 2007
2G5Z
DownloadVisualize
BU of 2g5z by Molmil
Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis and decarboxylation
Descriptor: Green fluorescent protein, MAGNESIUM ION
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2006-02-23
Release date:2006-04-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Understanding GFP Posttranslational Chemistry: Structures of Designed Variants that Achieve Backbone Fragmentation, Hydrolysis, and Decarboxylation.
J.Am.Chem.Soc., 128, 2006
7SF9
DownloadVisualize
BU of 7sf9 by Molmil
Branchiostoma Floridae Violet Fluorescent Protein
Descriptor: Violet Fluorescent Protein
Authors:Pletnev, S, Pletneva, N, Pletnev, V.Z, Muslinkina, L.
Deposit date:2021-10-03
Release date:2022-03-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A novel violet fluorescent protein contains a unique oxidized tyrosine as the simplest chromophore ever reported in fluorescent proteins.
Protein Sci., 31, 2022
2XB4
DownloadVisualize
BU of 2xb4 by Molmil
Crystal structures of zinc containing Adenylate kinase from Desulfovibrio gigas
Descriptor: ADENYLATE KINASE, S,R MESO-TARTARIC ACID, ZINC ION
Authors:Mukhopadhyay, A, Kladova, A.V, Gavel, O.Y, Calvete, J.J, Shnyrov, V.L, Moura, I, Moura, J.J.G, Bursakov, S.A, Romao, M.J, Trincao, J.
Deposit date:2010-04-05
Release date:2010-09-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Zinc-, Cobalt-, and Iron-Containing Adenylate Kinase from Desulfovibrio Gigas: A Novel Metal-Containing Adenylate Kinase from Gram-Negative Bacteria.
J.Biol.Inorg.Chem., 16, 2011
5GJO
DownloadVisualize
BU of 5gjo by Molmil
Crystal structure of SrLDC mutant (A225C/T302C) in complex with PLP
Descriptor: GLYCEROL, Lysine/ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Sagong, H.-Y, Kim, K.-J.
Deposit date:2016-07-01
Release date:2017-05-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Lysine Decarboxylase with an Enhanced Affinity for Pyridoxal 5-Phosphate by Disulfide Bond-Mediated Spatial Reconstitution
PLoS ONE, 12, 2017
2OO7
DownloadVisualize
BU of 2oo7 by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (T179I/Q199R)
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Counago, R, Wilson, C.J, Wu, G, Myers, J.C, Wittung-Stafshede, P, Shamoo, Y.
Deposit date:2007-01-25
Release date:2008-02-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (T179I/Q199R)
To be Published
2OSB
DownloadVisualize
BU of 2osb by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q16L/Q199R/)
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Myers, J, Counago, R, Wilson, C.J, Wu, G, Shamoo, Y.
Deposit date:2007-02-05
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q16L/Q199R/)
To be Published
2GX2
DownloadVisualize
BU of 2gx2 by Molmil
Crystal structural and functional analysis of GFP-like fluorescent protein Dronpa
Descriptor: MAGNESIUM ION, fluorescent protein Dronpa
Authors:Hwang, K.Y, Nam, K.-H, Park, S.-Y, Sugiyama, K.
Deposit date:2006-05-08
Release date:2007-05-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S
Biochem.Biophys.Res.Commun., 354, 2007
2P3S
DownloadVisualize
BU of 2p3s by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (G214R/Q199R)
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Counago, R, Wilson, C.J, Myers, J, Wu, G, Shamoo, Y.
Deposit date:2007-03-09
Release date:2008-01-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (G214R/Q199R)
To be Published
4KW9
DownloadVisualize
BU of 4kw9 by Molmil
Crystal Structure of Green Fluorescent Protein
Descriptor: CHLORIDE ION, Green fluorescent protein, ZINC ION
Authors:Barnard, T.J, Yu, X, Noinaj, N, Taraska, J.W.
Deposit date:2013-05-23
Release date:2014-04-09
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Green Fluorescent Protein
To be Published
3FZA
DownloadVisualize
BU of 3fza by Molmil
Crystal structure of poplar glutaredoxin S12 in complex with glutathione and beta-mercaptoethanol
Descriptor: BETA-MERCAPTOETHANOL, GLUTATHIONE, Glutaredoxin
Authors:Didierjean, C, Corbier, C, Koh, C.S, Rouhier, N, Jacquot, J.P.
Deposit date:2009-01-24
Release date:2009-02-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-function relationship of the chloroplastic glutaredoxin S12 with an atypical WCSYS active site.
J.Biol.Chem., 284, 2009
5V6K
DownloadVisualize
BU of 5v6k by Molmil
Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae Bound to N-acetylglucosaminyl-beta-1,2-mannose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, GLYCEROL, Hemolysin-related protein
Authors:De, S, Kaus, K, Sinclair, S, Case, B.C, Olson, R.
Deposit date:2017-03-16
Release date:2018-01-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins.
PLoS Pathog., 14, 2018
3GJ1
DownloadVisualize
BU of 3gj1 by Molmil
Non photoactivated state of PA-GFP
Descriptor: CHLORIDE ION, Green fluorescent protein, SULFATE ION
Authors:Henderson, J.N, Gepshtein, R, Heenan, J.R, Kallio, K, Huppert, D, Remington, S.J.
Deposit date:2009-03-07
Release date:2009-03-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and mechanism of the photoactivatable green fluorescent protein.
J.Am.Chem.Soc., 131, 2009
1HCJ
DownloadVisualize
BU of 1hcj by Molmil
Photoproduct of the wild-type Aequorea victoria Green Fluorescent Protein
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Van Thor, J.J, Gensch, T, Hellingwerf, K.J, Johnson, L.
Deposit date:2001-05-04
Release date:2001-12-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Phototransformation of Green Fluorescent Protein with Uv and Visible Light Leads to Decarboxylation of Glutamate 222
Nat.Struct.Biol., 9, 2002

225946

數據於2024-10-09公開中

PDB statisticsPDBj update infoContact PDBjnumon