PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

---

3GTQ	Backtracked RNA polymerase II complex induced by damage Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*CP*AP*TP*AP*AP*CP*CP*AP*CP*AP*GP*GP*CP*TP*CP*CP*TP*CP*TP*CP*CP*AP*TP*C)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Wang, D, Bushnell, D.A, Huang, X, Westover, K.D, Levitt, M, Kornberg, R.D. Deposit date: 2009-03-27 Release date: 2009-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science, 324, 2009
3GTG	Backtracked RNA polymerase II complex with 12mer RNA Descriptor: DNA (28-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Wang, D, Bushnell, D.A, Huang, X, Westover, K.D, Levitt, M, Kornberg, R.D. Deposit date: 2009-03-27 Release date: 2009-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.78 Å) Cite: Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science, 324, 2009
7Y7S	QDE-1 in complex with DNA template, RNA primer and AMPNPP Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Cui, R.X, Gan, J.H, Ma, J.B. Deposit date: 2022-06-22 Release date: 2022-09-28 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural insights into the dual activities of the two-barrel RNA polymerase QDE-1. Nucleic Acids Res., 50, 2022
3GTJ	Backtracked RNA polymerase II complex with 13mer RNA Descriptor: DNA (28-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Wang, D, Bushnell, D.A, Huang, X, Westover, K.D, Levitt, M, Kornberg, R.D. Deposit date: 2009-03-27 Release date: 2009-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.42 Å) Cite: Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science, 324, 2009
3O3G	T. maritima RNase H2 in complex with nucleic acid substrate and calcium ions Descriptor: CALCIUM ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), DNA/RNA (5'-D(*GP*AP*CP*AP*C)-R(P*C)-D(P*TP*GP*AP*TP*TP*C)-3'), ... Authors: Rychlik, M.P, Chon, H, Cerritelli, S.M, Klimek, P, Crouch, R.J, Nowotny, M. Deposit date: 2010-07-24 Release date: 2010-12-08 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage. Mol.Cell, 40, 2010
6I2N	Helical RNA-bound Hantaan virus nucleocapsid Descriptor: Nucleoprotein, RNA (5'-R(P*UP*UP*U)-3') Authors: Arragain, B, Reguera, J, Desfosses, A, Gutsche, I, Schoehn, G, Malet, H. Deposit date: 2018-11-01 Release date: 2019-01-23 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: High resolution cryo-EM structure of the helical RNA-bound Hantaan virus nucleocapsid reveals its assembly mechanisms. Elife, 8, 2019
3R9X	Crystal structure of Era in complex with MgGDPNP, nucleotides 1506-1542 of 16S ribosomal RNA, and KsgA Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETATE ION, GTPase Era, ... Authors: Tu, C, Ji, X. Deposit date: 2011-03-26 Release date: 2011-06-22 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA. Proc.Natl.Acad.Sci.USA, 108, 2011
3GTL	Backtracked RNA polymerase II complex with 13mer with G<>U mismatch Descriptor: DNA (28-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Wang, D, Bushnell, D.A, Huang, X, Westover, K.D, Levitt, M, Kornberg, R.D. Deposit date: 2009-03-27 Release date: 2009-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.38 Å) Cite: Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science, 324, 2009
3O3F	T. maritima RNase H2 D107N in complex with nucleic acid substrate and magnesium ions Descriptor: DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), DNA/RNA (5'-D(*GP*AP*CP*AP*C)-R(P*C)-D(P*TP*GP*AP*TP*TP*C)-3'), MAGNESIUM ION, ... Authors: Rychlik, M.P, Chon, H, Cerritelli, S.M, Klimek, P, Crouch, R.J, Nowotny, M. Deposit date: 2010-07-24 Release date: 2010-12-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage. Mol.Cell, 40, 2010
4PEH	Dbr1 in complex with synthetic linear RNA Descriptor: GLYCEROL, MANGANESE (II) ION, RNA (5'-R(*CP*UP*AP*(A2P)P*AP*CP*AP*A)-3'), ... Authors: Montemayor, E.J, Katolik, A, Clark, N.E, Taylor, A.B, Schuermann, J.P, Combs, D.J, Johnsson, R, Holloway, S.P, Stevens, S.W, Damha, M.J, Hart, P.J. Deposit date: 2014-04-23 Release date: 2014-08-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1. Nucleic Acids Res., 42, 2014
7U0Y	Crystal structure of Pepper RNA aptamer in complex with HBC599 ligand and Fab BL3-6 Descriptor: 4-[(Z)-1-cyano-2-{6-[(2-hydroxyethyl)(methyl)amino]-1-benzothiophen-2-yl}ethenyl]benzonitrile, Fab BL3-6 heavy chain, Fab BL3-6 light chain, ... Authors: Rees, H.C, Piccirilli, J.A. Deposit date: 2022-02-19 Release date: 2022-08-31 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Structural Basis for Fluorescence Activation by Pepper RNA. Acs Chem.Biol., 17, 2022
7QSH	23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648 Descriptor: 23S ribosomal RNA Sarcin Ricin Loop 27-nucleotide fragment, 9-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-2-oxidanyl-1~{H}-purin-6-one, GLYCEROL, ... Authors: Ennifar, E, Micura, R. Deposit date: 2022-01-13 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (0.86 Å) Cite: Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA. Nucleic Acids Res., 50, 2022
7QUA	Duplex RNA containing Xanthosine-Cytosine base pairs Descriptor: MAGNESIUM ION, RNA (5'-R(*CP*GP*CP*GP*(XAN)P*AP*UP*UP*AP*GP*CP*G)-3'), SODIUM ION Authors: Ennifar, E, Micura, R. Deposit date: 2022-01-17 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1 Å) Cite: Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA. Nucleic Acids Res., 50, 2022
5E02	Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock Descriptor: ADENOSINE-5'-DIPHOSPHATE, FRQ-interacting RNA helicase, RNA (5'-R(*AP*AP*AP*A)-3') Authors: Conrad, K.S, Crane, B.C. Deposit date: 2015-09-28 Release date: 2016-07-06 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock. Embo J., 35, 2016
7UU4	Crystal structure of APOBEC3G complex with ssRNA Descriptor: DNA dC->dU-editing enzyme APOBEC-3G, RNA (5'-R(P*UP*AP*AP*UP*UP*U)-3'), SULFATE ION, ... Authors: Yang, H, Li, S, Chen, X.S. Deposit date: 2022-04-28 Release date: 2023-01-11 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis of sequence-specific RNA recognition by the antiviral factor APOBEC3G. Nat Commun, 13, 2022
4PEI	Dbr1 in complex with synthetic branched RNA analog Descriptor: GLYCEROL, NICKEL (II) ION, RNA (5'-R(*(G46)P*U)-3'), ... Authors: Montemayor, E.J, Katolik, A, Clark, N.E, Taylor, A.B, Schuermann, J.P, Combs, D.J, Johnsson, R, Holloway, S.P, Stevens, S.W, Damha, M.J, Hart, P.J. Deposit date: 2014-04-23 Release date: 2014-08-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1. Nucleic Acids Res., 42, 2014
6IV8	the selenomethionine(SeMet)-derived Cas13d binary complex Descriptor: MAGNESIUM ION, RNA (51-MER), RNA (53-MER), ... Authors: Zhang, B, Ye, Y.M, Ye, W.W, OuYang, S.Y. Deposit date: 2018-12-02 Release date: 2019-06-19 Last modified: 2019-06-26 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Two HEPN domains dictate CRISPR RNA maturation and target cleavage in Cas13d. Nat Commun, 10, 2019
7MKI	Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR (-5G to C) promoter DNA Descriptor: CHAPSO, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Saecker, R.M, Darst, S.A, Chen, J. Deposit date: 2021-04-23 Release date: 2021-09-29 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural origins of Escherichia coli RNA polymerase open promoter complex stability. Proc.Natl.Acad.Sci.USA, 118, 2021
1RC5	CRYSTAL STRUCTURE OF MG(II)-COMPLEX OF RNASE III ENDONUCLEASE DOMAIN FROM AQUIFEX AEOLICUS AT 2.30 ANGSTROM RESOLUTION Descriptor: MAGNESIUM ION, Ribonuclease III Authors: Blaszczyk, J, Gan, J, Ji, X. Deposit date: 2003-11-03 Release date: 2004-03-30 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA. Structure, 12, 2004
6BFB	Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3 Descriptor: 5-[(3S,4S)-3-(dimethylamino)-4-hydroxypyrrolidin-1-yl]-6-fluoro-4-methyl-8-oxo-3,4-dihydro-8H-1-thia-4,9b-diazacyclopenta[cd]phenalene-9-carboxylic acid, MAGNESIUM ION, RNA (54-MER), ... Authors: Rizvi, N.F, Fischmann, T.O. Deposit date: 2017-10-26 Release date: 2018-02-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Discovery of Selective RNA-Binding Small Molecules by Affinity-Selection Mass Spectrometry. ACS Chem. Biol., 13, 2018
6IV9	the Cas13d binary complex Descriptor: Cas13d, MAGNESIUM ION, crRNA (50-MER) Authors: Zhang, B, Ye, Y.M, Ye, W.W, OuYang, S.Y. Deposit date: 2018-12-02 Release date: 2019-06-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Two HEPN domains dictate CRISPR RNA maturation and target cleavage in Cas13d. Nat Commun, 10, 2019
1HVU	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE COMPLEXED WITH A 33-BASE NUCLEOTIDE RNA PSEUDOKNOT Descriptor: PROTEIN (HIV-1 REVERSE TRANSCRIPTASE), RNA (33 NUCLEOTIDE RNA PSEUDOKNOT) Authors: Jaeger, J, Restle, T, Steitz, T.A. Deposit date: 1998-06-30 Release date: 1999-01-13 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (4.75 Å) Cite: The structure of HIV-1 reverse transcriptase complexed with an RNA pseudoknot inhibitor. EMBO J., 17, 1998
4E7A	Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin deletion bound to primer-template RNA with a 2',3'-ddC Descriptor: 5'-R(*CP*AP*UP*GP*GP*C)-D(P*(DOC))-3', RNA-directed RNA polymerase Authors: Edwards, T.E, Mosley, R.T. Deposit date: 2012-03-16 Release date: 2012-04-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of hepatitis C virus polymerase in complex with primer-template RNA. J.Virol., 86, 2012
1T4L	Solution structure of double-stranded RNA binding domain of S. cerevisiae RNase III (Rnt1p) in complex with the 5' terminal RNA hairpin of snR47 precursor Descriptor: 5' terminal hairpin of snR47 precursor, Ribonuclease III Authors: Wu, H, Henras, A, Chanfreau, G, Feigon, J. Deposit date: 2004-04-29 Release date: 2004-06-01 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III. Proc.Natl.Acad.Sci.USA, 101, 2004
2D7S	Foot and Mouth Disease Virus RNA-dependent RNA polymerase in complex with VPg protein Descriptor: RNA-dependent RNA polymerase, VPg1 protein Authors: Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N. Deposit date: 2005-11-29 Release date: 2006-03-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3 Å) Cite: The structure of a protein primer-polymerase complex in the initiation of genome replication Embo J., 25, 2006

<184185186187188189190191192193194195196197198199>