PDB: 223532 resultsInfo pagesStatus searchChemie searchBIRD

---

6XP4	Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 Descriptor: Nucleoside diphosphate kinase Authors: Nguyen, S, Bruning, J.B. Deposit date: 2020-07-07 Release date: 2020-11-04 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Nucleoside selectivity of Aspergillus fumigatus nucleoside-diphosphate kinase. Febs J., 288, 2021
6XPS	Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to GDP Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase Authors: Nguyen, S, Bruning, J.B. Deposit date: 2020-07-08 Release date: 2020-11-04 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.644 Å) Cite: Nucleoside selectivity of Aspergillus fumigatus nucleoside-diphosphate kinase. Febs J., 288, 2021
6XPU	Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to IDP Descriptor: INOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase Authors: Nguyen, S, Bruning, J.B. Deposit date: 2020-07-09 Release date: 2020-11-04 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Nucleoside selectivity of Aspergillus fumigatus nucleoside-diphosphate kinase. Febs J., 288, 2021
6LCE	Crystal Structure of beta-L-arabinobiose binding protein - selenomethionine derivative Descriptor: ABC transporter substrate binding component, beta-L-arabinofuranose-(1-2)-alpha-L-arabinofuranose Authors: Miyake, M, Arakawa, T, Fushinobu, S. Deposit date: 2019-11-18 Release date: 2020-04-22 Last modified: 2020-12-23 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structural analysis of beta-L-arabinobiose-binding protein in the metabolic pathway of hydroxyproline-rich glycoproteins in Bifidobacterium longum. Febs J., 287, 2020
6XPV	Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to dTDP Descriptor: Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE Authors: Nguyen, S, Bruning, J.B. Deposit date: 2020-07-09 Release date: 2020-11-04 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Nucleoside selectivity of Aspergillus fumigatus nucleoside-diphosphate kinase. Febs J., 288, 2021
6XP7	Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase Authors: Nguyen, S, Bruning, J.B. Deposit date: 2020-07-08 Release date: 2020-11-04 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Nucleoside selectivity of Aspergillus fumigatus nucleoside-diphosphate kinase. Febs J., 288, 2021
7R97	Crystal structure of postcleavge complex of Escherichia coli RNase III Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... Authors: Dharavath, S, Shaw, G.X, Ji, X. Deposit date: 2021-06-28 Release date: 2022-07-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.804 Å) Cite: Structural basis for Dicer-like function of an engineered RNase III variant and insights into the reaction trajectory of two-Mg 2+ -ion catalysis. Rna Biol., 19, 2022
6XPW	Nucleoside Diphosphate Kinase from Aspergillus fumgiatus Af293 bound to CDP Descriptor: CYTIDINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase, PHOSPHATE ION Authors: Nguyen, S, Bruning, J.B. Deposit date: 2020-07-09 Release date: 2020-11-04 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Nucleoside selectivity of Aspergillus fumigatus nucleoside-diphosphate kinase. Febs J., 288, 2021
5E4T	Acetylcholinesterase Methylene Blue with PEG Descriptor: 1,2-ETHANEDIOL, 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM, Acetylcholinesterase, ... Authors: Dym, O. Deposit date: 2015-10-07 Release date: 2016-03-30 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.43 Å) Cite: The impact of crystallization conditions on structure-based drug design: A case study on the methylene blue/acetylcholinesterase complex. Protein Sci., 25, 2016
5L9D	AFAMIN ANTIBODY FRAGMENT, N14 FAB, L1- GLYCOSYLATED, CRYSTAL FORM I, parsimonious model Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, DI(HYDROXYETHYL)ETHER, ... Authors: Rupp, B, Naschberger, A. Deposit date: 2016-06-10 Release date: 2016-08-03 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.88 Å) Cite: The N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling. Acta Crystallogr D Struct Biol, 72, 2016
5L7X	Afamin antibody fragment, N14 Fab, L1- glycosylated, crystal form II Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Mouse Antibody Fab Fragment, ... Authors: Rupp, B, Naschberger, A. Deposit date: 2016-06-04 Release date: 2016-07-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.86 Å) Cite: The N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling. Acta Crystallogr D Struct Biol, 72, 2016
5LGH	Afamin antibody fragment, N14 Fab, L1- glycosilated, crystal form II, same as 5L7X, but isomorphous setting indexed same as 5L88, 5L9D Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, MOUSE ANTIBODY FAB FRAGMENT, ... Authors: Rupp, B, Naschberger, A. Deposit date: 2016-07-07 Release date: 2016-08-03 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.86 Å) Cite: The N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling. Acta Crystallogr D Struct Biol, 72, 2016
5JPM	Structure of the complex of human complement C4 with MASP-2 rebuilt using iMDFF Descriptor: Complement C4-A, Mannan-binding lectin serine protease 2, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Croll, T.I, Andersen, G.R. Deposit date: 2016-05-03 Release date: 2016-08-10 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (3.75 Å) Cite: Re-evaluation of low-resolution crystal structures via interactive molecular-dynamics flexible fitting (iMDFF): a case study in complement C4. Acta Crystallogr D Struct Biol, 72, 2016
7Z6Z	Crystal structure of Angiotensin-1 converting enzyme N-domain in complex with fosinoprilat Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Cozier, G.E, Acharya, K.R. Deposit date: 2022-03-14 Release date: 2022-06-22 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural basis for the inhibition of human angiotensin-1 converting enzyme by fosinoprilat. Febs J., 289, 2022
6YD9	Ecoli GyrB24 with inhibitor 16a Descriptor: 1,2-ETHANEDIOL, DNA gyrase subunit B, N-[6-(3-azanylpropanoylamino)-1,3-benzothiazol-2-yl]-3,4-bis(chloranyl)-5-methyl-1H-pyrrole-2-carboxamide Authors: Barancokova, M, Skok, Z, Benek, O, Cruz, C.D, Tammela, P, Tomasic, T, Zidar, N, Masic, L.P, Zega, A, Stevenson, C.E.M, Mundy, J, Lawson, D.M, Maxwell, A.M, Kikelj, D, Ilas, J. Deposit date: 2020-03-20 Release date: 2020-12-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Exploring the Chemical Space of Benzothiazole-Based DNA Gyrase B Inhibitors. Acs Med.Chem.Lett., 11, 2020
7EZC	Adenosine A2a receptor mutant-I92N Descriptor: 6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide, Adenosine receptor A2a,Soluble cytochrome b562 Authors: Cui, M, Zhou, Q, Yao, D, Zhao, S, Song, G. Deposit date: 2021-06-01 Release date: 2022-04-13 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Crystal structure of a constitutive active mutant of adenosine A 2A receptor. Iucrj, 9, 2022
5K9H	Crystal structure of a glycoside hydrolase 29 family member from an unknown rumen bacterium Descriptor: 0940_GH29, GLYCEROL, SODIUM ION, ... Authors: Summers, E.L, Arcus, V.L. Deposit date: 2016-05-31 Release date: 2016-09-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.029 Å) Cite: The structure of a glycoside hydrolase 29 family member from a rumen bacterium reveals unique, dual carbohydrate-binding domains. Acta Crystallogr.,Sect.F, 72, 2016
6Y86	Active YidC insertase crystal structure with the first transmembrane domain resolved Descriptor: Membrane protein insertase YidC Authors: Li, X.D, Nass, K. Deposit date: 2020-03-03 Release date: 2021-09-22 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The role of the N-terminal amphipathic helix in bacterial YidC: Insights from functional studies, the crystal structure and molecular dynamics simulations. Biochim Biophys Acta Biomembr, 1864, 2022
5DLP	Acetylcholinesterase Methylene Blue no PEG Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM, Acetylcholinesterase, ... Authors: Dym, O. Deposit date: 2015-09-07 Release date: 2016-03-30 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The impact of crystallization conditions on structure-based drug design: A case study on the methylene blue/acetylcholinesterase complex. Protein Sci., 25, 2016
4OA5	X-ray crystal structure of an O-methyltransferase from Anaplasma phagocytophilum bound to SAH solved by iodide SAD phasing Descriptor: 1,2-ETHANEDIOL, GLYCEROL, IODIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2014-01-03 Release date: 2014-03-05 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum. Plos Pathog., 11, 2015
4OA8	X-ray crystal structure of O-methyltransferase from Anaplasma phagocytophilum in apo form Descriptor: 1,2-ETHANEDIOL, O-methyltransferase family protein, SODIUM ION Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2014-01-03 Release date: 2014-01-15 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum. Plos Pathog., 11, 2015
7RHO	Human IgG1 Fc fragment, hinge-free, expressed in E. coli Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Fc fragment of human IgG1 Authors: Gallagher, D.T. Deposit date: 2021-07-18 Release date: 2022-11-09 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Effects of glycans and hinge on dynamics in the IgG1 Fc. J.Biomol.Struct.Dyn., 2023
7AER	Rebuilt and re-refined PDB entry 5yep: tri-AMPylated Shewanella oneidensis HEPN toxin in complex with MNT antitoxin Descriptor: ADENOSINE MONOPHOSPHATE, Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family Authors: Tamulaitiene, G, Sasnauskas, G, Songailiene, I, Juozapaitis, J, Siksnys, V. Deposit date: 2020-09-18 Release date: 2020-12-30 Method: X-RAY DIFFRACTION (3 Å) Cite: HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation. Mol.Cell, 80, 2020
8TIX	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 5' terminal phosphates and crosslinked with EDC. Descriptor: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'), DNA (5'-D(A*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*G)-3'), MAGNESIUM ION, ... Authors: Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. Deposit date: 2023-07-20 Release date: 2023-08-02 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Tuning chemical DNA ligation within DNA crystals and co-crystals. To Be Published
8TIR	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 5' terminal phosphates. Descriptor: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'), DNA (5'-D(A*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*G)-3'), MAGNESIUM ION, ... Authors: Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. Deposit date: 2023-07-20 Release date: 2023-08-02 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (3.11 Å) Cite: Tuning chemical DNA ligation within DNA crystals and co-crystals. To Be Published

<891011121314151617181920212223>