PDB: 47120 resultsInfo pagesStatus searchChemie searchBIRD

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4AFE	Nek2 bound to hybrid compound 21 Descriptor: 1,2-ETHANEDIOL, 4-(2-AMINO-5-{4-[(DIMETHYLAMINO)METHYL]THIOPHEN-2-YL}PYRIDIN-3-YL)-2-{[(1R,2Z)-4,4,4-TRIFLUORO-1-METHYLBUT-2-EN-1-YL]OXY}BENZAMIDE, SERINE/THREONINE-PROTEIN KINASE NEK2 Authors: Yeoh, S, Innocenti, P, Hoelder, S, Bayliss, R. Deposit date: 2012-01-19 Release date: 2012-04-25 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.597 Å) Cite: Design of Potent and Selective Hybrid Inhibitors of the Mitotic Kinase Nek2: Structure-Activity Relationship, Structural Biology, and Cellular Activity. J.Med.Chem., 55, 2012
5UYY	Crystal structure of prephenate dehydrogenase tyrA from Bacillus anthracis in complex with L-tyrosine Descriptor: Prephenate dehydrogenase, TYROSINE Authors: Shabalin, I.G, Hou, J, Cymborowski, M.T, Kwon, K, Christendat, D, Gritsunov, A.O, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2017-02-24 Release date: 2017-03-08 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain. Febs J., 287, 2020
1ZXI	Reconstituted CO dehydrogenase from Oligotropha carboxidovorans Descriptor: COPPER (II) ION, CU(I)-S-MO(VI)(=O)OH CLUSTER, Carbon monoxide dehydrogenase large chain, ... Authors: Resch, M, Dobbek, H, Meyer, O. Deposit date: 2005-06-08 Release date: 2005-10-11 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and functional reconstruction in situ of the [CuSMoO(2)] active site of carbon monoxide dehydrogenase from the carbon monoxide oxidizing eubacterium Oligotropha carboxidovorans J.Biol.Inorg.Chem., 10, 2005
4APN	Structure of TR from Leishmania infantum in complex with a diarylpirrole-based inhibitor Descriptor: 4-[[1-(4-ethylphenyl)-2-methyl-5-(4-methylsulfanylphenyl)pyrrol-3-yl]methyl]thiomorpholine, FLAVIN-ADENINE DINUCLEOTIDE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... Authors: Baiocco, P, Ilari, A, Colotti, G, Biava, M. Deposit date: 2012-04-04 Release date: 2013-04-17 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Inhibition of Leishmania Infantum Trypanothione Reductase by Azole-Based Compounds: A Comparative Analysis with its Physiological Substrate by X-Ray Crystallography. Chemmedchem, 8, 2013
5BN8	Crystal structure of nucleotide-free human Hsp70 NBD. Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, Heat shock 70 kDa protein 1A, ... Authors: Narayanan, D, Engh, R.A. Deposit date: 2015-05-25 Release date: 2016-09-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.34 Å) Cite: Nucleotide binding to variants of the HSP70-NBD. To Be Published
5VCA	VCP like ATPase from T. acidophilum (VAT)-Substrate bound conformation Descriptor: VCP-like ATPase Authors: Ripstein, Z.A, Huang, R, Augustyniak, R, Kay, L.E, Rubinstein, J.L. Deposit date: 2017-03-31 Release date: 2017-04-26 Last modified: 2020-01-15 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Structure of a AAA+ unfoldase in the process of unfolding substrate. Elife, 6, 2017
4A0A	Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.6 A resolution (CPD 3) Descriptor: 5'-D(*CP*CP*TP*GP*CP*TP*CP*CP*TP*TP*TP*CP*AP*CP*CP*C)-3', 5'-D(*GP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*DGP)-3', CALCIUM ION, ... Authors: Scrima, A, Fischer, E.S, Iwai, S, Gut, H, Thoma, N.H. Deposit date: 2011-09-08 Release date: 2011-11-30 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.6 Å) Cite: The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation Cell(Cambridge,Mass.), 147, 2011
5BSU	Crystal structure of 4-coumarate:CoA ligase complexed with caffeoyl adenylate Descriptor: 4-coumarate--CoA ligase 2, 5'-O-[(R)-{[(2E)-3-(3,4-dioxocyclohexa-1,5-dien-1-yl)prop-2-enoyl]oxy}(hydroxy)phosphoryl]adenosine, GLYCEROL, ... Authors: Li, Z, Nair, S.K. Deposit date: 2015-06-02 Release date: 2016-05-11 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural Basis for Specificity and Flexibility in a Plant 4-Coumarate:CoA Ligase. Structure, 23, 2015
5UK3	Crystal structure of cyanase from T. urticae Descriptor: Uncharacterized protein Authors: Schlachter, C.R, Chruszcz, M. Deposit date: 2017-01-19 Release date: 2017-06-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural Characterization of a Eukaryotic Cyanase from Tetranychus urticae. J. Agric. Food Chem., 65, 2017
5V1B	Structure of PHD1 in complex with 1,2,4-Triazolo-[1,5-a]pyridine Descriptor: 4-([1,2,4]triazolo[1,5-a]pyridin-5-yl)benzonitrile, Egl nine homolog 2, FE (III) ION, ... Authors: Skene, R.J. Deposit date: 2017-03-01 Release date: 2017-06-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.49 Å) Cite: 1,2,4-Triazolo-[1,5-a]pyridine HIF Prolylhydroxylase Domain-1 (PHD-1) Inhibitors With a Novel Monodentate Binding Interaction. J. Med. Chem., 60, 2017
5BQY	Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6) in complex with avian-like receptor LSTa Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ni, F, Kondrashkina, E, Wang, Q. Deposit date: 2015-05-29 Release date: 2015-08-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.78 Å) Cite: Structural and Functional Studies of Influenza Virus A/H6 Hemagglutinin. Plos One, 7, 2015
1ZUG	STRUCTURE OF PHAGE 434 CRO PROTEIN, NMR, 20 STRUCTURES Descriptor: PHAGE 434 CRO PROTEIN Authors: Padmanabhan, S, Jimenez, M.A, Gonzalez, C, Sanz, J.M, Gimenez-Gallego, G, Rico, M. Deposit date: 1997-03-14 Release date: 1997-07-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Three-dimensional solution structure and stability of phage 434 Cro protein. Biochemistry, 36, 1997
1ZQH	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 7.5 Descriptor: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-12 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
5GY2	Crystal structure of a complex between Bacillus subtilis flagellin and zebrafish Toll-like receptor 5 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Flagellin, ... Authors: Song, W.S, Yoon, S.I. Deposit date: 2016-09-21 Release date: 2017-02-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A conserved TLR5 binding and activation hot spot on flagellin Sci Rep, 7, 2017
1ZQD	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) Descriptor: CALCIUM ION, DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-12 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
1ZQT	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND ZNCL2 (0.02 MILLIMOLAR) Descriptor: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-12 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3.4 Å) Cite: A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta Biochemistry, 35, 1996
1ZQI	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) Descriptor: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), POTASSIUM ION, ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-12 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
1ZQC	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) Descriptor: CALCIUM ION, DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-12 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
5V33	R. sphaeroides photosythetic reaction center mutant - Residue L223, Ser to Trp - Room Temperature Structure Solved on X-ray Transparent Microfluidic Chip Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ... Authors: Schieferstein, J.M, Pawate, A.S, Sun, C, Wan, F, Broecker, J, Ernst, O.P, Gennis, R.B, Kenis, P.J.A. Deposit date: 2017-03-06 Release date: 2017-04-12 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.487 Å) Cite: X-ray transparent microfluidic chips for high-throughput screening and optimization of in meso membrane protein crystallization. Biomicrofluidics, 11, 2017
5GKI	Structure of EndoMS-dsDNA3 complex Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*GP*CP*CP*TP*AP*GP*GP*TP*CP*CP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*GP*GP*GP*GP*CP*CP*TP*AP*GP*GP*C)-3'), ... Authors: Nakae, S, Hijikata, A, Tsuji, T, Yonezawa, K, Kouyama, K, Mayanagi, K, Ishino, S, Ishino, Y, Shirai, T. Deposit date: 2016-07-04 Release date: 2016-11-02 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease Structure, 24, 2016
5UOE	Crystal Structure Analysis of Elbow-Engineered-Fab-Bound Human Insulin Degrading Enzyme (IDE) Descriptor: FAB Heavy chain with engineered elbow, FAB light chain, Insulin-degrading enzyme Authors: Liang, W.G, Bailey, L, Kossiakoff, T, Tang, W.J. Deposit date: 2017-01-31 Release date: 2018-02-07 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Crystal Structure Analysis of Elbow-Engineered-Fab-Bound Human Insulin Degrading Enzyme (IDE) To Be Published
1ZQN	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR) Descriptor: BARIUM ION, DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-12 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
4A87	Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with naringenin. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, MAJOR POLLEN ALLERGEN BET V 1-A, NARINGENIN, ... Authors: Kofler, S, Brandstetter, H. Deposit date: 2011-11-18 Release date: 2012-05-30 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.24 Å) Cite: Crystallographically Mapped Ligand Binding Differs in High and Low Ige Binding Isoforms of Birch Pollen Allergen Bet V 1. J.Mol.Biol., 422, 2012
4A1N	Human Mitochondrial endo-exonuclease Descriptor: CHLORIDE ION, MAGNESIUM ION, NUCLEASE EXOG, ... Authors: Welin, M, Moche, M, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Graslund, S, Hammarstrom, M, Johansson, I, Karlberg, T, Kotenyova, T, Nyman, T, Persson, C, Schuler, H, Thorsell, A.G, Tresaugues, L, Weigelt, J, Nordlund, P. Deposit date: 2011-09-16 Release date: 2012-02-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Human Mitochondrial Endo-Exonuclease To be Published
5B5P	Crystal structure of the catalytic domain of MMP-13 complexed with 4-oxo-N-(3-(2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy)benzyl)-3,4-dihydroquinazoline-2-carboxamide Descriptor: 4-oxo-N-{3-[2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy]benzyl}-3,4-dihydroquinazoline-2-carboxamide, CALCIUM ION, Collagenase 3, ... Authors: Oki, H, Tanaka, Y. Deposit date: 2016-05-13 Release date: 2017-01-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Discovery of Novel, Highly Potent, and Selective Matrix Metalloproteinase (MMP)-13 Inhibitors with a 1,2,4-Triazol-3-yl Moiety as a Zinc Binding Group Using a Structure-Based Design Approach J. Med. Chem., 60, 2017

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