Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3DVQ
DownloadVisualize
BU of 3dvq by Molmil
Proteinase K by LB nanotemplate method before high X-Ray dose on ESRF ID14-2 beamline
Descriptor: CALCIUM ION, Proteinase K
Authors:Pechkova, E, Tripathi, S.K, Nicolini, C.
Deposit date:2008-07-20
Release date:2009-07-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Radiation damage in protein structural characterization by Synchrotron Radiation: State of the art and Nanotechnology-based perspective
To be Published
3DW1
DownloadVisualize
BU of 3dw1 by Molmil
Proteinase K by LB nanotemplate method after the third step high X-Ray dose on ESRF ID14-2 beamline
Descriptor: CALCIUM ION, Proteinase K
Authors:Pechkova, E, Tripathi, S.K, Nicolini, C.
Deposit date:2008-07-21
Release date:2009-07-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Radiation damage in protein structural characterization by Synchrotron Radiation: State of the art and Nanotechnology-based perspective
To be Published
3DVK
DownloadVisualize
BU of 3dvk by Molmil
Crystal Structure of Ca2+/CaM-CaV2.3 IQ domain complex
Descriptor: CALCIUM ION, Calmodulin, Voltage-dependent R-type calcium channel subunit alpha-1E
Authors:Kim, E.Y, Rumpf, C.H, Fujiwara, Y, Cooley, E.S, Van Petegem, F, Minor, D.L.
Deposit date:2008-07-18
Release date:2008-11-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of Ca(V)2 Ca(2+)/CaM-IQ Domain Complexes Reveal Binding Modes that Underlie Calcium-Dependent Inactivation and Facilitation.
Structure, 16, 2008
3DYI
DownloadVisualize
BU of 3dyi by Molmil
Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
Descriptor: CHLORIDE ION, Esterase D
Authors:Bennett, M.D, Delabre, M.-L, Holland, R, Norris, G.E.
Deposit date:2008-07-28
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
To be Published
3DZO
DownloadVisualize
BU of 3dzo by Molmil
Crystal structure of a rhoptry kinase from toxoplasma gondii
Descriptor: MAGNESIUM ION, Rhoptry kinase domain
Authors:Wernimont, A.K, Lam, A, Ali, A, Lin, Y.H, Ni, S, Ravichandran, M, Wasney, G, Vedadi, M, Kozieradzki, I, Schapira, M, Bochkarev, A, Wilkstrom, M, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Sibley, D, Hui, R, Qiu, W, Structural Genomics Consortium (SGC)
Deposit date:2008-07-30
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel structural and regulatory features of rhoptry secretory kinases in Toxoplasma gondii.
Embo J., 28, 2009
3DWY
DownloadVisualize
BU of 3dwy by Molmil
Crystal Structure of the Bromodomain of Human CREBBP
Descriptor: 1,2-ETHANEDIOL, CREB-binding protein
Authors:Filippakopoulos, P, Picaud, S, Fedorov, O, Karim, R, Pike, A.C.W, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Wickstroem, M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2008-07-23
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell(Cambridge,Mass.), 149, 2012
3E1W
DownloadVisualize
BU of 3e1w by Molmil
H. influenzae beta-carbonic anhydrase, variant D44N in 100 mM sodium bicarbonate
Descriptor: Carbonic anhydrase 2, ZINC ION
Authors:Rowlett, R.S.
Deposit date:2008-08-04
Release date:2009-06-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Allosteric site variants of Haemophilus influenzae beta-carbonic anhydrase.
Biochemistry, 48, 2009
3DQN
DownloadVisualize
BU of 3dqn by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 500 Atmospheres: Structure 3 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3E19
DownloadVisualize
BU of 3e19 by Molmil
Crystal Structure of Iron Uptake Regulatory Protein (FeoA) Solved by Sulfur SAD in a Monoclinic Space Group
Descriptor: FeoA, GLYCEROL, PHOSPHATE ION
Authors:Hughes, R.C, Li, Y, Wang, B.-C, Liu, Z.-J, Ng, J.D.
Deposit date:2008-08-02
Release date:2008-12-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic Structure Determination of Iron Uptake Regulatory Protein (FeoA) by Sulfur SAD in a Monoclinic Space Group
To be Published
3DV6
DownloadVisualize
BU of 3dv6 by Molmil
Crystal structure of SAG506-01, tetragonal, crystal 2
Descriptor: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, Ig-like protein, MAGNESIUM ION, ...
Authors:Brooks, C.L, Blackler, R.J, Gerstenbruch, S, Kosma, P, Muller-Loennies, S, Brade, H, Evans, S.V.
Deposit date:2008-07-18
Release date:2008-12-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Pseudo-symmetry and twinning in crystals of homologous antibody Fv fragments.
Acta Crystallogr.,Sect.D, 64, 2008
3DX7
DownloadVisualize
BU of 3dx7 by Molmil
Crystal Structure of HLA-B*4403 presenting 10mer EBV antigen
Descriptor: ACETATE ION, Beta-2-microglobulin, EBV decapeptide epitope, ...
Authors:Archbold, J.K, Ely, L.K, Rossjohn, J.
Deposit date:2008-07-23
Release date:2009-01-27
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Natural micropolymorphism in human leukocyte antigens provides a basis for genetic control of antigen recognition.
J.Exp.Med., 206, 2009
3DXN
DownloadVisualize
BU of 3dxn by Molmil
Crystal structure of the calcium-dependent kinase from toxoplasma gondii, 541.m00134, kinase domain.
Descriptor: Calmodulin-like domain protein kinase isoform 3
Authors:Wernimont, A.K, Lew, J, Kozieradzki, I, Cossar, D, Wasney, G, Lin, Y.H, Hassani, A, Ali, A, Schapira, M, Bochkarev, A, Arrowsmith, C.H, Bountra, C, Wikstrom, M, Edwards, A.M, Hui, R, Artz, J.D, Amani, M, Structural Genomics Consortium (SGC)
Deposit date:2008-07-24
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Crystal structure of the calcium-dependent kinase from toxoplasma gondii, 541.m00134, kinase domain.
To be Published
3EK7
DownloadVisualize
BU of 3ek7 by Molmil
Calcium-saturated GCaMP2 dimer
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Akerboom, J, Velez Rivera, J.D, Looger, L.L, Schreiter, E.R.
Deposit date:2008-09-18
Release date:2008-12-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design
J.Biol.Chem., 284, 2009
3E2H
DownloadVisualize
BU of 3e2h by Molmil
Structure of the m67 high-affinity mutant of the 2C TCR in complex with Ld/QL9
Descriptor: H-2 class I histocompatibility antigen, L-D alpha chain, M67 TCR beta chain, ...
Authors:Colf, L.A, Garcia, K.C.
Deposit date:2008-08-05
Release date:2008-11-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Distinct CDR3 Conformations in TCRs Determine the Level of Cross-Reactivity for Diverse Antigens, but Not the Docking Orientation
J.Immunol., 181, 2008
3E28
DownloadVisualize
BU of 3e28 by Molmil
H. influenzae beta-carbonic anhydrase, variant Y181F
Descriptor: Carbonic anhydrase 2, SULFATE ION, ZINC ION
Authors:Rowlett, R.S, Lee, J.
Deposit date:2008-08-05
Release date:2009-06-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Allosteric site variants of Haemophilus influenzae beta-carbonic anhydrase.
Biochemistry, 48, 2009
3E3Z
DownloadVisualize
BU of 3e3z by Molmil
Crystal structure of bovine coupling Factor B bound with phenylarsine oxide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ATP synthase subunit s, mitochondrial, ...
Authors:Stroud, R.M, Lee, J.K, Belogrudov, G.I.
Deposit date:2008-08-08
Release date:2008-08-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of bovine mitochondrial factor B at 0.96-A resolution.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3E74
DownloadVisualize
BU of 3e74 by Molmil
Crystal structure of E. coli allantoinase with iron ions at the metal center
Descriptor: Allantoinase, FE (III) ION
Authors:Kim, K.
Deposit date:2008-08-17
Release date:2009-02-24
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of metal-dependent allantoinase from Escherichia coli
J.Mol.Biol., 387, 2009
3E83
DownloadVisualize
BU of 3e83 by Molmil
Crystal Structure of the the open NaK channel pore
Descriptor: CESIUM ION, Potassium channel protein, SODIUM ION
Authors:Jiang, Y, Alam, A.
Deposit date:2008-08-19
Release date:2008-12-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of ion selectivity in the NaK channel
Nat.Struct.Mol.Biol., 16, 2009
3E8H
DownloadVisualize
BU of 3e8h by Molmil
Crystal Structure of the the open NaK channel-K+ complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, POTASSIUM ION, Potassium channel protein
Authors:Jiang, Y, Alam, A.
Deposit date:2008-08-19
Release date:2008-12-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of ion selectivity in the NaK channel
Nat.Struct.Mol.Biol., 16, 2009
3E9C
DownloadVisualize
BU of 3e9c by Molmil
Structure of a tryptic core fragment of TIGAR from Danio rerio
Descriptor: POTASSIUM ION, Zgc:56074
Authors:Li, H, Jogl, G.
Deposit date:2008-08-21
Release date:2008-12-16
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:TIGAR (TP53 induced glycolysis and apoptosis regulator) is a fructose-2,6- and fructose-1,6-bisphosphatase
To be Published
3EA3
DownloadVisualize
BU of 3ea3 by Molmil
Crystal Structure of the Y246S/Y247S/Y248S/Y251S Mutant of Phosphatidylinositol-Specific Phospholipase C from Bacillus Thuringiensis
Descriptor: 1-phosphatidylinositol phosphodiesterase, MANGANESE (II) ION
Authors:Shi, X, Shao, C, Zhang, X, Zambonelli, C, Redfied, A.G, Head, J.F, Seaton, B.A, Roberts, M.F.
Deposit date:2008-08-24
Release date:2009-04-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Modulation of Bacillus thuringiensis Phosphatidylinositol-specific Phospholipase C Activity by Mutations in the Putative Dimerization Interface.
J.Biol.Chem., 284, 2009
3EI0
DownloadVisualize
BU of 3ei0 by Molmil
Structure of the E221A mutant of the Gloebacter violaceus pentameric ligand gated ion channnel (GLIC)
Descriptor: Glr4197 protein
Authors:Hilf, R.J.C, Dutzler, R.
Deposit date:2008-09-15
Release date:2008-11-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel
Nature, 457, 2008
3EKT
DownloadVisualize
BU of 3ekt by Molmil
Crystal Structure of the inhibitor Darunavir (DRV) in complex with a multi-drug resistant HIV-1 protease variant (L10F/G48V/I54V/V64I/V82A) (Refer: FLAP+ in citation.)
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, ACETATE ION, PHOSPHATE ION, ...
Authors:Prabu-Jeyabalan, M, King, N.M, Bandaranayake, R.M.
Deposit date:2008-09-19
Release date:2009-09-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Extreme Entropy-Enthalpy Compensation in a Drug-Resistant Variant of HIV-1 Protease.
Acs Chem.Biol., 7, 2012
3E2L
DownloadVisualize
BU of 3e2l by Molmil
Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)
Descriptor: Beta-lactamase inhibitory protein, Carbapenemase
Authors:Hanes, M.S, Jude, K.M, Berger, J.M, Kirsch, J.F, Bonomo, R.A, Handel, T.M.
Deposit date:2008-08-05
Release date:2009-08-04
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural and biochemical characterization of the interaction between KPC-2 beta-lactamase and beta-lactamase inhibitor protein
Biochemistry, 48, 2009
3E55
DownloadVisualize
BU of 3e55 by Molmil
Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser off
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Tomita, A, Sato, T, Ichiyanagi, K, Nozawa, S, Ichikawa, H, Chollet, M, Kawai, F, Park, S.-Y, Koshihara, S, Adachi, S.
Deposit date:2008-08-13
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin
Proc.Natl.Acad.Sci.USA, 106, 2009

223532

數據於2024-08-07公開中

PDB statisticsPDBj update infoContact PDBjnumon