PDB: 59042 resultsInfo pagesStatus searchChemie searchBIRD

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9B61	GluA2 flip Q in complex with TARPgamma2 at pH5, consensus structure of LBD-TMD-TARPgamma2 Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 31, 2024
4U5G	Crystal structure of con-ikot-ikot toxin Descriptor: Con-ikot-ikot, ZINC ION Authors: Chen, L, Gouaux, E. Deposit date: 2014-07-25 Release date: 2014-08-13 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.1997 Å) Cite: X-ray structures of AMPA receptor-cone snail toxin complexes illuminate activation mechanism. Science, 345, 2014
4U5H	crystal structure of con-ikot-ikot toxin Descriptor: Con-ikot-ikot Authors: Chen, L, Gouaux, E. Deposit date: 2014-07-25 Release date: 2014-08-13 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.58 Å) Cite: X-ray structures of AMPA receptor-cone snail toxin complexes illuminate activation mechanism. Science, 345, 2014
6I7G	Crystal structure of dimeric wild type FICD complexed with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Adenosine monophosphate-protein transferase FICD, DI(HYDROXYETHYL)ETHER, ... Authors: Perera, L.A, Yan, Y, Read, R.J, Ron, D. Deposit date: 2018-11-16 Release date: 2019-09-25 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.7 Å) Cite: An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP. Embo J., 38, 2019
1L0G	X-ray Crystal Structure of AmpC S64G Mutant beta-Lactamase Descriptor: PHOSPHATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, beta-lactamase Authors: Beadle, B.M, Shoichet, B.K. Deposit date: 2002-02-09 Release date: 2002-08-14 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural bases of stability-function tradeoffs in enzymes. J.Mol.Biol., 321, 2002
1LL5	X-ray crystal structure of AmpC WT beta-lactamase in complex with covalently bound imipenem Descriptor: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid, beta-lactamase Authors: Beadle, B.M, Shoichet, B.K. Deposit date: 2002-04-26 Release date: 2002-11-27 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis for Imipenem Inhibition of Class C beta-lactamases ANTIMICROB.AGENTS CHEMOTHER., 46, 2002
6I7J	Crystal structure of monomeric FICD mutant L258D Descriptor: Adenosine monophosphate-protein transferase FICD, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ... Authors: Perera, L.A, Yan, Y, Read, R.J, Ron, D. Deposit date: 2018-11-16 Release date: 2019-09-25 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.65 Å) Cite: An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP. Embo J., 38, 2019
6I7K	Crystal structure of monomeric FICD mutant L258D complexed with MgATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Adenosine monophosphate-protein transferase FICD, ETHANOL, ... Authors: Perera, L.A, Yan, Y, Read, R.J, Ron, D. Deposit date: 2018-11-16 Release date: 2019-09-25 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.54 Å) Cite: An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP. Embo J., 38, 2019
6I7H	Crystal structure of dimeric FICD mutant K256S Descriptor: Adenosine monophosphate-protein transferase FICD, MAGNESIUM ION Authors: Perera, L.A, Yan, Y, Read, R.J, Ron, D. Deposit date: 2018-11-16 Release date: 2019-09-25 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.25 Å) Cite: An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP. Embo J., 38, 2019
6I7I	Crystal structure of dimeric FICD mutant K256A complexed with MgATP Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ADENOSINE-5'-TRIPHOSPHATE, Adenosine monophosphate-protein transferase FICD, ... Authors: Perera, L.A, Yan, Y, Read, R.J, Ron, D. Deposit date: 2018-11-16 Release date: 2019-09-25 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.33 Å) Cite: An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP. Embo J., 38, 2019
3SOG	Crystal structure of the BAR domain of human Amphiphysin, isoform 1 Descriptor: 1,2-ETHANEDIOL, Amphiphysin, POTASSIUM ION Authors: Allerston, C.K, Krojer, T, Chaikuad, A, Cooper, C.D.O, Berridge, G, Savitsky, P, Vollmar, M, von Delft, F, Arrowsmith, C.H, Weigelt, J, Edwards, A, Bountra, C, Gileadi, O, Structural Genomics Consortium (SGC) Deposit date: 2011-06-30 Release date: 2011-07-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite:
4U5C	Crystal structure of GluA2, con-ikot-ikot snail toxin, partial agonist FW and postitive modulator (R,R)-2b complex Descriptor: 2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Con-ikot-ikot, ... Authors: Chen, L, Gouaux, E. Deposit date: 2014-07-25 Release date: 2014-08-13 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (3.6883 Å) Cite: X-ray structures of AMPA receptor-cone snail toxin complexes illuminate activation mechanism. Science, 345, 2014
4U5E	Crystal structure of GluA2 T625G, con-ikot-ikot snail toxin, partial agonist KA and postitive modulator (R,R)-2b complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE, Con-ikot-ikot, ... Authors: Chen, L, Gouaux, E. Deposit date: 2014-07-25 Release date: 2014-08-13 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (3.5073 Å) Cite: X-ray structures of AMPA receptor-cone snail toxin complexes illuminate activation mechanism. Science, 345, 2014
4U5B	Crystal structure of GluA2 A622T, con-ikot-ikot snail toxin, partial agonist KA and postitive modulator (R,R)-2b complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE, Con-ikot-ikot, ... Authors: Chen, L, Gouaux, E. Deposit date: 2014-07-25 Release date: 2014-08-13 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (3.5037 Å) Cite: X-ray structures of AMPA receptor-cone snail toxin complexes illuminate activation mechanism. Science, 345, 2014
4U5F	Crystal structure of GluA2, con-ikot-ikot snail toxin, partial agonist KA and postitive modulator (R,R)-2b complex, GluA2cryst2 construct Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE, Con-ikot-ikot, ... Authors: Chen, L, Gouaux, E. Deposit date: 2014-07-24 Release date: 2014-08-13 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (3.7 Å) Cite: X-ray structures of AMPA receptor-cone snail toxin complexes illuminate activation mechanism. Science, 345, 2014
6JRQ	Crystal structure of adenylosuccinate synthetase, PurA, from Thermus thermophilus Descriptor: 1,2-ETHANEDIOL, Adenylosuccinate synthetase, INOSINIC ACID Authors: Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2019-04-05 Release date: 2020-04-08 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of adenylosuccinate synthetase, PurA, from Thermus thermophilus HB8 To Be Published
8XEP	Crystal structure of a Legionella pneumophila type IV effector in complex with ubiquitin Descriptor: SULFATE ION, Type IV effector MavL, Ubiquitin Authors: Tan, J.X, Wang, X.F, Zhou, Y, Zhu, Y.Q. Deposit date: 2023-12-12 Release date: 2024-05-01 Last modified: 2024-07-24 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Legionella effector LnaB is a phosphoryl AMPylase that impairs phosphosignalling. Nature, 631, 2024
7OCA	Resting state full-length GluA1/A2 heterotertramer in complex with TARP gamma 8 and CNIH2 Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Zhang, D, Watson, J.F, Matthews, P.M, Cais, O, Greger, I.H. Deposit date: 2021-04-26 Release date: 2021-06-09 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Gating and modulation of a hetero-octameric AMPA glutamate receptor. Nature, 594, 2021
6QKZ	Full length GluA1/2-gamma8 complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6-nitro-2,3-bis(oxidanylidene)-1,4-dihydrobenzo[f]quinoxaline-7-sulfonamide, ... Authors: Herguedas, B, Garcia-Nafria, J, Greger, I.G. Deposit date: 2019-01-30 Release date: 2019-03-27 Last modified: 2025-04-09 Method: ELECTRON MICROSCOPY (6.3 Å) Cite: Architecture of the heteromeric GluA1/2 AMPA receptor in complex with the auxiliary subunit TARP gamma 8. Science, 364, 2019
6QKC	GluA1/2 In complex with auxiliary subunit gamma-8 Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 6-nitro-2,3-bis(oxidanylidene)-1,4-dihydrobenzo[f]quinoxaline-7-sulfonamide, Glutamate receptor 1, ... Authors: Herguedas, B, Garcia-Nafria, J, Greger, I.G. Deposit date: 2019-01-28 Release date: 2019-03-27 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Architecture of the heteromeric GluA1/2 AMPA receptor in complex with the auxiliary subunit TARP gamma 8. Science, 364, 2019
7OCC	NTD of resting state GluA1/A2 heterotertramer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor 1, ... Authors: Zhang, D, Watson, J.F, Matthews, P.M, Cais, O, Greger, I.H. Deposit date: 2021-04-26 Release date: 2021-06-09 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Gating and modulation of a hetero-octameric AMPA glutamate receptor. Nature, 594, 2021
7OCD	Resting state GluA1/A2 heterotetramer in complex with auxiliary subunit TARP gamma 8 (LBD-TMD) Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 6-nitro-2,3-bis(oxidanylidene)-1,4-dihydrobenzo[f]quinoxaline-7-sulfonamide, Glutamate receptor 2, ... Authors: Zhang, D, Watson, J.F, Matthews, P.M, Cais, O, Greger, I.H. Deposit date: 2021-04-26 Release date: 2021-06-09 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Gating and modulation of a hetero-octameric AMPA glutamate receptor. Nature, 594, 2021
2AYI	Wild-type AmpT from Thermus thermophilus Descriptor: Aminopeptidase T, ZINC ION Authors: Odintsov, S.G, Sabala, I, Bourenkov, G, Rybin, V, Bochtler, M. Deposit date: 2005-09-07 Release date: 2005-11-08 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Substrate Access to the Active Sites in Aminopeptidase T, a Representative of a New Metallopeptidase Clan. J.Mol.Biol., 354, 2005
7QHB	Active state of GluA1/2 in complex with TARP gamma 8, L-glutamate and CTZ Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate, CYCLOTHIAZIDE, ... Authors: Herguedas, B, Kohegyi, B, Zhang, D, Greger, I.H. Deposit date: 2021-12-11 Release date: 2022-02-23 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Mechanisms underlying TARP modulation of the GluA1/2-gamma 8 AMPA receptor. Nat Commun, 13, 2022
7OOD	Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells Descriptor: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... Authors: Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. Deposit date: 2021-05-27 Release date: 2022-05-25 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022

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