3GXV
 
 | | Three-dimensional structure of N-terminal domain of DnaB Helicase from Helicobacter pylori and its interactions with primase | | Descriptor: | Replicative DNA helicase | | Authors: | Kashav, T, Nitharwal, R, Syed, A.A, Gabdoulkhakov, A, Saenger, W, Dhar, K.S, Gourinath, S. | | Deposit date: | 2009-04-03 | | Release date: | 2010-01-26 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Three-dimensional structure of N-terminal domain of DnaB helicase and helicase-primase interactions in Helicobacter pylori
Plos One, 4, 2009
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4TUG
 | | Crystal structure of MjMre11-DNA2 complex | | Descriptor: | DNA (5'-D(P*CP*TP*GP*TP*CP*CP*TP*AP*CP*GP*TP*GP*CP*CP*A)-3'), DNA (5'-D(P*GP*CP*AP*CP*GP*TP*AP*GP*GP*AP*CP*AP*GP*C)-3'), DNA double-strand break repair protein Mre11, ... | | Authors: | Sung, S, Cho, Y. | | Deposit date: | 2014-06-24 | | Release date: | 2014-10-15 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (3.55 Å) | | Cite: | DNA end recognition by the Mre11 nuclease dimer: insights into resection and repair of damaged DNA.
Embo J., 33, 2014
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4TUI
 | | Crystal structure of MjMre11-DNA1 complex | | Descriptor: | DNA (5'-D(P*TP*CP*CP*TP*AP*CP*GP*TP*GP*CP*CP*AP*G)-3'), DNA (5'-D(P*TP*GP*GP*CP*AP*CP*GP*TP*AP*GP*GP*AP*C)-3'), DNA double-strand break repair protein Mre11 | | Authors: | Sung, S, Cho, Y. | | Deposit date: | 2014-06-24 | | Release date: | 2014-10-15 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (3.59 Å) | | Cite: | DNA end recognition by the Mre11 nuclease dimer: insights into resection and repair of damaged DNA.
Embo J., 33, 2014
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8ZP4
 | | Cryo-EM structure of origin recognition complex (Orc1 to 5) with ARS1 DNA bound | | Descriptor: | DNA (31-MER), MAGNESIUM ION, Origin recognition complex subunit 1, ... | | Authors: | Lam, W.H, Yu, D, Dang, S, Zhai, Y. | | Deposit date: | 2024-05-29 | | Release date: | 2025-04-16 | | Method: | ELECTRON MICROSCOPY (3.33 Å) | | Cite: | DNA bending mediated by ORC is essential for replication licensing in budding yeast.
Proc.Natl.Acad.Sci.USA, 122, 2025
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8ZPK
 | | Cryo-EM structure of origin recognition complex (Orc6 with residues 1 to 270 deleted) with ARS1 DNA bound | | Descriptor: | DNA (38-MER), DNA (40-MER), MAGNESIUM ION, ... | | Authors: | Lam, W.H, Yu, D, Dang, S, Zhai, Y. | | Deposit date: | 2024-05-30 | | Release date: | 2025-04-16 | | Method: | ELECTRON MICROSCOPY (3.21 Å) | | Cite: | DNA bending mediated by ORC is essential for replication licensing in budding yeast.
Proc.Natl.Acad.Sci.USA, 122, 2025
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8ZP5
 | | Cryo-EM structure of origin recognition complex (Orc5 basic patch mutations) with ARS1 DNA bound | | Descriptor: | DNA (34-MER), DNA (35-MER), MAGNESIUM ION, ... | | Authors: | Lam, W.H, Yu, D, Dang, S, Zhai, Y. | | Deposit date: | 2024-05-29 | | Release date: | 2025-04-16 | | Method: | ELECTRON MICROSCOPY (2.98 Å) | | Cite: | DNA bending mediated by ORC is essential for replication licensing in budding yeast.
Proc.Natl.Acad.Sci.USA, 122, 2025
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8Q2M
 | | 18mer DNA mimic Foldamer with an Aliphatic linker in complex with Sac7d V26A/M29A protein | | Descriptor: | DNA mimic Foldamer, DNA-binding protein 7b | | Authors: | Deepak, D, Corvaglia, V, Wu, J, Huc, I. | | Deposit date: | 2023-08-02 | | Release date: | 2023-08-23 | | Last modified: | 2025-02-26 | | Method: | X-RAY DIFFRACTION (3.21 Å) | | Cite: | DNA Mimic Foldamer Recognition of a Chromosomal Protein.
Angew.Chem.Int.Ed.Engl., 64, 2025
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8QHM
 | | DNA mimic Foldamer with sticky ends | | Descriptor: | DNA mimic Foldamer | | Authors: | Deepak, D, Loos, M, Huc, I. | | Deposit date: | 2023-09-08 | | Release date: | 2023-10-11 | | Last modified: | 2024-09-04 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Enhancing the Features of DNA Mimic Foldamers for Structural Investigations.
Chemistry, 30, 2024
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8VXA
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8VXC
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1L8Q
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8KGN
 | | Structure of African swine fever virus topoisomerase II in complex with dsDNA | | Descriptor: | DNA (38-MER), DNA topoisomerase 2 | | Authors: | Cong, J, Xin, Y, Li, X, Chen, Y. | | Deposit date: | 2023-08-19 | | Release date: | 2024-04-03 | | Last modified: | 2025-06-18 | | Method: | ELECTRON MICROSCOPY (5.9 Å) | | Cite: | Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024
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8KGR
 | | Structure of African swine fever virus topoisomerase II in complex with dsDNA | | Descriptor: | DNA (32-MER), DNA (33-MER), DNA topoisomerase 2, ... | | Authors: | Cong, J, Xin, U, Li, X, Chen, Y. | | Deposit date: | 2023-08-19 | | Release date: | 2024-04-03 | | Last modified: | 2025-06-25 | | Method: | ELECTRON MICROSCOPY (3.2 Å) | | Cite: | Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024
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8KGM
 | | Structure of African swine fever virus topoisomerase II in complex with dsDNA | | Descriptor: | DNA (38-MER), DNA topoisomerase 2 | | Authors: | Cong, J, Xin, Y, Li, X, Chen, Y. | | Deposit date: | 2023-08-19 | | Release date: | 2024-04-03 | | Last modified: | 2025-06-18 | | Method: | ELECTRON MICROSCOPY (4.8 Å) | | Cite: | Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024
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8KGQ
 | | Structure of African swine fever virus topoisomerase II in complex with dsDNA | | Descriptor: | DNA (38-MER), DNA topoisomerase 2 | | Authors: | Cong, J, Xin, Y, Li, X, Chen, Y. | | Deposit date: | 2023-08-19 | | Release date: | 2024-04-03 | | Last modified: | 2025-07-02 | | Method: | ELECTRON MICROSCOPY (5.6 Å) | | Cite: | Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024
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6VAF
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6VAA
 | | Structure of the Fanconi Anemia ID complex bound to ICL DNA | | Descriptor: | DNA (26-MER), DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ... | | Authors: | Pavletich, N.P. | | Deposit date: | 2019-12-17 | | Release date: | 2020-03-18 | | Last modified: | 2024-03-06 | | Method: | ELECTRON MICROSCOPY (3.4 Å) | | Cite: | DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex.
Nature, 580, 2020
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8Y04
 | | Crystal structure of LbCas12a in complex with crRNA and 6nt target DNA | | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*AP*TP*T)-3'), DNA (5'-D(P*GP*AP*TP*GP*CP*GP*TP*AP*AP*AP*GP*GP*AP*CP*G)-3'), LbCas12a, ... | | Authors: | Lin, X, Chen, J, Liu, L. | | Deposit date: | 2024-01-22 | | Release date: | 2025-01-01 | | Last modified: | 2025-02-19 | | Method: | X-RAY DIFFRACTION (3.71 Å) | | Cite: | DNA target binding-induced pre-crRNA processing in type II and V CRISPR-Cas systems.
Nucleic Acids Res., 53, 2025
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8Y0A
 | | Crystal structure of LbCas12a in complex with crRNA and 18nt target DNA | | Descriptor: | DNA (27-MER), DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*AP*TP*T)-3'), LbCas12a, ... | | Authors: | Lin, X, Chen, J, Liu, L. | | Deposit date: | 2024-01-22 | | Release date: | 2025-01-01 | | Last modified: | 2025-02-19 | | Method: | X-RAY DIFFRACTION (3.51 Å) | | Cite: | DNA target binding-induced pre-crRNA processing in type II and V CRISPR-Cas systems.
Nucleic Acids Res., 53, 2025
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8Y06
 | | Crystal structure of LbCas12a in complex with crRNA and 12nt target DNA | | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*AP*TP*T)-3'), DNA (5'-D(P*TP*TP*AP*CP*TP*GP*GP*AP*TP*GP*CP*GP*TP*AP*AP*AP*GP*GP*AP*CP*G)-3'), LbCas12a, ... | | Authors: | Lin, X, Chen, J, Liu, L. | | Deposit date: | 2024-01-22 | | Release date: | 2025-01-01 | | Last modified: | 2025-02-19 | | Method: | X-RAY DIFFRACTION (3.99 Å) | | Cite: | DNA target binding-induced pre-crRNA processing in type II and V CRISPR-Cas systems.
Nucleic Acids Res., 53, 2025
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8Y09
 | | Crystal structure of LbCas12a in complex with crRNA and 15nt target DNA | | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*AP*TP*T)-3'), DNA (5'-D(P*CP*TP*TP*TP*AP*CP*TP*GP*GP*AP*TP*GP*CP*GP*TP*AP*AP*AP*GP*GP*AP*CP*G)-3'), LITHIUM ION, ... | | Authors: | Lin, X, Chen, J, Liu, L. | | Deposit date: | 2024-01-22 | | Release date: | 2025-01-01 | | Last modified: | 2025-02-19 | | Method: | X-RAY DIFFRACTION (2.87 Å) | | Cite: | DNA target binding-induced pre-crRNA processing in type II and V CRISPR-Cas systems.
Nucleic Acids Res., 53, 2025
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8Y07
 | | Crystal structure of LbCas12a in complex with crRNA and 13nt target DNA | | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*AP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*AP*CP*TP*GP*GP*AP*TP*GP*CP*GP*TP*AP*AP*AP*GP*GP*AP*CP*G)-3'), LITHIUM ION, ... | | Authors: | Lin, X, Chen, J, Liu, L. | | Deposit date: | 2024-01-22 | | Release date: | 2025-01-01 | | Last modified: | 2025-02-19 | | Method: | X-RAY DIFFRACTION (2.85 Å) | | Cite: | DNA target binding-induced pre-crRNA processing in type II and V CRISPR-Cas systems.
Nucleic Acids Res., 53, 2025
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8Y05
 | | Crystal structure of LbCas12a in complex with crRNA and 9nt target DNA | | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*AP*TP*T)-3'), DNA (5'-D(P*CP*TP*GP*GP*AP*TP*GP*CP*GP*TP*AP*AP*AP*GP*GP*AP*CP*G)-3'), LbCas12a, ... | | Authors: | Lin, X, Chen, J, Liu, L. | | Deposit date: | 2024-01-22 | | Release date: | 2025-01-01 | | Last modified: | 2025-02-19 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | DNA target binding-induced pre-crRNA processing in type II and V CRISPR-Cas systems.
Nucleic Acids Res., 53, 2025
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8Y08
 | | Crystal structure of LbCas12a in complex with crRNA and 14nt target DNA | | Descriptor: | DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*AP*TP*T)-3'), DNA (5'-D(P*CP*TP*TP*TP*AP*CP*TP*GP*GP*AP*TP*GP*CP*GP*TP*AP*AP*AP*GP*GP*AP*CP*G)-3'), LITHIUM ION, ... | | Authors: | Lin, X, Chen, J, Liu, L. | | Deposit date: | 2024-01-22 | | Release date: | 2025-01-01 | | Last modified: | 2025-02-19 | | Method: | X-RAY DIFFRACTION (3.64 Å) | | Cite: | DNA target binding-induced pre-crRNA processing in type II and V CRISPR-Cas systems.
Nucleic Acids Res., 53, 2025
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8Q9R
 | | Crystal structure of MADS-box/MEF2D N-terminal domain bound to dsDNA and HDAC9 deacetylase binding motif | | Descriptor: | Histone deacetylase 9 (HDAC9) binding motif peptide: EVKQKLQEFLLSKS, MADS box dsDNA: AACTATTTATAAGA, MADS box dsDNA: TCTTATAAATAGT, ... | | Authors: | Chinellato, M, Carli, A, Perin, S, Mazzoccato, Y, Di Giorgio, E, Brancolini, C, Angelini, A, Cendron, L. | | Deposit date: | 2023-08-20 | | Release date: | 2024-04-17 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | Folding of Class IIa HDAC Derived Peptides into alpha-helices Upon Binding to Myocyte Enhancer Factor-2 in Complex with DNA.
J.Mol.Biol., 436, 2024
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