PDB: 54422 resultsInfo pagesStatus searchChemie searchBIRD

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6SJG	Cryo-EM structure of the RecBCD no Chi negative control complex Descriptor: Forked DNA substrate, RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ... Authors: Cheng, K, Wilkinson, M, Wigley, D.B. Deposit date: 2019-08-13 Release date: 2020-01-01 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair. Nat.Struct.Mol.Biol., 27, 2020
6ZTE	Structure of a parallel c-myc modified with 5' duplex stem-loop and 3' diagonal snap-back loop Descriptor: DNA (36-MER) Authors: Vianney, Y.M, Weisz, K. Deposit date: 2020-07-20 Release date: 2020-10-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands. Chemistry, 26, 2020
6SEF	Class2C : CENP-A nucleosome in complex with CENP-C central region Descriptor: Centromere protein C, DNA (145-MER), Histone H2A type 2-A, ... Authors: Ali-Ahmad, A, Bilokapic, S, Schafer, I.B, Halic, M, Sekulic, N. Deposit date: 2019-07-29 Release date: 2019-08-14 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: CENP-C unwraps the human CENP-A nucleosome through the H2A C-terminal tail. Embo Rep., 20, 2019
9BB5	Backbone Modification in the GA Module of Protein PAB: ACPC residues at positions 22 and 26 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-08-21 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
9BB7	Backbone Modification in the GA Module of Protein PAB: ACPC residues at positions 5 and 39, beta3 residue at position 26 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-08-21 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
9BB1	Backbone Modification in the GA Module of Protein PAB: Wild-type Sequence Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-11-06 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
9BFL	Solution structure of the scorpion toxin omega-Buthitoxin-Hf1a Descriptor: Buthitoxin-Hf1a Authors: Rosengren, K.J, Payne, C.D. Deposit date: 2024-04-18 Release date: 2024-06-05 Method: SOLUTION NMR Cite: Novel Scorpion Toxin omega-Buthitoxin-Hf1a Selectively Inhibits Calcium Influx via Ca V 3.3 and Ca V 3.2 and Alleviates Allodynia in a Mouse Model of Acute Postsurgical Pain. Int J Mol Sci, 25, 2024
9BB6	Backbone Modification in the GA Module of Protein PAB: ACPC residues at positions 5 and 13, beta3 residue at position 9 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-08-21 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
9BB2	Backbone Modification in the GA Module of Protein PAB: beta3-residues at positions 20 and 24 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-08-21 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
9BB4	Backbone Modification in the GA Module of Protein PAB: beta3-residues at positions 23 and 26 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-08-21 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
1V5H	Crystal Structure of Human Cytoglobin (Ferric Form) Descriptor: Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE Authors: Sugimoto, H, Makino, M, Sawai, H, Kawada, N, Yoshizato, K, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-11-23 Release date: 2004-06-08 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural basis of human cytoglobin for ligand binding. J.Mol.Biol., 339, 2004
9BB3	Backbone Modification in the GA Module of Protein PAB: beta3-residues at positions 22 and 26 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-08-21 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
7Z24	Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with nevirapine Descriptor: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, DNA (38-mer), Reverse transcriptase/ribonuclease H Authors: Singh, A.K, Das, K. Deposit date: 2022-02-25 Release date: 2022-07-20 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.32 Å) Cite: Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA, 119, 2022
7Z2H	Cryo-EM structure of NNRTI resistant M184I/E138K mutant HIV-1 reverse transcriptase with a DNA aptamer in complex with doravirine Descriptor: 3-chloro-5-({1-[(4-methyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)methyl]-2-oxo-4-(trifluoromethyl)-1,2-dihydropyridin-3-yl}oxy)benzonitrile, DNA (38-MER), Reverse transcriptase/ribonuclease H, ... Authors: Singh, A.K, Das, K. Deposit date: 2022-02-27 Release date: 2022-07-20 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA, 119, 2022
7Z2G	Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with doravirine Descriptor: 3-chloro-5-({1-[(4-methyl-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)methyl]-2-oxo-4-(trifluoromethyl)-1,2-dihydropyridin-3-yl}oxy)benzonitrile, DNA (38-MER), Reverse transcriptase/ribonuclease H Authors: Singh, A.K, Das, K. Deposit date: 2022-02-26 Release date: 2022-07-20 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.65 Å) Cite: Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA, 119, 2022
7Z2D	Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with rilpivirine Descriptor: 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile, DNA (38-MER), Reverse transcriptase/ribonuclease H Authors: Singh, A.K, Das, K. Deposit date: 2022-02-26 Release date: 2022-07-20 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.38 Å) Cite: Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA, 119, 2022
7Z29	Cryo-EM structure of NNRTI resistant M184I/E138K mutant HIV-1 reverse transcriptase with a DNA aptamer in complex with nevirapine Descriptor: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, DNA (38-MER), Reverse transcriptase/ribonuclease H, ... Authors: Singh, A.K, Das, K. Deposit date: 2022-02-26 Release date: 2022-07-20 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.38 Å) Cite: Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA, 119, 2022
7Z2E	Cryo-EM structure of NNRTI resistant M184I/E138K mutant HIV-1 reverse transcriptase with a DNA aptamer in complex with rilpivirine Descriptor: 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile, DNA (38-MER), Reverse transcriptase/ribonuclease H, ... Authors: Singh, A.K, Das, K. Deposit date: 2022-02-26 Release date: 2022-07-20 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.45 Å) Cite: Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA, 119, 2022
9BAF	Solution NMR structure of conofurin-Delta Descriptor: Alpha-conotoxin LvIA Authors: Harvey, P.J, Craik, D.J, Hone, A.J, McIntosh, J.M. Deposit date: 2024-04-04 Release date: 2024-07-03 Last modified: 2024-10-16 Method: SOLUTION NMR Cite: Design, Synthesis, and Structure-Activity Relationships of Novel Peptide Derivatives of the Severe Acute Respiratory Syndrome-Coronavirus-2 Spike-Protein that Potently Inhibit Nicotinic Acetylcholine Receptors. J.Med.Chem., 67, 2024
6R91	Cryo-EM structure of NCP_THF2(-3)-UV-DDB Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ... Authors: Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H. Deposit date: 2019-04-02 Release date: 2019-06-12 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: DNA damage detection in nucleosomes involves DNA register shifting. Nature, 571, 2019
8VDJ	Crystal structure of SARS-CoV-2 3CL protease (3CLpro) as a covalent complex with EDP-235 Descriptor: 3C-like proteinase nsp5, 4,6,7-trifluoro-N-{(2S)-1-[(3R,5'R)-5'-(iminomethyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidin]-1'-yl]-4-methyl-1-oxopentan-2-yl}-N-methyl-1H-indole-2-carboxamide, THIOCYANATE ION Authors: Cade, I.A, Rhodin, M.H.J. Deposit date: 2023-12-15 Release date: 2024-08-14 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.002 Å) Cite: The small molecule inhibitor of SARS-CoV-2 3CLpro EDP-235 prevents viral replication and transmission in vivo. Nat Commun, 15, 2024
8VL3	Solution NMR structure of de novo designed protein F3 parent Descriptor: De novo designed protein F3 parent Authors: McShan, A.C, Simma, M.K. Deposit date: 2024-01-11 Release date: 2024-08-07 Method: SOLUTION NMR Cite: Solution NMR structure of de novo designed protein F3 parent To Be Published
1VYX	Solution structure of the KSHV K3 N-terminal domain Descriptor: ORF K3, ZINC ION Authors: Dodd, R.B, Allen, M.D, Brown, S.E, Sanderson, C.M, Duncan, L.M, lehner, P.J, Bycroft, M, Read, R.J. Deposit date: 2004-05-07 Release date: 2004-10-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution Structure of the Kaposi'S Sarcoma-Associated Herpesvirus K3 N-Terminal Domain Reveals a Novel E2-Binding C4Hc3-Type Ring Domain J.Biol.Chem., 279, 2004
7E42	Solution strucutre of holo acyl carrier protein from Acinetobacter baumannii Descriptor: Acyl carrier protein Authors: Choi, S, Park, J, Kim, Y. Deposit date: 2021-02-10 Release date: 2022-02-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: solution structure of holo acyl carrier protein in acinetobacter baumannii To Be Published
7XVR	Structure of neuraminidase from influenza B-like viruses derived from spiny eel Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neuraminidase Authors: Chai, Y, Gao, F. Deposit date: 2022-05-24 Release date: 2023-02-15 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and inhibitor sensitivity analysis of influenza B-like viral neuraminidases derived from Asiatic toad and spiny eel. Proc.Natl.Acad.Sci.USA, 119, 2022

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