PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3W3S	Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, PLATINUM (II) ION, SULFATE ION, ... Authors: Itoh, Y, Sekine, S, Yokoyama, S. Deposit date: 2012-12-27 Release date: 2013-02-13 Last modified: 2013-08-07 Method: X-RAY DIFFRACTION (3.095 Å) Cite: Tertiary structure of bacterial selenocysteine tRNA Nucleic Acids Res., 41, 2013
421D	5'-D(*TP*TP*CP*TP*TP*(BRO)CP*TP*TP*C)-3', 5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3' Descriptor: DNA (5'-D(*TP*TP*CP*TP*TP*(CBR)P*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3') Authors: Xiong, Y, Sundaralingam, M. Deposit date: 1998-08-16 Release date: 1999-01-05 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure and conformation of a DNA-RNA hybrid duplex with a polypurine RNA strand: d(TTCTTBr5CTTC)-r(GAAGAAGAA). Structure, 6, 1998
3AMU	Crystal structure of the TiaS-tRNA(Ile2)-AMPCPP-agmatine complex Descriptor: AGMATINE, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Putative uncharacterized protein, ... Authors: Numata, T, Osawa, T. Deposit date: 2010-08-23 Release date: 2011-10-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural basis of tRNA agmatinylation essential for AUA codon decoding Nat.Struct.Mol.Biol., 18, 2011
6TNA	CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT Descriptor: MAGNESIUM ION, TRNAPHE Authors: Sussman, J.L, Holbrook, S.R, Warrant, R.W, Church, G.M, Kim, S.-H. Deposit date: 1978-11-16 Release date: 1979-01-16 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement. J.Mol.Biol., 123, 1978
5XWY	Electron cryo-microscopy structure of LbuCas13a-crRNA binary complex Descriptor: A type VI-A CRISPR-Cas RNA-guided RNA ribonuclease, Cas13a, RNA (59-MER) Authors: Zhang, X, Wang, Y, Ma, J, Liu, L, Li, X, Li, Z, You, L, Wang, J, Wang, M. Deposit date: 2017-06-30 Release date: 2017-09-13 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: The Molecular Architecture for RNA-Guided RNA Cleavage by Cas13a. Cell, 170, 2017
1L1C	Structure of the LicT Bacterial Antiterminator Protein in Complex with its RNA Target Descriptor: Transcription antiterminator licT, licT mRNA antiterminator hairpin Authors: Yang, Y, Declerck, N, Manival, X, Aymerich, S, Kochoyan, M. Deposit date: 2002-02-15 Release date: 2002-03-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the LicT-RNA antitermination complex: CAT clamping RAT. EMBO J., 21, 2002
1D16	STRUCTURE OF A T4 HAIRPIN LOOP ON A Z-DNA STEM AND COMPARISON WITH A-RNA AND B-DNA LOOPS Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*GP*TP*TP*TP*TP*CP*GP*CP*GP*CP*G)-3') Authors: Chattopadhyaya, R, Grzeskowiak, K, Dickerson, R.E. Deposit date: 1988-04-12 Release date: 1989-01-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops. J.Mol.Biol., 211, 1990
3CDJ	Crystal structure of the E. coli KH/S1 domain truncated PNPase Descriptor: Polynucleotide phosphorylase Authors: Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S. Deposit date: 2008-02-27 Release date: 2008-12-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation. Rna, 14, 2008
1EXD	CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMINE TRNA APTAMER, GLUTAMINYL-TRNA SYNTHETASE, ... Authors: Bullock, T.L, Sherlin, L.D, Perona, J.J. Deposit date: 2000-05-02 Release date: 2000-05-15 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Tertiary core rearrangements in a tight binding transfer RNA aptamer. Nat.Struct.Biol., 7, 2000
4Q5S	Thermus thermophilus RNA polymerase initially transcribing complex containing 6-mer RNA Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3'), ... Authors: Murakami, K.S. Deposit date: 2014-04-17 Release date: 2014-07-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme. J.Biol.Chem., 289, 2014
4Q4Z	Thermus thermophilus RNA polymerase de novo transcription initiation complex Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ADENOSINE-5'-TRIPHOSPHATE, DNA (25-MER), ... Authors: Murakami, K.S. Deposit date: 2014-04-15 Release date: 2014-07-30 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme. J.Biol.Chem., 289, 2014
3CDI	Crystal structure of E. coli PNPase Descriptor: Polynucleotide phosphorylase Authors: Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S. Deposit date: 2008-02-27 Release date: 2008-12-09 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation. Rna, 14, 2008
6DTA	Bacteriophage N4 RNA polymerase II elongation complex 2 Descriptor: DNA (5'-D(P*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Molodtsov, V, Murakami, K.S. Deposit date: 2018-06-15 Release date: 2018-07-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.694 Å) Cite: Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
6DT8	Bacteriophage N4 RNA polymerase II elongation complex 1 Descriptor: DNA (5'-D(P*AP*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*UP*GP*G)-3'), RNAP1, ... Authors: Molodtsov, V, Murakami, K.S. Deposit date: 2018-06-15 Release date: 2018-07-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
8KAJ	Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(*CP*AP*AP*TP*AP*CP*CP*TP*TP*TP*TP*AP*TP*CP*CP*AP*TP*AP*AP*AP*TP*TP*CP*G)-3'), DNA (5'-D(*TP*TP*TP*AP*GP*GP*TP*AP*TP*TP*G)-3'), ... Authors: Chen, Y, Chen, J, Liu, L. Deposit date: 2023-08-03 Release date: 2024-06-05 Last modified: 2024-06-12 Method: X-RAY DIFFRACTION (3.42 Å) Cite: Trans-nuclease activity of Cas9 activated by DNA or RNA target binding. Nat.Biotechnol., 2024
8KAI	Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 17nt target DNA Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (25-MER), DNA (5'-D(*TP*TP*TP*AP*GP*GP*TP*AP*TP*TP*G)-3'), ... Authors: Chen, Y, Chen, J, Liu, L. Deposit date: 2023-08-03 Release date: 2024-06-05 Last modified: 2024-06-12 Method: X-RAY DIFFRACTION (3.49 Å) Cite: Trans-nuclease activity of Cas9 activated by DNA or RNA target binding. Nat.Biotechnol., 2024
8KAH	Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 18nt target DNA Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (26-MER), DNA (5'-D(*TP*TP*TP*AP*GP*GP*TP*AP*TP*TP*G)-3'), ... Authors: Chen, Y, Chen, J, Liu, L. Deposit date: 2023-08-03 Release date: 2024-06-05 Last modified: 2024-06-12 Method: X-RAY DIFFRACTION (3.36 Å) Cite: Trans-nuclease activity of Cas9 activated by DNA or RNA target binding. Nat.Biotechnol., 2024
5UX0	X-ray crystal structure of Marinitoga piezophila Argonaute in complex with 5' OH guide RNA and target DNA Descriptor: Argonaute protein, DNA (5'-D(P*AP*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*CP*C)-3'), RNA (5'-R(*G*GP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*AP*U)-3') Authors: Doxzen, K.W, Doudna, J.A. Deposit date: 2017-02-21 Release date: 2017-05-03 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.197 Å) Cite: DNA recognition by an RNA-guided bacterial Argonaute. PLoS ONE, 12, 2017
6DT7	Bacteriophage N4 RNA polymerase II and DNA complex Descriptor: DNA (5'-D(P*CP*CP*AP*CP*CP*TP*GP*CP*A)-3'), RNAP1, RNAP2 Authors: Molodtsov, V, Murakami, K.S. Deposit date: 2018-06-15 Release date: 2018-07-11 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
4K4U	Poliovirus polymerase elongation complex (r5_form) Descriptor: RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3'), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(P*GP*GP*GP*GP*GP*AP*GP*AP*UP*GP*A)-3'), ... Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
2JQ7	Model for thiostrepton binding to the ribosomal L11-RNA Descriptor: 50S RIBOSOMAL PROTEIN L11, RIBOSOMAL RNA, THIOSTREPTON Authors: Jonker, H.R.A, Ilin, S, Grimm, S.K, Woehnert, J, Schwalbe, H. Deposit date: 2007-05-30 Release date: 2007-07-03 Last modified: 2021-08-18 Method: SOLUTION NMR Cite: L11 Domain Rearrangement Upon Binding to RNA and Thiostrepton Studied by NMR Spectroscopy Nucleic Acids Res., 35, 2007
4XW1	Crystal structure of (GCCU(G-LNA)CCUG)2 duplex Descriptor: RNA (5'-R(*GP*CP*CP*UP*(LCG)P*CP*CP*UP*G)-3') Authors: Kiliszek, A, Banaszak, K, Rypniewski, W. Deposit date: 2015-01-28 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.302 Å) Cite: Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation. Rna, 22, 2016
4XW0	Crystal structure of (GCCU(G-LNA)CCUGC)2 duplex Descriptor: RNA (5'-R(*GP*CP*CP*UP*(LCG)P*CP*CP*UP*GP*C)-3'), SULFATE ION Authors: Kiliszek, A, Banaszak, K, Rypniewski, W. Deposit date: 2015-01-28 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation. Rna, 22, 2016
4K4W	Poliovirus polymerase elongation complex (r5+2_form) Descriptor: RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*CP*C)-3'), RNA (5'-R(P*GP*GP*GP*AP*GP*AP*UP*GP*AP*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3'), RNA-directed RNA polymerase 3D-POL Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
1ETG	REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, 19 STRUCTURES Descriptor: REV PEPTIDE, REV RESPONSIVE ELEMENT RNA Authors: Battiste, J.L, Mao, H, Rao, N.S, Tan, R, Muhandiram, D.R, Kay, L.E, Frankel, A.D, Willamson, J.R. Deposit date: 1996-08-28 Release date: 1997-03-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex. Science, 273, 1996

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