5KNB
 
 | | Crystal structure of the 2 ADP-bound V1 complex | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... | | Authors: | Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T. | | Deposit date: | 2016-06-28 | | Release date: | 2016-11-02 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (3.251 Å) | | Cite: | Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
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5KND
 | | Crystal structure of the Pi-bound V1 complex | | Descriptor: | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ... | | Authors: | Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T. | | Deposit date: | 2016-06-28 | | Release date: | 2016-11-02 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.888 Å) | | Cite: | Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
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6C6L
 | | Yeast Vacuolar ATPase Vo in lipid nanodisc | | Descriptor: | V-type proton ATPase subunit a, vacuolar isoform, V-type proton ATPase subunit c, ... | | Authors: | Roh, S, Stam, N.J, Hryc, C, Couoh-Cardel, S, Pintilie, G, Chiu, W, Wilkens, S. | | Deposit date: | 2018-01-19 | | Release date: | 2018-03-21 | | Last modified: | 2025-05-14 | | Method: | ELECTRON MICROSCOPY (3.5 Å) | | Cite: | The 3.5- angstrom CryoEM Structure of Nanodisc-Reconstituted Yeast Vacuolar ATPase VoProton Channel.
Mol. Cell, 69, 2018
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5Y60
 | | V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3. | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | | Authors: | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2017-08-10 | | Release date: | 2018-01-17 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (7.5 Å) | | Cite: | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus
Nat Commun, 9, 2018
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5Y5X
 | | V/A-type ATPase/synthase from Thermus thermophilus, rotational state 1 | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | | Authors: | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2017-08-10 | | Release date: | 2018-01-17 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (5 Å) | | Cite: | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus
Nat Commun, 9, 2018
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5Y5Z
 | | V/A-type ATPase/synthase from Thermus thermophilus, rotational state 2 | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | | Authors: | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2017-08-10 | | Release date: | 2018-01-17 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (6.7 Å) | | Cite: | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus
Nat Commun, 9, 2018
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5TSJ
 | | Thermus thermophilus V/A-ATPase bound to VH dAbs | | Descriptor: | Archaeal/vacuolar-type H+-ATPase subunit I, Human heavy chain domain antibody, V-type ATP synthase alpha chain, ... | | Authors: | Davies, R.B, Smits, C, Wong, A.S.W, Stock, D, Sandin, S, Stewart, A.G. | | Deposit date: | 2016-10-29 | | Release date: | 2017-02-01 | | Last modified: | 2024-03-13 | | Method: | ELECTRON MICROSCOPY (8.7 Å) | | Cite: | Cryo-EM analysis of a domain antibody bound rotary ATPase complex.
J. Struct. Biol., 197, 2017
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5Y5Y
 | | V/A-type ATPase/synthase from Thermus thermophilus, peripheral domain, rotational state 1 | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | | Authors: | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2017-08-10 | | Release date: | 2018-01-24 | | Last modified: | 2024-11-13 | | Method: | ELECTRON MICROSCOPY (4.7 Å) | | Cite: | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus
Nat Commun, 9, 2018
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8GXX
 | | 3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus. | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2022-09-21 | | Release date: | 2023-01-25 | | Last modified: | 2024-07-03 | | Method: | ELECTRON MICROSCOPY (3 Å) | | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8GXY
 | | 2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus. | | Descriptor: | SULFATE ION, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2022-09-21 | | Release date: | 2023-01-25 | | Last modified: | 2024-07-03 | | Method: | ELECTRON MICROSCOPY (2.8 Å) | | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8GXZ
 | | 1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus. | | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... | | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2022-09-21 | | Release date: | 2023-01-25 | | Last modified: | 2024-07-03 | | Method: | ELECTRON MICROSCOPY (3.1 Å) | | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8GXU
 | | 1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus | | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, SULFATE ION, V-type ATP synthase alpha chain, ... | | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2022-09-21 | | Release date: | 2023-01-25 | | Last modified: | 2024-07-03 | | Method: | ELECTRON MICROSCOPY (2.5 Å) | | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8GXW
 | | 2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus | | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... | | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2022-09-21 | | Release date: | 2023-01-25 | | Last modified: | 2024-07-03 | | Method: | ELECTRON MICROSCOPY (2.7 Å) | | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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9U6F
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes, state1 | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (2.2 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6Y
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3N | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (2.9 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6N
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under no pmf condition, state1W | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (2.85 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6P
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under no pmf condition, state1N | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (2.85 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6O
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under no pmf condition, state1M | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (2.8 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6T
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state1W | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (2.9 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6U
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state1M | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (2.9 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6V
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state1N | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (3 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6X
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3M | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (3 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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9U6W
 | | Cryo-EM structure of the V1 domain of V/A-ATPase in liposomes under pmf condition, state3W | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Nakano, A, Kishikawa, J, Nishida, Y, Shigematsu, H, Gerle, C, Mitsuoka, M, Yokoyama, K. | | Deposit date: | 2025-03-23 | | Release date: | 2025-10-29 | | Method: | ELECTRON MICROSCOPY (3.1 Å) | | Cite: | Structures of rotary ATP synthase from Thermus thermophilus during proton powered ATP synthesis.
Sci Adv, 11, 2025
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1HO8
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7VAX
 | | V1EG of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state1-2 | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... | | Authors: | Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. | | Deposit date: | 2021-08-30 | | Release date: | 2022-07-13 | | Last modified: | 2024-06-19 | | Method: | ELECTRON MICROSCOPY (2.9 Å) | | Cite: | Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases.
Nat Commun, 13, 2022
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