PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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5QS3	PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z198195770 Descriptor: CADMIUM ION, N-[3-(carbamoylamino)phenyl]acetamide, T-box transcription factor T Authors: Newman, J.A, Gavard, A.E, Fernandez-Cid, A, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2019-05-25 Release date: 2019-07-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.71 Å) Cite: PanDDA analysis group deposition To Be Published
5QRP	PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z2442270563 Descriptor: 4-[(3-cyclopropyl-1,2,4-oxadiazol-5-yl)methyl]piperidine, CADMIUM ION, T-box transcription factor T Authors: Newman, J.A, Gavard, A.E, Fernandez-Cid, A, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2019-05-25 Release date: 2019-07-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.67 Å) Cite: PanDDA analysis group deposition To Be Published
5QRU	PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z235341991 Descriptor: CADMIUM ION, N-(2-methoxy-5-methylphenyl)glycinamide, T-box transcription factor T Authors: Newman, J.A, Gavard, A.E, Fernandez-Cid, A, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2019-05-25 Release date: 2019-07-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.76 Å) Cite: PanDDA analysis group deposition To Be Published
5QRZ	PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z1998104358 Descriptor: (5R)-N,N-dimethyl-2,9-dioxa-6-azaspiro[4.5]decane-6-carboxamide, CADMIUM ION, T-box transcription factor T Authors: Newman, J.A, Gavard, A.E, Fernandez-Cid, A, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2019-05-25 Release date: 2019-07-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.96 Å) Cite: PanDDA analysis group deposition To Be Published
5QS4	PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z30820160 Descriptor: CADMIUM ION, N-(4-methyl-1,3-thiazol-2-yl)propanamide, T-box transcription factor T Authors: Newman, J.A, Gavard, A.E, Fernandez-Cid, A, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2019-05-25 Release date: 2019-07-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.65 Å) Cite: PanDDA analysis group deposition To Be Published
5QRQ	PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z645232558 Descriptor: CADMIUM ION, T-box transcription factor T, [1-(pyrimidin-2-yl)piperidin-4-yl]methanol Authors: Newman, J.A, Gavard, A.E, Fernandez-Cid, A, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2019-05-25 Release date: 2019-07-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: PanDDA analysis group deposition To Be Published
5QRV	PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z198194396 Descriptor: 4-(furan-2-carbonyl)piperazine-1-carboxamide, CADMIUM ION, T-box transcription factor T Authors: Newman, J.A, Gavard, A.E, Fernandez-Cid, A, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2019-05-25 Release date: 2019-07-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.67 Å) Cite: PanDDA analysis group deposition To Be Published
5QS0	PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z274555794 Descriptor: CADMIUM ION, N-(3-acetylphenyl)morpholine-4-carboxamide, T-box transcription factor T Authors: Newman, J.A, Gavard, A.E, Fernandez-Cid, A, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2019-05-25 Release date: 2019-07-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: PanDDA analysis group deposition To Be Published
4NYD	Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine Descriptor: HYPOXANTHINE, MAGNESIUM ION, MANGANESE (II) ION, ... Authors: Warner, K.D, Homan, P, Weeks, K.M, Smith, A.G, Abell, C, Ferre-D'Amare, A.R. Deposit date: 2013-12-10 Release date: 2014-06-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Validating Fragment-Based Drug Discovery for Biological RNAs: Lead Fragments Bind and Remodel the TPP Riboswitch Specifically. Chem.Biol., 21, 2014
4NYA	Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine Descriptor: 5-(azidomethyl)-2-methylpyrimidin-4-amine, MAGNESIUM ION, thiM TPP riboswitch Authors: Warner, K.D, Homan, P, Weeks, K.M, Smith, A.G, Abell, C, Ferre-D'Amare, A.R. Deposit date: 2013-12-10 Release date: 2014-06-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Validating Fragment-Based Drug Discovery for Biological RNAs: Lead Fragments Bind and Remodel the TPP Riboswitch Specifically. Chem.Biol., 21, 2014
8QBM	Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments) Descriptor: MAGNESIUM ION, Retron Ec86 putative ribosyltransferase/DNA-binding protein, Retron Ec86 reverse transcriptase, ... Authors: Carabias del Rey, A, Montoya, G. Deposit date: 2023-08-24 Release date: 2024-06-05 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: Retron-Eco1 assembles NAD + -hydrolyzing filaments that provide immunity against bacteriophages. Mol.Cell, 84, 2024
410D	DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-ETHOXYMETHYLENE RIBONUCLEOSIDE Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(T38)P*AP*CP*GP*C)-3'), SPERMINE Authors: Tereshko, V, Portmann, S, Tay, E.C, Martin, P, Natt, F, Altmann, K.H, Egli, M. Deposit date: 1998-06-30 Release date: 1998-07-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Correlating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues. Biochemistry, 37, 1998
412D	DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHYL-[TRI(OXYETHYL)] RIBONUCLEOSIDE Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3'), MAGNESIUM ION Authors: Tereshko, V, Portmann, S, Tay, E.C, Martin, P, Natt, F, Altmann, K.H, Egli, M. Deposit date: 1998-06-30 Release date: 1998-07-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Correlating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues. Biochemistry, 37, 1998
5VXQ	X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5 Descriptor: AMMONIUM ION, DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3') Authors: Xie, J, Chen, Y, Wei, X, Kozlov, G, Gehring, K. Deposit date: 2017-05-23 Release date: 2017-08-16 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.002 Å) Cite: Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA. Nucleic Acids Res., 45, 2017
3BO3	A relaxed active site following exon ligation by a group I intron Descriptor: Group I intron P9, MAGNESIUM ION, POTASSIUM ION, ... Authors: Lipchock, S.V, Strobel, S.A. Deposit date: 2007-12-17 Release date: 2008-04-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.4 Å) Cite: A relaxed active site after exon ligation by the group I intron Proc.Natl.Acad.Sci.Usa, 105, 2008
3BO4	A relaxed active site following exon ligation by a group I intron Descriptor: DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*A)-D(P*DG)-3'), DNA/RNA (5'-R(*CP*A)-D(P*DU)-R(P*AP*CP*GP*GP*CP*C)-3'), Group I intron P9, ... Authors: Lipchock, S.V, Strobel, S.A. Deposit date: 2007-12-17 Release date: 2008-04-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.33 Å) Cite: A relaxed active site after exon ligation by the group I intron Proc.Natl.Acad.Sci.Usa, 105, 2008
1TQ9	Non-covalent swapped dimer of Bovine Seminal Ribonuclease in complex with 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE Descriptor: 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE, Ribonuclease, seminal Authors: Sica, F, Di Fiore, A, Merlino, A, Mazzarella, L. Deposit date: 2004-06-17 Release date: 2004-09-14 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and Stability of the Non-covalent Swapped Dimer of Bovine Seminal Ribonuclease: AN ENZYME TAILORED TO EVADE RIBONUCLEASE PROTEIN INHIBITOR J.Biol.Chem., 279, 2004
3H8A	Crystal structure of E. coli enolase bound to its cognate RNase E recognition domain Descriptor: Enolase, MAGNESIUM ION, RNase E Authors: Nurmohamed, S, Luisi, B.F. Deposit date: 2009-04-29 Release date: 2010-04-14 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Molecular recognition between Escherichia coli enolase and ribonuclease E. Acta Crystallogr.,Sect.D, 66, 2010
6A4D	pNP-TMP bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: 5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine, Oligoribonuclease Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4A	Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: MAGNESIUM ION, Oligoribonuclease Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
2Z0A	Crystal structure of RNA-binding domain of NS1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1) Descriptor: GLYCINE, Nonstructural protein 1, SUCCINIC ACID Authors: Saijo, S, Kishishita, S, Kamo-Uchikubo, T, Terada, T, Shirouzu, M, Ito, H, Ito, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-05-07 Release date: 2008-05-13 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of RNA-binding domain of NS1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1) To be Published
1MVB	STRUCTURE OF A PROTEIN CAPSID OF THE T59S MUTANT OF PHAGE MS2 Descriptor: BACTERIOPHAGE MS2 CAPSID Authors: Vandenworm, S, Valegard, K, Stonehouse, N.J, Liljas, L. Deposit date: 1997-08-06 Release date: 1997-12-24 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structures of MS2 coat protein mutants in complex with wild-type RNA operator fragments. Nucleic Acids Res., 26, 1998
1MVA	STRUCTURE OF A PROTEIN CAPSID OF THE T45A MUTANT OF PHAGE MS2 Descriptor: BACTERIOPHAGE MS2 CAPSID Authors: Vandenworm, S, Valegard, K, Stonehouse, N.J, Liljas, L. Deposit date: 1997-08-06 Release date: 1997-12-24 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structures of MS2 coat protein mutants in complex with wild-type RNA operator fragments. Nucleic Acids Res., 26, 1998
2WNR	The structure of Methanothermobacter thermautotrophicus exosome core assembly Descriptor: PHOSPHATE ION, PROBABLE EXOSOME COMPLEX EXONUCLEASE 1, PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 Authors: Ng, C.L, Waterman, D.G, Antson, A.A, Ortiz-Lombardia, M. Deposit date: 2009-07-19 Release date: 2010-04-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structure of the Methanothermobacter Thermautotrophicus Exosome Rnase Ph Ring Acta Crystallogr.,Sect.D, 66, 2010
2BF0	crystal structure of the rpr of pcf11 Descriptor: CALCIUM ION, PCF11 Authors: Noble, C.G, Hollingworth, D, Martin, S.R, Adeniran, V.E, Smerdon, S.J, Kelly, G, Taylor, I.A, Ramos, A. Deposit date: 2004-12-02 Release date: 2005-01-18 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Key Features of the Interaction between Pcf11 Cid and RNA Polymerase II Ctd. Nat.Struct.Mol.Biol., 12, 2005

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