PDB: 72960 resultsInfo pagesStatus searchChemie searchBIRD

---

5UHE	Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-AAP1 Descriptor: DNA (5'-D(*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*AP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Lin, W, Das, K, Feng, Y, Ebright, R.H. Deposit date: 2017-01-11 Release date: 2017-04-12 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (4.039 Å) Cite: Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition. Mol. Cell, 66, 2017
2K3F	Ribosomal protein L11 from Thermotoga maritima Descriptor: 50S ribosomal protein L11 Authors: Jonker, H.R.A, Ilin, S, Schwalbe, H, Woehnert, J. Deposit date: 2008-05-06 Release date: 2008-06-17 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Domain reorientation and induced fit upon RNA binding: solution structure and dynamics of ribosomal protein L11 from Thermotoga maritima ChemBioChem, 6, 2005
4E8U	Crystal structure of Arabidopsis IDN2 XS domain along with a small segment of adjacent coiled-coil region Descriptor: Putative uncharacterized protein T8P19.180, SULFATE ION Authors: Simanshu, D.K, Patel, D.J. Deposit date: 2012-03-20 Release date: 2012-06-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.701 Å) Cite: INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc.Natl.Acad.Sci.USA, 109, 2012
4CYI	Chaetomium thermophilum Pan3 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, ... Authors: Wolf, J, Valkov, E, Allen, M.D, Meineke, B, Gordiyenko, Y, McLaughlin, S.H, Olsen, T.M, Robinson, C.V, Bycroft, M, Stewart, M, Passmore, L.A. Deposit date: 2014-04-11 Release date: 2014-06-11 Last modified: 2018-04-25 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Structural Basis for Pan3 Binding to Pan2 and its Function in Mrna Recruitment and Deadenylation Embo J., 33, 2014
8VA2	Symmetry expanded map of 2 gamma-tubulins bound to 2 alpha tubulins in gamma tubulin ring complex capped microtubule end. Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Aher, A, Urnavicius, L, Kapoor, T.M. Deposit date: 2023-12-10 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Symmetry expanded map of 2 gamma-tubulins bound to 2 alpha tubulins. To Be Published
3I4U	Crystal Structure Analysis of a helicase associated domain Descriptor: ATP-dependent RNA helicase DHX8, BROMIDE ION, GLYCEROL Authors: Kudlinzki, D, Ficner, R. Deposit date: 2009-07-02 Release date: 2010-07-07 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural analysis of the C-terminal domain of the spliceosomal helicase Prp22 Biol.Chem., 393, 2012
6UFK	Pistol ribozyme product crystal soaked in Mn2+ Descriptor: MANGANESE (II) ION, RNA (5'-R(*UP*CP*CP*AP*G)-3'), RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(23G))-3'), ... Authors: Teplova, M, Falschlunger, C, Krasheninina, O, Patel, D.J, Micura, R. Deposit date: 2019-09-24 Release date: 2019-12-18 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crucial Roles of Two Hydrated Mg2+Ions in Reaction Catalysis of the Pistol Ribozyme. Angew.Chem.Int.Ed.Engl., 59, 2020
1NTT	5'(dCPCPUPCPCPUPUP)3':(rAGGAGGAAA)5', where P=propynyl Descriptor: 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' Authors: Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. Deposit date: 2003-01-30 Release date: 2003-06-10 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines J.Am.Chem.Soc., 125, 2003
1GSP	RIBONUCLEASE T1 COMPLEXED WITH 2',3'-CGPS, 1 DAY Descriptor: CALCIUM ION, GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE, RIBONUCLEASE T1 Authors: Zegers, I, Wyns, L. Deposit date: 1997-11-28 Release date: 1998-02-25 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Hydrolysis of a slow cyclic thiophosphate substrate of RNase T1 analyzed by time-resolved crystallography. Nat.Struct.Biol., 5, 1998
5UHB	Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with Rifampin Descriptor: DNA (5'-D(*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Lin, W, Das, K, Feng, Y, Ebright, R.H. Deposit date: 2017-01-11 Release date: 2017-04-12 Last modified: 2017-11-22 Method: X-RAY DIFFRACTION (4.29 Å) Cite: Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition. Mol. Cell, 66, 2017
3RF2	Crystal Structure of 30S Ribosomal Protein S8 from Aquifex Aeolicus Descriptor: 30S ribosomal protein S8, SULFATE ION Authors: Menichelli, E, Williamson, J.R. Deposit date: 2011-04-05 Release date: 2011-11-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.16 Å) Cite: The Structure of Aquifex aeolicus Ribosomal Protein S8 Reveals a Unique Subdomain that Contributes to an Extremely Tight Association with 16S rRNA. J.Mol.Biol., 415, 2012
6AM0	Crystal structure of K. lactis Edc1-Dcp1-Dcp2-Edc3 decapping complex with synthetic cap substrate analog Descriptor: KLLA0A01474p, KLLA0A11308p, KLLA0E01827p, ... Authors: Mugridge, J.S, Gross, J.D. Deposit date: 2017-08-08 Release date: 2018-03-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.84 Å) Cite: Structure of the activated Edc1-Dcp1-Dcp2-Edc3 mRNA decapping complex with substrate analog poised for catalysis. Nat Commun, 9, 2018
5VSW	X-ray crystal structure of Escherichia coli RNA polymerase and DksA/ppGpp complex Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Murakami, K.S, Molodtsov, V. Deposit date: 2017-05-12 Release date: 2017-06-14 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (4.295 Å) Cite: Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA. Mol. Cell, 69, 2018
6AR5	Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (Duplex Only) Descriptor: DNA, RNA Authors: Stamos, J.L, Lentzsch, A.M, Lambowitz, A.M. Deposit date: 2017-08-21 Release date: 2017-11-29 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.413 Å) Cite: Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications. Mol. Cell, 68, 2017
3RTJ	Crystal structure of ricin bound with dinucleotide ApG Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, RNA (5'-R(*AP*G)-3'), Ricin A chain, ... Authors: Monzingo, A.F, Robertus, J.D. Deposit date: 2011-05-03 Release date: 2011-08-31 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (3 Å) Cite: X-ray analysis of substrate analogs in the ricin A-chain active site. J.Mol.Biol., 227, 1992
1QCG	LOW TEMPERATURE STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN Descriptor: POKEWEED ANTIVIRAL PROTEIN Authors: Kurinov, I.V, Myers, D.E, Irvin, J.D, Uckun, F.M. Deposit date: 1999-05-04 Release date: 1999-09-15 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: X-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs. Protein Sci., 8, 1999
4CYJ	Chaetomium thermophilum Pan2:Pan3 complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, ... Authors: Wolf, J, Valkov, E, Allen, M.D, Meineke, B, Gordiyenko, Y, McLaughlin, S.H, Olsen, T.M, Robinson, C.V, Bycroft, M, Stewart, M, Passmore, L.A. Deposit date: 2014-04-11 Release date: 2014-06-11 Last modified: 2014-07-30 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Structural Basis for Pan3 Binding to Pan2 and its Function in Mrna Recruitment and Deadenylation Embo J., 33, 2014
1P9Q	Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus Descriptor: Hypothetical protein AF0491 Authors: Savchenko, A, Evdokimova, E, Skarina, T, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A. Deposit date: 2003-05-12 Release date: 2004-06-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism. J.Biol.Chem., 280, 2005
5W1S	X-ray crystal structure of Escherichia coli RNA polymerase and TraR complex Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Murakami, K.S, Molodtsov, V. Deposit date: 2017-06-04 Release date: 2017-06-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.805 Å) Cite: Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA. Mol. Cell, 69, 2018
1QCI	LOW TEMPERATURE STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN COMPLEXED WITH ADENINE Descriptor: ADENINE, POKEWEED ANTIVIRAL PROTEIN Authors: Kurinov, I.V, Myers, D.E, Irvin, J.D, Uckun, F.M. Deposit date: 1999-05-05 Release date: 1999-09-15 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: X-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs. Protein Sci., 8, 1999
1OYV	Crystal structure of tomato inhibitor-II in a ternary complex with subtilisin Carlsberg Descriptor: CALCIUM ION, Subtilisin Carlsberg, Wound-induced proteinase inhibitor-II Authors: Barrette-Ng, I.H, Ng, K.K, Cherney, M.M, Pearce, G, Ryan, C.A, James, M.N. Deposit date: 2003-04-07 Release date: 2003-07-15 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis of inhibition revealed by a 1:2 complex of the two-headed tomato inhibitor-II and subtilisin Carlsberg J.Biol.Chem., 278, 2003
1QCJ	LOW TEMPERATURE COMPLEX OF POKEWEED ANTIVIRAL PROTEIN WITH PTEORIC ACID Descriptor: 2-AMINO-6-[(4-CARBOXY-PHENYLAMINO)-METHYL]-4-HYDROXY-PTERIDIN-1-IUM, POKEWEED ANTIVIRAL PROTEIN Authors: Kurinov, I.V, Myers, D.E, Irvin, J.D, Uckun, F.M. Deposit date: 1999-05-05 Release date: 1999-09-15 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: X-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs. Protein Sci., 8, 1999
1MRF	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES Descriptor: 2'-DEOXYINOSINE-5'-MONOPHOSPHATE, IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), ... Authors: Pokkuluri, P.R, Cygler, M. Deposit date: 1994-06-13 Release date: 1995-02-14 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
6IB7	Structure of wild type SuhB Descriptor: GLYCEROL, Inositol-1-monophosphatase, MAGNESIUM ION Authors: Huang, Y.H, Loll, B, Wahl, M.C. Deposit date: 2018-11-29 Release date: 2019-04-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.245 Å) Cite: Structural basis for the function of SuhB as a transcription factor in ribosomal RNA synthesis. Nucleic Acids Res., 47, 2019
2FMR	KH1 FROM THE FRAGILE X PROTEIN FMR1, NMR, 18 STRUCTURES Descriptor: FMR1 PROTEIN Authors: Musco, G, Kharrat, A, Stier, G, Fraternali, F, Gibson, T.J, Nilges, M, Pastore, A. Deposit date: 1997-10-06 Release date: 1998-04-08 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: The solution structure of the first KH domain of FMR1, the protein responsible for the fragile X syndrome. Nat.Struct.Biol., 4, 1997

<588589590591592593594595596597598599600601602603>