PDB: 52540 resultsInfo pagesStatus searchChemie searchBIRD

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1WC5	Soluble adenylyl cyclase CyaC from S. platensis in complex with alpha, beta-methylene-ATP in presence of bicarbonate Descriptor: ADENYLATE CYCLASE, CALCIUM ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ... Authors: Steegborn, C, Litvin, T.N, Levin, L.R, Buck, J, Wu, H. Deposit date: 2004-11-08 Release date: 2004-12-20 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Bicarbonate Activation of Adenylyl Cyclase Via Promotion of Catalytic Active Site Closure and Metal Recruitment Nat.Struct.Mol.Biol., 12, 2005
1JJZ	REFINED STRUCTURE AND DISULFIDE PAIRING OF THE KALATA B1 PEPTIDE Descriptor: Kalata-B4 Authors: Skjeldal, L, Gran, L, Sletten, K, Volkman, B.F. Deposit date: 2001-07-10 Release date: 2002-06-12 Last modified: 2020-08-12 Method: SOLUTION NMR Cite: Refined structure and metal binding site of the kalata B1 peptide. Arch.Biochem.Biophys., 399, 2002
4Q85	YcaO with Non-hydrolyzable ATP (AMPCPP) Bound Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Ribosomal protein S12 methylthiotransferase accessory factor YcaO Authors: Chekan, J.R, Nair, S.K. Deposit date: 2014-04-25 Release date: 2014-08-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.29 Å) Cite: Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis. Nat.Chem.Biol., 10, 2014
1WC6	Soluble adenylyl cyclase CyaC from S. platensis in complex with Rp- ATPalphaS in presence of bicarbonate Descriptor: ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, ADENYLATE CYCLASE, MAGNESIUM ION Authors: Steegborn, C, Litvin, T.N, Levin, L.R, Buck, J, Wu, H. Deposit date: 2004-11-08 Release date: 2004-12-20 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Bicarbonate Activation of Adenylyl Cyclase Via Promotion of Catalytic Active Site Closure and Metal Recruitment Nat.Struct.Mol.Biol., 12, 2005
5XXW	GDP-microtubule complexed with KIF5C in ATP state Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Morikawa, M, Shigematsu, H, Nitta, R, Hirokawa, N. Deposit date: 2017-07-05 Release date: 2018-10-10 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (6 Å) Cite: Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport J. Cell Biol., 217, 2018
1WC1	Soluble adenylyl cyclase CyaC from S. platensis in complex with Rp- ATPalphaS Descriptor: ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, ADENYLATE CYCLASE, MAGNESIUM ION Authors: Steegborn, C, Litvin, T.N, Levin, L.R, Buck, J, Wu, H. Deposit date: 2004-11-06 Release date: 2004-12-20 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Bicarbonate Activation of Adenylyl Cyclase Via Promotion of Catalytic Active Site Closure and Metal Recruitment Nat.Struct.Mol.Biol., 12, 2005
4Q3L	Crystal structure of MGS-M2, an alpha/beta hydrolase enzyme from a Medee basin deep-sea metagenome library Descriptor: GLYCEROL, MGS-M2 Authors: Stogios, P.J, Xu, X, Cui, H, Alcaide, M, Ferrer, M, Savchenko, A. Deposit date: 2014-04-11 Release date: 2015-02-25 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats. Environ Microbiol, 17, 2015
5Y0Q	Crystal structure of BsTmcAL bound with AMPCPP Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650 Authors: Yamashita, S, Tomita, K. Deposit date: 2017-07-18 Release date: 2018-07-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018
3R1R	RIBONUCLEOTIDE REDUCTASE R1 PROTEIN WITH AMPPNP OCCUPYING THE ACTIVITY SITE FROM ESCHERICHIA COLI Descriptor: ADENOSINE-5'-TRIPHOSPHATE, RIBONUCLEOTIDE REDUCTASE R1 PROTEIN, RIBONUCLEOTIDE REDUCTASE R2 PROTEIN Authors: Eriksson, M, Eklund, H. Deposit date: 1997-07-21 Release date: 1998-01-28 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Binding of allosteric effectors to ribonucleotide reductase protein R1: reduction of active-site cysteines promotes substrate binding. Structure, 5, 1997
4Q96	CID of human RPRD1B in complex with an unmodified CTD peptide Descriptor: RPB1-CTD, Regulation of nuclear pre-mRNA domain-containing protein 1B, SULFATE ION, ... Authors: Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Guo, X, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC) Deposit date: 2014-04-29 Release date: 2014-06-04 Last modified: 2014-08-20 Method: X-RAY DIFFRACTION (1.85 Å) Cite: RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol., 21, 2014
5J0M	Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat Descriptor: Apical region (29-mer) of the HIV-1 TAR RNA element, Cyclic peptide mimetic of HIV-1 Tat Authors: Borkar, A.N, Bardaro Jr, M.F, Varani, G, Vendruscolo, M. Deposit date: 2016-03-28 Release date: 2016-06-08 Last modified: 2019-10-23 Method: SOLUTION NMR Cite: Structure of a low-population binding intermediate in protein-RNA recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
4I5S	Structure and function of sensor histidine kinase Descriptor: Putative histidine kinase CovS; VicK-like protein Authors: Cai, Y. Deposit date: 2012-11-28 Release date: 2013-03-27 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Mechanistic insights revealed by the crystal structure of a histidine kinase with signal transducer and sensor domains Plos Biol., 11, 2013
5ERA	Human Connexin-26 (Calcium-free) Descriptor: Gap junction beta-2 protein Authors: Purdy, M.D, Bennett, B.C, Baker, K.A, Yeager, M.J. Deposit date: 2015-11-13 Release date: 2016-01-27 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.8 Å) Cite: An electrostatic mechanism for Ca(2+)-mediated regulation of gap junction channels. Nat Commun, 7, 2016
5UGK	Zinc-Binding Structure of a Catalytic Amyloid from Solid-State NMR Spectroscopy Descriptor: ILE-HIS-VAL-HIS-LEU-GLN-ILE, ZINC ION Authors: Lee, M, Wang, T, Makhlynets, O.V, Wu, Y, Polizzi, N, Wu, H, Gosavi, P.M, Korendovych, I.V, DeGrado, W.F, Hong, M. Deposit date: 2017-01-09 Release date: 2017-05-31 Last modified: 2024-05-15 Method: SOLID-STATE NMR Cite: Zinc-binding structure of a catalytic amyloid from solid-state NMR. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5J1O	Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat Descriptor: Apical region (29mer) of the HIV-1 TAR element, Cyclic peptide mimetic of Tat Authors: Borkar, A.N, Bardaro, M.F, Varani, G, Vendruscolo, M. Deposit date: 2016-03-29 Release date: 2016-06-08 Last modified: 2019-10-23 Method: SOLUTION NMR Cite: Structure of a low-population binding intermediate in protein-RNA recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
3M6N	Crystal structure of RpfF Descriptor: RpfF protein Authors: Lim, S.C, Cheng, Z, Qamra, R, Song, H. Deposit date: 2010-03-16 Release date: 2010-09-22 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis of the Sensor-Synthase Interaction in Autoinduction of the Quorum Sensing Signal DSF Biosynthesis Structure, 18, 2010
5F2V	Crystal structure of the small alarmone synthethase 1 from Bacillus subtilis bound to AMPCPP Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, GTP pyrophosphokinase YjbM, MAGNESIUM ION Authors: Steinchen, W, Schuhmacher, J.S, Altegoer, F, Bange, G. Deposit date: 2015-12-02 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Catalytic mechanism and allosteric regulation of an oligomeric (p)ppGpp synthetase by an alarmone. Proc.Natl.Acad.Sci.USA, 112, 2015
3WQT	Staphylococcus aureus FtsA complexed with AMPPNP Descriptor: CHLORIDE ION, Cell division protein FtsA, MAGNESIUM ION, ... Authors: Fujita, J, Maeda, Y, Miyazaki, Y, Inoue, T, Matsumura, H. Deposit date: 2014-02-01 Release date: 2014-10-08 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of FtsA from Staphylococcus aureus FEBS Lett., 588, 2014
5F49	Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic sample in complex with malonyl-coenzyme A Descriptor: COENZYME A, MAGNESIUM ION, MALONYL-COENZYME A, ... Authors: Xu, Z, Skarina, T, Stogios, P.J, Yim, V, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2015-12-03 Release date: 2015-12-16 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural and Functional Survey of Environmental Aminoglycoside Acetyltransferases Reveals Functionality of Resistance Enzymes. ACS Infect Dis, 3, 2017
4Q3O	Crystal structure of MGS-MT1, an alpha/beta hydrolase enzyme from a Lake Matapan deep-sea metagenome library Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, GLYCEROL, ... Authors: Stogios, P.J, Xu, X, Cui, H, Alcaide, M, Ferrer, M, Savchenko, A. Deposit date: 2014-04-11 Release date: 2015-03-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats. Environ Microbiol, 17, 2015
4Q3N	Crystal structure of MGS-M5, a lactate dehydrogenase enzyme from a Medee basin deep-sea metagenome library Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CHLORIDE ION, ... Authors: Stogios, P.J, Xu, X, Cui, H, Alcaide, M, Ferrer, M, Savchenko, A. Deposit date: 2014-04-11 Release date: 2015-02-25 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats. Environ Microbiol, 17, 2015
1XU0	Solution structure of Xenopus leavis prion protein Descriptor: prion protein Authors: Perez, D.R, Wuthrich, K. Deposit date: 2004-10-25 Release date: 2005-01-04 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Prion protein NMR structures of chicken, turtle, and frog PROC.NATL.ACAD.SCI.USA, 102, 2005
3AAQ	Crystal structure of Lp1NTPDase from Legionella pneumophila in complex with the inhibitor ARL 67156 Descriptor: 5'-O-[(R)-{[(R)-[dibromo(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-N,N-diethyladenosine, Ectonucleoside triphosphate diphosphohydrolase I Authors: Vivian, J.P, Beddoe, T, Rossjohn, J. Deposit date: 2009-11-24 Release date: 2010-02-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structure of a Legionella pneumophila Ecto -Triphosphate Diphosphohydrolase, A Structural and Functional Homolog of the Eukaryotic NTPDases Structure, 18, 2010
8UC1	Cryo-EM structure of dolphin Prestin in low Cl buffer Descriptor: CHLORIDE ION, Prestin Authors: Haller, P, Bavi, N, Perozo, E. Deposit date: 2023-09-25 Release date: 2023-12-13 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Folding of prestin's anion-binding site and the mechanism of outer hair cell electromotility. Elife, 12, 2023
5F9L	CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dAMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N2-ETHENODEOXYGUANOSINE LESION Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(GNE)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2015-12-09 Release date: 2016-12-21 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.592 Å) Cite: Bypass of the 1, N2-Ethenodeoxyguanosine Lesion by Human DNA Polymerase Eta To Be Published

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