8RSO
 
 | | Crystal structure of marine actinobacteria clade rhodopsin (MAR) in the ground state | | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ... | | Authors: | Bukhdruker, S, Kovalev, K, Astashkin, R, Gordeliy, V. | | Deposit date: | 2024-01-25 | | Release date: | 2025-04-02 | | Last modified: | 2025-07-02 | | Method: | X-RAY DIFFRACTION (1.25 Å) | | Cite: | Proteorhodopsin insights into the molecular mechanism of vectorial proton transport.
Sci Adv, 11, 2025
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6TK5
 | | Femtosecond to millisecond structural changes in a light-driven sodium pump: 800fs+2ps structure of KR2 with extrapolated, light and dark datasets | | Descriptor: | EICOSANE, RETINAL, Sodium pumping rhodopsin | | Authors: | Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J. | | Deposit date: | 2019-11-28 | | Release date: | 2020-05-27 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | Femtosecond-to-millisecond structural changes in a light-driven sodium pump.
Nature, 583, 2020
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6TK7
 | | Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in acidic conditions | | Descriptor: | EICOSANE, RETINAL, Sodium pumping rhodopsin | | Authors: | Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J. | | Deposit date: | 2019-11-28 | | Release date: | 2020-05-27 | | Last modified: | 2024-10-09 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Femtosecond-to-millisecond structural changes in a light-driven sodium pump.
Nature, 583, 2020
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2EI4
 | | Trimeric complex of archaerhodopsin-2 | | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Archaerhodopsin-2, BACTERIORUBERIN, ... | | Authors: | Kouyama, T. | | Deposit date: | 2007-03-11 | | Release date: | 2008-01-01 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2
J.Mol.Biol., 375, 2008
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7Q35
 | | Crystal structure of the mutant bacteriorhodopsin pressurized with krypton | | Descriptor: | Bacteriorhodopsin, EICOSANE, HEXANE, ... | | Authors: | Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. | | Deposit date: | 2021-10-27 | | Release date: | 2022-04-27 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action.
Commun Biol, 5, 2022
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7Q38
 | | Crystal structure of the mutant bacteriorhodopsin pressurized with argon | | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ARGON, Bacteriorhodopsin, ... | | Authors: | Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. | | Deposit date: | 2021-10-27 | | Release date: | 2022-04-27 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action.
Commun Biol, 5, 2022
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7Q37
 | | Crystal structure of proton pump MAR rhodopsin pressurized with krypton | | Descriptor: | Bacteriorhodopsin, EICOSANE, HEXANE, ... | | Authors: | Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. | | Deposit date: | 2021-10-27 | | Release date: | 2022-04-27 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action.
Commun Biol, 5, 2022
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7Q36
 | | Crystal structure of KR2 sodium pump rhodopsin pressurized with krypton | | Descriptor: | EICOSANE, HEXANE, KRYPTON, ... | | Authors: | Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. | | Deposit date: | 2021-10-27 | | Release date: | 2022-04-27 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action.
Commun Biol, 5, 2022
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2JAF
 | | Ground state of halorhodopsin T203V | | Descriptor: | CHLORIDE ION, Halorhodopsin, PALMITIC ACID, ... | | Authors: | Gmelin, W, Zeth, K, Efremov, R, Heberle, J, Tittor, J, Oesterhelt, D. | | Deposit date: | 2006-11-28 | | Release date: | 2006-12-14 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | The crystal structure of the L1 intermediate of halorhodopsin at 1.9 angstroms resolution.
Photochem. Photobiol., 83, 2007
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2JAG
 | | L1-intermediate of halorhodopsin T203V | | Descriptor: | CHLORIDE ION, Halorhodopsin, PALMITIC ACID, ... | | Authors: | Gmelin, W, Zeth, K, Efremov, R, Heberle, J, Tittor, J, Oesterhelt, D. | | Deposit date: | 2006-11-28 | | Release date: | 2006-12-14 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.93 Å) | | Cite: | The crystal structure of the L1 intermediate of halorhodopsin at 1.9 angstroms resolution.
Photochem. Photobiol., 83, 2007
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4QI1
 | | Crystal structure of H. walsbyi bacteriorhodopsin | | Descriptor: | Bacteriorhodopsin-I, GLYCEROL, RETINAL, ... | | Authors: | Wang, A.H.J, Hsu, M.F, Yang, C.S, Fu, H.Y. | | Deposit date: | 2014-05-30 | | Release date: | 2015-07-29 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.85 Å) | | Cite: | Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity.
J. Biol. Chem., 290, 2015
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4QID
 | | Crystal structure of Haloquadratum walsbyi bacteriorhodopsin | | Descriptor: | ACETATE ION, Bacteriorhodopsin-I, RETINAL, ... | | Authors: | Wang, A.H.J, Hsu, M.F, Yang, C.S, Fu, H.Y. | | Deposit date: | 2014-05-30 | | Release date: | 2015-07-29 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.57 Å) | | Cite: | An acid-tolerant light-driven proton pump
To be Published
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2M3G
 | | Structure of Anabaena Sensory Rhodopsin Determined by Solid State NMR Spectroscopy | | Descriptor: | Anabaena Sensory Rhodopsin, RETINAL | | Authors: | Wang, S, Munro, R.A, Shi, L, Kawamura, I, Okitsu, T, Wada, A, Kim, S, Jung, K, Brown, L.S, Ladizhansky, V. | | Deposit date: | 2013-01-17 | | Release date: | 2013-08-21 | | Last modified: | 2024-10-16 | | Method: | SOLID-STATE NMR | | Cite: | Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein.
Nat.Methods, 10, 2013
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4TL3
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2L6X
 | | Solution NMR Structure of Proteorhodopsin. | | Descriptor: | Green-light absorbing proteorhodopsin, RETINAL | | Authors: | Reckel, S, Gottstein, D, Stehle, J, Loehr, F, Takeda, M, Silvers, R, Kainosho, M, Glaubitz, C, Bernhard, F, Schwalbe, H, Guntert, P, Doetsch, V, Membrane Protein Structures by Solution NMR (MPSbyNMR) | | Deposit date: | 2010-11-29 | | Release date: | 2011-11-09 | | Last modified: | 2024-11-20 | | Method: | SOLUTION NMR | | Cite: | Solution NMR structure of proteorhodopsin.
Angew.Chem.Int.Ed.Engl., 50, 2011
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2I1X
 | | Bacteriorhodopsin/lipid complex, D96A mutant | | Descriptor: | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, 2,10,23-TRIMETHYL-TETRACOSANE, Bacteriorhodopsin, ... | | Authors: | Lanyi, J.K, Schobert, B. | | Deposit date: | 2006-08-15 | | Release date: | 2006-10-10 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Propagating Structural Perturbation Inside Bacteriorhodopsin: Crystal Structures of the M State and the D96A and T46V Mutants.
Biochemistry, 45, 2006
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8CL7
 | | Krokinobacter eikastus rhodopsin 2 (KR2) in dark state | | Descriptor: | EICOSANE, RETINAL, Sodium pumping rhodopsin | | Authors: | Bertrand, Q, Wranik, M, Kepa, M.W, Weinert, T, Standfuss, J. | | Deposit date: | 2023-02-16 | | Release date: | 2023-12-13 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.76 Å) | | Cite: | A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers.
Nat Commun, 14, 2023
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8CL8
 | | Krokinobacter eikastus rhodopsin 2 (KR2) extrapolated map 1us after light activation | | Descriptor: | EICOSANE, RETINAL, Sodium pumping rhodopsin | | Authors: | Bertrand, Q, Kepa, M.W, Weinert, T, Wranik, M, Standfuss, J. | | Deposit date: | 2023-02-16 | | Release date: | 2023-12-13 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers.
Nat Commun, 14, 2023
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8R0N
 | | Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 10.5 in detergent in the ground state | | Descriptor: | DODECYL-BETA-D-MALTOSIDE, EICOSANE, RETINAL, ... | | Authors: | Kovalev, K, Marin, E, Stetsenko, A, Guskov, A, Lamm, G.H.U. | | Deposit date: | 2023-10-31 | | Release date: | 2025-05-14 | | Method: | ELECTRON MICROSCOPY (2.7 Å) | | Cite: | CryoRhodopsins: a new clade of microbial rhodopsins from cold environments
To Be Published
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8R0L
 | | Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 8.0 in nanodisc | | Descriptor: | EICOSANE, RETINAL, Rhodopsin | | Authors: | Kovalev, K, Marin, E, Stetsenko, A, Guskov, A, Lamm, G.H.U. | | Deposit date: | 2023-10-31 | | Release date: | 2025-05-14 | | Method: | ELECTRON MICROSCOPY (2.43 Å) | | Cite: | CryoRhodopsins: a new clade of microbial rhodopsins from cold environments
To Be Published
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8R0O
 | | Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 10.5 in detergent in the M state | | Descriptor: | DODECYL-BETA-D-MALTOSIDE, RETINAL, Rhodopsin | | Authors: | Kovalev, K, Marin, E, Stetsenko, A, Guskov, A, Lamm, G.H.U. | | Deposit date: | 2023-10-31 | | Release date: | 2025-05-14 | | Method: | ELECTRON MICROSCOPY (2.3 Å) | | Cite: | CryoRhodopsins: a new clade of microbial rhodopsins from cold environments
To Be Published
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8R0M
 | | Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 8.0 in detergent | | Descriptor: | DODECYL-BETA-D-MALTOSIDE, EICOSANE, RETINAL, ... | | Authors: | Kovalev, K, Marin, E, Stetsenko, A, Guskov, A, Lamm, G.H.U. | | Deposit date: | 2023-10-31 | | Release date: | 2025-05-14 | | Method: | ELECTRON MICROSCOPY (2.87 Å) | | Cite: | CryoRhodopsins: a new clade of microbial rhodopsins from cold environments
To Be Published
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8R0K
 | | Cryo-EM structure of the microbial rhodopsin CryoR1 at pH 4.3 in detergent | | Descriptor: | EICOSANE, RETINAL, Rhodopsin | | Authors: | Kovalev, K, Marin, E, Stetsenko, A, Guskov, A, Lamm, G.H.U. | | Deposit date: | 2023-10-31 | | Release date: | 2025-05-14 | | Method: | ELECTRON MICROSCOPY (2.94 Å) | | Cite: | CryoRhodopsins: a new clade of microbial rhodopsins from cold environments
To Be Published
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2Z55
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2ZFE
 | | Crystal structure of bacteriorhodopsin-xenon complex | | Descriptor: | 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, ... | | Authors: | Kouyama, T. | | Deposit date: | 2007-12-31 | | Release date: | 2008-11-11 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Effect of xenon binding to a hydrophobic cavity on the proton pumping cycle in bacteriorhodopsin
J.Mol.Biol., 384, 2008
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