Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3BTN
DownloadVisualize
BU of 3btn by Molmil
Crystal structure of antizyme inhibitor, an ornithine decarboxylase homologous protein
Descriptor: Antizyme inhibitor 1
Authors:Dym, O, Unger, T, Albeck, S, Kahana, C, Israel Structural Proteomics Center (ISPC)
Deposit date:2007-12-30
Release date:2008-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystallographic and biochemical studies revealing the structural basis for antizyme inhibitor function.
Protein Sci., 17, 2008
1HKV
DownloadVisualize
BU of 1hkv by Molmil
mycobacterium diaminopimelate dicarboxylase (lysa)
Descriptor: DIAMINOPIMELATE DECARBOXYLASE, LYSINE, PYRIDOXAL-5'-PHOSPHATE
Authors:Gokulan, K, Rupp, B, Pavelka Jr, M.S, Jacobs Jr, W.R, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2003-03-11
Release date:2003-03-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Mycobacterium Tuberculosis Diaminopimelate Decarboxylase, an Essential Enzyme in Bacterial Lysine Biosynthesis
J.Biol.Chem., 278, 2003
1TUF
DownloadVisualize
BU of 1tuf by Molmil
Crystal structure of Diaminopimelate Decarboxylase from m. jannaschi
Descriptor: AZELAIC ACID, Diaminopimelate decarboxylase
Authors:Rajashankar, K, Ray, S.R, Bonanno, J.B, Pinho, M.G, He, G, De Lencastre, H, Tomasz, A, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2004-06-24
Release date:2004-07-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor
Structure, 10, 2002
6N2A
DownloadVisualize
BU of 6n2a by Molmil
Meso-Diaminopimelate Decarboxylase from Arabidopsis thaliana (Isoform 1)
Descriptor: Diaminopimelate decarboxylase 1, chloroplastic, LYSINE, ...
Authors:Crowther, J.M, Dobson, R.C.J.
Deposit date:2018-11-12
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Active site gating provides stereochemical control for meso-diaminopimelate decarboxylase
To Be Published
6N2F
DownloadVisualize
BU of 6n2f by Molmil
Meso-Diaminopimelate Decarboxylase from Arabidopsis thaliana (Isoform 2)
Descriptor: Diaminopimelate decarboxylase 2, chloroplastic, LYSINE, ...
Authors:Crowther, J.M, Dobson, R.C.J.
Deposit date:2018-11-12
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Active site gating provides stereochemical control for meso-diaminopimelate decarboxylase
To Be Published
1SZR
DownloadVisualize
BU of 1szr by Molmil
A Dimer interface mutant of ornithine decarboxylase reveals structure of gem diamine intermediate
Descriptor: N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE, Ornithine decarboxylase, ...
Authors:Jackson, L.K, Baldwin, J, Goldsmith, E.J, Phillips, M.A.
Deposit date:2004-04-06
Release date:2004-10-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Multiple active site conformations revealed by distant site mutation in ornithine decarboxylase
Biochemistry, 43, 2004
1KNW
DownloadVisualize
BU of 1knw by Molmil
Crystal structure of diaminopimelate decarboxylase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Diaminopimelate decarboxylase, LITHIUM ION, ...
Authors:Levdikov, V, Blagova, L, Bose, N, Momany, C.
Deposit date:2001-12-19
Release date:2003-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation
To be Published
1KO0
DownloadVisualize
BU of 1ko0 by Molmil
Crystal Structure of a D,L-lysine complex of diaminopimelate decarboxylase
Descriptor: D-LYSINE, Diaminopimelate decarboxylase, LYSINE, ...
Authors:Levdikov, V, Blagova, L, Bose, N, Momany, C.
Deposit date:2001-12-19
Release date:2003-11-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation
To be Published
7S3G
DownloadVisualize
BU of 7s3g by Molmil
Structure of cofactor pyridoxal 5-phosphate bound human ornithine decarboxylase in complex with citrate at the catalytic center
Descriptor: CITRIC ACID, Ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Zhou, X.E, Suino-Powell, K, Schultz, C.R, Aleiwi, B, Brunzelle, J.S, Lamp, J, Vega, I.E, Ellsworth, E, Bachmann, A.S, Melcher, K.
Deposit date:2021-09-06
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural basis of binding and inhibition of ornithine decarboxylase by 1-amino-oxy-3-aminopropane.
Biochem.J., 478, 2021
7RU7
DownloadVisualize
BU of 7ru7 by Molmil
Crystal structure of BtrK, a decarboxylase involved in butirosin biosynthesis
Descriptor: DI(HYDROXYETHYL)ETHER, L-glutamyl-[BtrI acyl-carrier protein] decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Arenas, L.A.R, Paiva, F.C.R, Huang, F, Leadlay, P, Dias, M.V.B.
Deposit date:2021-08-16
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of BtrK, a decarboxylase involved in the (S)-4-amino-2-hydroxybutyrate (AHBA) formation during butirosin biosynthesis
J.Mol.Struct., 1267, 2022
7S3F
DownloadVisualize
BU of 7s3f by Molmil
Structure of cofactor pyridoxal 5-phosphate bound human ornithine decarboxylase in complex with its inhibitor 1-amino-oxy-3-aminopropane
Descriptor: 3-AMINOOXY-1-AMINOPROPANE, Ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Zhou, X.E, Suino-Powell, K, Schultz, C.R, Aleiwi, B, Brunzelle, J.S, Lamp, J, Vega, I.E, Ellsworth, E, Bachmann, A.S, Melcher, K.
Deposit date:2021-09-06
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural basis of binding and inhibition of ornithine decarboxylase by 1-amino-oxy-3-aminopropane.
Biochem.J., 478, 2021
6N2H
DownloadVisualize
BU of 6n2h by Molmil
Structure of D-ornithine/D-lysine decarboxylase from Salmonella typhimurium
Descriptor: 1,4-DIETHYLENE DIOXIDE, D-ornithine/D-lysine decarboxylase, DIMETHYL SULFOXIDE
Authors:Phillips, R.S, Hoover, T.R.
Deposit date:2018-11-13
Release date:2019-10-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal Structure of d-Ornithine/d-Lysine Decarboxylase, a Stereoinverting Decarboxylase: Implications for Substrate Specificity and Stereospecificity of Fold III Decarboxylases.
Biochemistry, 58, 2019
6KNK
DownloadVisualize
BU of 6knk by Molmil
Crystal structure of SbnH in complex with citryl-diaminoethane
Descriptor: (2S)-2-{2-[(2-AMINOETHYL)AMINO]-2-OXOETHYL}-2-HYDROXYBUTANEDIOIC ACID, (2~{S})-2-[2-[2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]ethylamino]-2-oxidanylidene-ethyl]-2-oxidanyl-butanedioic acid, PHOSPHATE ION, ...
Authors:Tang, J, Ju, Y, Zhou, H.
Deposit date:2019-08-05
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Insights into Substrate Recognition and Activity Regulation of the Key Decarboxylase SbnH in Staphyloferrin B Biosynthesis.
J.Mol.Biol., 431, 2019
6KNI
DownloadVisualize
BU of 6kni by Molmil
Crystal structure of SbnH in complex with the cofactor PLP, a PLP-dependent decarboxylase in Staphyloferrin B biothesynthesis
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Probable diaminopimelate decarboxylase protein
Authors:Tang, J, Ju, Y, Zhou, H.
Deposit date:2019-08-05
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural Insights into Substrate Recognition and Activity Regulation of the Key Decarboxylase SbnH in Staphyloferrin B Biosynthesis.
J.Mol.Biol., 431, 2019
1TWI
DownloadVisualize
BU of 1twi by Molmil
Crystal structure of Diaminopimelate Decarboxylase from m. jannaschii in co-complex with L-lysine
Descriptor: Diaminopimelate decarboxylase, LYSINE, MAGNESIUM ION, ...
Authors:Rajashankar, K.R, Ray, S.S, Bonanno, J.B, Pinho, M.G, He, G, De Lencastre, H, Tomasz, A, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2004-07-01
Release date:2004-07-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor
Structure, 10, 2002
6KNH
DownloadVisualize
BU of 6knh by Molmil
Crystal structure of SbnH in complex with citrate, a PLP-dependent decarboxylase in Staphyloferrin B biothesynthesis
Descriptor: CITRIC ACID, PHOSPHATE ION, Probable diaminopimelate decarboxylase protein
Authors:Tang, J, Ju, Y, Zhou, H.
Deposit date:2019-08-05
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural Insights into Substrate Recognition and Activity Regulation of the Key Decarboxylase SbnH in Staphyloferrin B Biosynthesis.
J.Mol.Biol., 431, 2019
3N2B
DownloadVisualize
BU of 3n2b by Molmil
1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (lysA) from Vibrio cholerae.
Descriptor: CHLORIDE ION, Diaminopimelate decarboxylase
Authors:Minasov, G, Halavaty, A, Shuvalova, L, Dubrovska, I, Winsor, J, Papazisi, L, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-05-17
Release date:2010-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.8 Angstrom Resolution Crystal Structure of Diaminopimelate Decarboxylase (lysA) from Vibrio cholerae.
To be Published
5GJO
DownloadVisualize
BU of 5gjo by Molmil
Crystal structure of SrLDC mutant (A225C/T302C) in complex with PLP
Descriptor: GLYCEROL, Lysine/ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Sagong, H.-Y, Kim, K.-J.
Deposit date:2016-07-01
Release date:2017-05-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Lysine Decarboxylase with an Enhanced Affinity for Pyridoxal 5-Phosphate by Disulfide Bond-Mediated Spatial Reconstitution
PLoS ONE, 12, 2017
5GJN
DownloadVisualize
BU of 5gjn by Molmil
Crystal structure of Lysine decarboxylase from Selenomonas ruminantium in P43212 space group
Descriptor: GLYCEROL, Lysine/ornithine decarboxylase, MAGNESIUM ION, ...
Authors:Sagong, H.-Y, Kim, K.-J.
Deposit date:2016-07-01
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure and Pyridoxal 5-Phosphate Binding Property of Lysine Decarboxylase from Selenomonas ruminantium
PLoS ONE, 11, 2016
5GJM
DownloadVisualize
BU of 5gjm by Molmil
Crystal structure of Lysine decarboxylase from Selenomonas ruminantium in C2 space group
Descriptor: GLYCEROL, Lysine/ornithine decarboxylase
Authors:Sagong, H.-Y, Kim, K.-J.
Deposit date:2016-07-01
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal Structure and Pyridoxal 5-Phosphate Binding Property of Lysine Decarboxylase from Selenomonas ruminantium
PLoS ONE, 11, 2016
5GJP
DownloadVisualize
BU of 5gjp by Molmil
Crystal structure of SrLDC in complex with PLP and Cadaverine
Descriptor: GLYCEROL, Lysine/ornithine decarboxylase, MAGNESIUM ION, ...
Authors:Sagong, H.-Y, Kim, K.-J.
Deposit date:2016-07-01
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure and Pyridoxal 5-Phosphate Binding Property of Lysine Decarboxylase from Selenomonas ruminantium
PLoS ONE, 11, 2016
8D4I
DownloadVisualize
BU of 8d4i by Molmil
Structure of Y430F D-ornithine/D-lysine decarboxylase complex with putrescine
Descriptor: 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Phillips, R.S, Nguyen Hoang, K.N.
Deposit date:2022-06-02
Release date:2022-11-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:The Y430F mutant of Salmonella d-ornithine/d-lysine decarboxylase has altered stereospecificity and a putrescine allosteric activation site.
Arch.Biochem.Biophys., 731, 2022
8D5D
DownloadVisualize
BU of 8d5d by Molmil
Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-arginine
Descriptor: (E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine, D-ornithine/D-lysine decarboxylase, DIMETHYL SULFOXIDE, ...
Authors:Phillips, R.S, Nguyen Hoang, K.N.
Deposit date:2022-06-04
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:The Y430F mutant of Salmonella d-ornithine/d-lysine decarboxylase has altered stereospecificity and a putrescine allosteric activation site.
Arch.Biochem.Biophys., 731, 2022
8D2Y
DownloadVisualize
BU of 8d2y by Molmil
Y430F mutant of D-ornithine/D-lysine decarboxylase
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ...
Authors:Phillips, R.S, Nguyen Hoang, K.N.
Deposit date:2022-05-31
Release date:2022-11-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:The Y430F mutant of Salmonella d-ornithine/d-lysine decarboxylase has altered stereospecificity and a putrescine allosteric activation site.
Arch.Biochem.Biophys., 731, 2022
8D5R
DownloadVisualize
BU of 8d5r by Molmil
Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-ornithine
Descriptor: 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ACETATE ION, ...
Authors:Phillips, R.S, Nguyen Hoang, K.N.
Deposit date:2022-06-06
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:The Y430F mutant of Salmonella d-ornithine/d-lysine decarboxylase has altered stereospecificity and a putrescine allosteric activation site.
Arch.Biochem.Biophys., 731, 2022

221051

数据于2024-06-12公开中

PDB statisticsPDBj update infoContact PDBjnumon