PDB: 493 resultsInfo pagesStatus searchChemie searchBIRD

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3JZ3	Structure of the cytoplasmic segment of histidine kinase QseC Descriptor: SULFATE ION, Sensor protein qseC Authors: Xie, W, Kwiatkowski, W, Choe, S, Center for Structures of Membrane Proteins (CSMP) Deposit date: 2009-09-22 Release date: 2010-07-21 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of the Cytoplasmic Segment of Histidine Kinase Receptor QseC, a Key Player in Bacterial Virulence. Protein Pept.Lett., 17, 2010
3JA6	Cryo-electron Tomography and All-atom Molecular Dynamics Simulations Reveal a Novel Kinase Conformational Switch in Bacterial Chemotaxis Signaling Descriptor: Chemotaxis protein CheA, Chemotaxis protein CheW, Methyl-accepting chemotaxis protein 2 Authors: Cassidy, C.K, Himes, B.A, Alvarez, F.J, Ma, J, Zhao, G, Perilla, J.R, Schulten, K, Zhang, P. Deposit date: 2015-04-21 Release date: 2015-12-09 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (12.7 Å) Cite: CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling. Elife, 4, 2015
3K60	Crystal structure of N-terminal domain of Plasmodium falciparum Hsp90 (PF07_0029) bound to ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, Heat shock protein 86, SULFATE ION Authors: Corbett, K.D, Berger, J.M. Deposit date: 2009-10-08 Release date: 2010-08-18 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of the ATP-binding domain of Plasmodium falciparum Hsp90. Proteins, 78, 2010
1KIJ	Crystal structure of the 43K ATPase domain of Thermus thermophilus gyrase B in complex with novobiocin Descriptor: DNA GYRASE SUBUNIT B, FORMIC ACID, NOVOBIOCIN Authors: Lamour, V, Hoermann, L, Jeltsch, J.-M, Oudet, P, Moras, D. Deposit date: 2001-12-03 Release date: 2002-06-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: An open conformation of the Thermus thermophilus gyrase B ATP-binding domain. J.Biol.Chem., 277, 2002
8U64	Cryo-EM structure of PsBphP in Pfr state, medial PSM only Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase Authors: Basore, K, Burgie, E.S, Vierstra, D. Deposit date: 2023-09-13 Release date: 2024-08-21 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor. Nat Commun, 15, 2024
8U8Z	Cryo-EM structure of PsBphP in Pr state, extended DHp Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase Authors: Basore, K, Burgie, E.S, Vierstra, D. Deposit date: 2023-09-18 Release date: 2024-08-21 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor. Nat Commun, 15, 2024
8U65	Cryo-EM structure of PsBphP in Pfr state, splayed PSM only Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase Authors: Basore, K, Burgie, E.S, Vierstra, D. Deposit date: 2023-09-13 Release date: 2024-08-21 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.01 Å) Cite: Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor. Nat Commun, 15, 2024
8U63	Cryo-EM structure of PsBphP in Pfr state, Dimer of Dimers PSM only Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase Authors: Basore, K, Burgie, E.S, Vierstra, D. Deposit date: 2023-09-13 Release date: 2024-08-21 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.01 Å) Cite: Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor. Nat Commun, 15, 2024
8U4X	Cryo-EM structure of PsBphP in Pr state Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase Authors: Basore, K, Burgie, E.S, Vierstra, D. Deposit date: 2023-09-11 Release date: 2024-08-21 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor. Nat Commun, 15, 2024
8U62	Cryo-EM structure of PsBphP in Pfr state, Dimer of Dimers FL Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase Authors: Basore, K, Burgie, E.S, Vierstra, D. Deposit date: 2023-09-13 Release date: 2024-08-21 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor. Nat Commun, 15, 2024
8UQI	Pr/Pfr heterodimeric state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2 Descriptor: Bacteriophytochrome (Light-regulated signal transduction histidine kinase) Authors: Malla, T.N, Schmidt, M, Stojkovic, E.A. Deposit date: 2023-10-23 Release date: 2024-09-25 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Photoreception and signaling in bacterial phytochrome revealed by single-particle cryo-EM. Sci Adv, 10, 2024
8UPH	Prf state of Stigmatella aurantiaca bacteriophytochrome 2 Descriptor: BILIVERDINE IX ALPHA, Bacteriophytochrome (Light-regulated signal transduction histidine kinase) Authors: Malla, T.N, Schmidt, M, Stojkovic, E.A. Deposit date: 2023-10-22 Release date: 2024-09-25 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (4.13 Å) Cite: Photoreception and signaling in bacterial phytochrome revealed by single-particle cryo-EM. Sci Adv, 10, 2024
8UQK	Pfr state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2 Descriptor: Bacteriophytochrome (Light-regulated signal transduction histidine kinase) Authors: Malla, T.N, Schmidt, M, Stojkovic, E.A. Deposit date: 2023-10-23 Release date: 2024-09-25 Method: ELECTRON MICROSCOPY (4.61 Å) Cite: Photoreception and signaling in bacterial phytochrome revealed by single-particle cryo-EM. Sci Adv, 10, 2024
8UPK	Pr/Pfr heterodimer (hybrid) state of Stigmatella aurantiaca bacteriophytochrome 2 Descriptor: BILIVERDINE IX ALPHA, Bacteriophytochrome (Light-regulated signal transduction histidine kinase) Authors: Malla, T.N, Schmidt, M, Stojkovic, E.A. Deposit date: 2023-10-22 Release date: 2024-09-25 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.75 Å) Cite: Photoreception and signaling in bacterial phytochrome revealed by single-particle cryo-EM. Sci Adv, 10, 2024
8UPM	Pfr state of Stigmatella aurantiaca bacteriophytochrome 2 Descriptor: BILIVERDINE IX ALPHA, Bacteriophytochrome (Light-regulated signal transduction histidine kinase) Authors: Malla, T.N, Schmidt, M, Stojkovic, E.A. Deposit date: 2023-10-23 Release date: 2024-09-25 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.75 Å) Cite: Photoreception and signaling in bacterial phytochrome revealed by single-particle cryo-EM. Sci Adv, 10, 2024
8VC9	Hybrid response regulator LvrB from Leptospira / phosphorylated REC form Descriptor: BERYLLIUM TRIFLUORIDE ION, Leptospira virulence regulator B (LvrB), MAGNESIUM ION, ... Authors: Mechaly, A, Buschiazzo, A. Deposit date: 2023-12-13 Release date: 2024-12-18 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Coiled coil formation and symmetry breaking activates the Leptospira virulence regulator LvrB, a hybrid response regulator To Be Published
5ZXM	Crystal Structure of GyraseB N-terminal at 1.93A Resolution Descriptor: ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, DNA gyrase subunit B, ... Authors: Tiwari, P, Gupta, D, Sachdeva, E, Sharma, S, Singh, T.P, Ethayathulla, A.S, Kaur, P. Deposit date: 2018-05-21 Release date: 2019-05-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.938 Å) Cite: Structural insights into the transient closed conformation and pH dependent ATPase activity of S.Typhi GyraseB N- terminal domain. Arch.Biochem.Biophys., 701, 2021
6AZR	Crystal structure of the T264A HK853cp-BeF3-RR468 complex Descriptor: Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Rose, J, Zhou, P. Deposit date: 2017-09-11 Release date: 2017-12-27 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (3.628 Å) Cite: A pH-gated conformational switch regulates the phosphatase activity of bifunctional HisKA-family histidine kinases. Nat Commun, 8, 2017
4GCZ	Structure of a blue-light photoreceptor Descriptor: ADENOSINE-5'-DIPHOSPHATE, Blue-light photoreceptor, Sensor protein fixL, ... Authors: Diensthuber, R.P, Bommer, M, Moglich, A. Deposit date: 2012-07-31 Release date: 2013-06-19 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Full-length structure of a sensor histidine kinase pinpoints coaxial coiled coils as signal transducers and modulators. Structure, 21, 2013
4GFH	Topoisomerase II-DNA-AMPPNP complex Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3'), ... Authors: Schmidt, B.H, Osheroff, N, Berger, J.M. Deposit date: 2012-08-03 Release date: 2012-10-03 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (4.408 Å) Cite: Structure of a topoisomerase II-DNA-nucleotide complex reveals a new control mechanism for ATPase activity. Nat.Struct.Mol.Biol., 19, 2012
4XTJ	N-terminal 43 kDa fragment of the E. coli DNA gyrase B subunit grown from 100 mM KCl plus 100 mM NaCl condition Descriptor: CHLORIDE ION, DNA gyrase subunit B, MAGNESIUM ION, ... Authors: Hearnshaw, S.J, Chung, T.T, Stevenson, C.E.M, Maxwell, A, Lawson, D.M. Deposit date: 2015-01-23 Release date: 2015-04-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.92 Å) Cite: The role of monovalent cations in the ATPase reaction of DNA gyrase Acta Crystallogr.,Sect.D, 71, 2015
4WUC	N-terminal 43 kDa fragment of the E. coli DNA gyrase B subunit grown from 100 mM NaCl condition Descriptor: CHLORIDE ION, DNA gyrase subunit B, MAGNESIUM ION, ... Authors: Hearnshaw, S.J, Chung, T.T, Stevenson, C.E.M, Maxwell, A, Lawson, D.M. Deposit date: 2014-10-31 Release date: 2015-04-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The role of monovalent cations in the ATPase reaction of DNA gyrase Acta Crystallogr.,Sect.D, 71, 2015
4WUD	N-terminal 43 kDa fragment of the E. coli DNA gyrase B subunit grown from no salt condition Descriptor: CHLORIDE ION, DNA gyrase subunit B, MAGNESIUM ION, ... Authors: Hearnshaw, S.J, Chung, T.T, Stevenson, C.E.M, Maxwell, A, Lawson, D.M. Deposit date: 2014-10-31 Release date: 2015-04-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.95 Å) Cite: The role of monovalent cations in the ATPase reaction of DNA gyrase Acta Crystallogr.,Sect.D, 71, 2015
4WUB	N-terminal 43 kDa fragment of the E. coli DNA gyrase B subunit grown from 100 mM KCl condition Descriptor: CHLORIDE ION, DNA gyrase subunit B, MAGNESIUM ION, ... Authors: Hearnshaw, S.J, Chung, T.T, Stevenson, C.E.M, Maxwell, A, Lawson, D.M. Deposit date: 2014-10-31 Release date: 2015-04-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.75 Å) Cite: The role of monovalent cations in the ATPase reaction of DNA gyrase Acta Crystallogr.,Sect.D, 71, 2015
6QRJ	Crystal structure of ShkA full-length in complex with AMPPNP Descriptor: Hybrid kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Dubey, B.N, Schirmer, T. Deposit date: 2019-02-19 Release date: 2020-01-08 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Hybrid histidine kinase activation by cyclic di-GMP-mediated domain liberation. Proc.Natl.Acad.Sci.USA, 117, 2020

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