Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YCH
DownloadVisualize
BU of 5ych by Molmil
Ancestral myoglobin aMbWb of Basilosaurus relative (monophyly)
Descriptor: Ancestral myoglobin aMbWb of Basilosaurus relative (monophyly), PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Nakagawa, T, Tsuneshige, A, Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.354 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5YCG
DownloadVisualize
BU of 5ycg by Molmil
Ancestral myoglobin aMbWp of Pakicetus relative
Descriptor: Ancestral myoglobin aMbWp of Pakicetus relative, PROTOPORPHYRIN IX CONTAINING FE
Authors:Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Nakagawa, T, Tsuneshige, A, Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5YCI
DownloadVisualize
BU of 5yci by Molmil
Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly)
Descriptor: Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly), PROTOPORPHYRIN IX CONTAINING FE
Authors:Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Nakagawa, T, Tsuneshige, A, Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5YCE
DownloadVisualize
BU of 5yce by Molmil
Sperm whale myoglobin swMb
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Nakagawa, T, Tsuneshige, A, Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.77 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5YL3
DownloadVisualize
BU of 5yl3 by Molmil
Crystal structure of horse heart myoglobin reconstituted with manganese porphycene in resting state at pH 8.5
Descriptor: Myoglobin, PORPHYCENE CONTAINING MN, SULFATE ION
Authors:Oohora, K, Meichin, H, Kihira, Y, Sugimoto, H, Shiro, Y, Hayashi, T.
Deposit date:2017-10-17
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Manganese(V) Porphycene Complex Responsible for Inert C-H Bond Hydroxylation in a Myoglobin Matrix.
J. Am. Chem. Soc., 139, 2017
5YCJ
DownloadVisualize
BU of 5ycj by Molmil
Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly) imidazole-ligand
Descriptor: Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly), IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Nakagawa, T, Tsuneshige, A, Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5ZIQ
DownloadVisualize
BU of 5ziq by Molmil
Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 4
Descriptor: 1,2-ETHANEDIOL, Globin protein, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Kim, J, Fukuda, Y, Inoue, T.
Deposit date:2018-03-16
Release date:2019-01-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus.
FEBS J., 286, 2019
5YZF
DownloadVisualize
BU of 5yzf by Molmil
X-ray crystal structure of met K42C sperm whale myoglobin
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, sperm whale myoglobin
Authors:Yuan, H.
Deposit date:2017-12-14
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Formation of Cys-heme cross-link in K42C myoglobin under reductive conditions with molecular oxygen
J. Inorg. Biochem., 182, 2018
5Z7E
DownloadVisualize
BU of 5z7e by Molmil
Horse Heart Myoglobin Mutant - H93M
Descriptor: Myoglobin, NITRITE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Yi, J.
Deposit date:2018-01-28
Release date:2019-01-30
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Horse Heart Myoglobin Mutant - H93M
To Be Published
5Z7F
DownloadVisualize
BU of 5z7f by Molmil
Horse Heart Myoglobin Mutant -V68A/I107Y-Sulfide Derivative
Descriptor: GLYCEROL, HYDROSULFURIC ACID, Myoglobin, ...
Authors:Yi, J.
Deposit date:2018-01-28
Release date:2019-01-30
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Horse Heart Myoglobin Mutant -V68A/I107Y-Sulfide Derivative
To Be Published
5WOH
DownloadVisualize
BU of 5woh by Molmil
Human Hemoglobin Immersed in Liquid Oxygen for 20 seconds
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gumpper, R.H, Terrell, J.R, Luo, M.
Deposit date:2017-08-02
Release date:2018-01-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Hemoglobin crystals immersed in liquid oxygen reveal diffusion channels.
Biochem. Biophys. Res. Commun., 495, 2018
5ZM9
DownloadVisualize
BU of 5zm9 by Molmil
Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 7
Descriptor: CHLORIDE ION, Globin Protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kim, J, Fukuda, Y, Inoue, T.
Deposit date:2018-04-02
Release date:2019-01-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus.
FEBS J., 286, 2019
5ZEO
DownloadVisualize
BU of 5zeo by Molmil
X-ray structure of sperm whale V21C/V66C/F46S myoglobin mutant with an intramolecular disulfide bond
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H.
Deposit date:2018-02-27
Release date:2018-05-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Regulation of both the structure and function by a de novo designed disulfide bond: a case study of heme proteins in myoglobin
Chem. Commun. (Camb.), 54, 2018
5ZZF
DownloadVisualize
BU of 5zzf by Molmil
X-ray structure of F43Y/H64D sperm whale myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H, Lin, Y.W.
Deposit date:2018-06-01
Release date:2018-10-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Rationally Designed Myoglobin Exhibits a Catalytic Dehalogenation Efficiency More than 1000-Fold That of a Native Dehaloperoxidase
Acs Catalysis, 8, 2018
5ZZE
DownloadVisualize
BU of 5zze by Molmil
Crystal structure of horse myoglobin crystallized by ammonium sulfate
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Kitahara, M, Fudo, S, Yoneda, T, Nukaga, M, Hoshino, T.
Deposit date:2018-06-01
Release date:2019-02-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.423 Å)
Cite:Anisotropic Distribution of Ammonium Sulfate Ions in Protein Crystallization
Cryst.Growth Des., 19, 2019
5ZZG
DownloadVisualize
BU of 5zzg by Molmil
X-ray structure of F43Y/H64D sperm whale myoglobin in complex with TCP
Descriptor: 2,4,6-trichlorophenol, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H, Lin, Y.W.
Deposit date:2018-06-01
Release date:2018-10-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Rationally Designed Myoglobin Exhibits a Catalytic Dehalogenation Efficiency More than 1000-Fold That of a Native Dehaloperoxidase
Acs Catalysis, 8, 2018
5B84
DownloadVisualize
BU of 5b84 by Molmil
X-ray crystal structure of met I107Y sperm whale myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H.
Deposit date:2016-06-12
Release date:2016-08-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Distinct roles of a tyrosine-associated hydrogen-bond network in fine-tuning the structure and function of heme proteins: two cases designed for myoglobin
Mol Biosyst, 12, 2016
5U3I
DownloadVisualize
BU of 5u3i by Molmil
CRYSTAL STRUCTURE OF CARBONMONOXY HEMOGLOBIN S (LIGANDED SICKLE CELL HEMOGLOBIN) COMPLEXED WITH GBT compound 31
Descriptor: 2-methoxy-5-({2-[1-(propan-2-yl)-1H-pyrazol-5-yl]pyridin-3-yl}methoxy)pyridine-4-carbaldehyde, CARBON MONOXIDE, Hemoglobin subunit alpha, ...
Authors:Partridge, J.R, Choy, R.M, Li, Z, Metcalf, B.
Deposit date:2016-12-02
Release date:2017-02-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery of GBT440, an Orally Bioavailable R-State Stabilizer of Sickle Cell Hemoglobin.
ACS Med Chem Lett, 8, 2017
5B85
DownloadVisualize
BU of 5b85 by Molmil
X-ray structure of ferric F138Y sperm whale myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H.
Deposit date:2016-06-12
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Distinct roles of a tyrosine-associated hydrogen-bond network in fine-tuning the structure and function of heme proteins: two cases designed for myoglobin
Mol Biosyst, 12, 2016
5CN5
DownloadVisualize
BU of 5cn5 by Molmil
Ultrafast dynamics in myoglobin: 0 ps time delay
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science, 350, 2015
5UFJ
DownloadVisualize
BU of 5ufj by Molmil
Crystal Structure of Carbonmonoxy Hemoglobin S (Liganded Sickle Cell Hemoglobin) Complexed with GBT Compound 6
Descriptor: 5-[(imidazo[1,2-a]pyridin-8-yl)methoxy]-2-methoxypyridine-4-carbaldehyde, CARBON MONOXIDE, Hemoglobin subunit alpha, ...
Authors:Partridge, J.R, Choy, R.M, Li, Z, Metcalf, B.
Deposit date:2017-01-04
Release date:2017-02-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery of GBT440, an Orally Bioavailable R-State Stabilizer of Sickle Cell Hemoglobin.
ACS Med Chem Lett, 8, 2017
5CMV
DownloadVisualize
BU of 5cmv by Molmil
Ultrafast dynamics in myoglobin: dark-state, CO-ligated structure
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science, 350, 2015
5CND
DownloadVisualize
BU of 5cnd by Molmil
Ultrafast dynamics in myoglobin: 3 ps time delay
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science, 350, 2015
5C6Y
DownloadVisualize
BU of 5c6y by Molmil
A sperm whale myoglobin double mutant L29H/F43Y Mb with a Tyr-heme cross-link
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H, Lin, Y.W, Tan, X.S.
Deposit date:2015-06-24
Release date:2015-11-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.793 Å)
Cite:How a novel tyrosine-heme cross-link fine-tunes the structure and functions of heme proteins: a direct comparitive study of L29H/F43Y myoglobin
Dalton Trans, 44, 2015
5CHQ
DownloadVisualize
BU of 5chq by Molmil
Dehaloperoxidase B in complex with substrate p-nitrophenol
Descriptor: Dehaloperoxidase B, GLYCEROL, P-NITROPHENOL, ...
Authors:Carey, L, Ghiladi, R.
Deposit date:2015-07-10
Release date:2016-04-27
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Nonmicrobial Nitrophenol Degradation via Peroxygenase Activity of Dehaloperoxidase-Hemoglobin from Amphitrite ornata.
Biochemistry, 55, 2016

225946

数据于2024-10-09公开中

PDB statisticsPDBj update infoContact PDBjnumon