Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6EUT
DownloadVisualize
BU of 6eut by Molmil
The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (KSK67)
Descriptor: (3~{R})-8-cyclopropyl-7-[(4-methylnaphthalen-1-yl)methyl]-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Begum, A, Hall, M, Grundstrom, C, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E.
Deposit date:2017-10-31
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.
J. Med. Chem., 61, 2018
6EUZ
DownloadVisualize
BU of 6euz by Molmil
The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (MK37)
Descriptor: (3~{R})-8-methoxy-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid, ISOPROPYL ALCOHOL, Listeriolysin positive regulatory factor A, ...
Authors:Begum, A, Hall, M, Grundstrom, C, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E.
Deposit date:2017-10-31
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.
J. Med. Chem., 61, 2018
4LGD
DownloadVisualize
BU of 4lgd by Molmil
Structural Basis for Autoactivation of Human Mst2 Kinase and Its Regulation by RASSF5
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Ras association domain family member 5, ...
Authors:Luo, X, Ni, L, Tomchick, D.R.
Deposit date:2013-06-27
Release date:2013-09-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural Basis for Autoactivation of Human Mst2 Kinase and Its Regulation by RASSF5.
Structure, 21, 2013
6ESQ
DownloadVisualize
BU of 6esq by Molmil
Structure of the acetoacetyl-CoA thiolase/HMG-CoA synthase complex from Methanothermococcus thermolithotrophicus soaked with acetyl-CoA
Descriptor: CHLORIDE ION, COENZYME A, HydroxyMethylGlutaryl-CoA synthase, ...
Authors:Voegeli, B, Engilberge, S, Girard, E, Riobe, F, Maury, O, Erb, J.T, Shima, S, Wagner, T.
Deposit date:2017-10-24
Release date:2018-03-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6EUU
DownloadVisualize
BU of 6euu by Molmil
The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (KSK29)
Descriptor: (3~{R})-8-cyclopropyl-5-oxidanylidene-7-(quinolin-3-ylmethyl)-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid, ISOPROPYL ALCOHOL, Listeriolysin positive regulatory factor A, ...
Authors:Begum, A, Hall, M, Grundstrom, C, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E.
Deposit date:2017-10-31
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.
J. Med. Chem., 61, 2018
6EZI
DownloadVisualize
BU of 6ezi by Molmil
PDZK1 domain 4 in complex with C-terminal peptide of human PepT2.
Descriptor: GLYCEROL, Na(+)/H(+) exchange regulatory cofactor NHE-RF3, Solute carrier family 15 member 2
Authors:Loew, C, Flayhan, A, Pieprzyk, J.
Deposit date:2017-11-15
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.503321 Å)
Cite:Probing the Architecture of a Multi-PDZ Domain Protein: Structure of PDZK1 in Solution.
Structure, 26, 2018
6A0U
DownloadVisualize
BU of 6a0u by Molmil
Homoserine dehydrogenase K195A mutant from Thermus thermophilus HB8 complexed with HSE and NADP+
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, FORMIC ACID, GLYCEROL, ...
Authors:Akai, S, Ikushiro, H, Sawai, T, Yano, T, Kamiya, N, Miyahara, I.
Deposit date:2018-06-06
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:The crystal structure of homoserine dehydrogenase complexed with l-homoserine and NADPH in a closed form
J. Biochem., 165, 2019
4KLI
DownloadVisualize
BU of 4kli by Molmil
DNA polymerase beta matched product complex with Mg2+, 90 s
Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Freudenthal, B.D, Beard, W.A, Shock, D.D, Wilson, S.H.
Deposit date:2013-05-07
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.597 Å)
Cite:Observing a DNA polymerase choose right from wrong.
Cell(Cambridge,Mass.), 154, 2013
6F5V
DownloadVisualize
BU of 6f5v by Molmil
Crystal structure of the prephenate aminotransferase from Arabidopsis thaliana
Descriptor: Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase, CITRIC ACID, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Cobessi, D, Robin, A, Giustini, C, Graindorge, M, Matringe, M.
Deposit date:2017-12-03
Release date:2019-03-13
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Tyrosine metabolism: identification of a key residue in the acquisition of prephenate aminotransferase activity by 1 beta aspartate aminotransferase.
Febs J., 286, 2019
6F9M
DownloadVisualize
BU of 6f9m by Molmil
The LIPY/F-motif in an intracellular subtilisin protease is involved in inhibition
Descriptor: ACETATE ION, SODIUM ION, Serine protease, ...
Authors:Bjerga, G.E.K, Larsen, O, Arsin, H, Williamson, A.K, Garcia-Moyano, A, Leiros, I, Puntervoll, P.
Deposit date:2017-12-14
Release date:2018-06-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.298 Å)
Cite:Mutational analysis of the pro-peptide of a marine intracellular subtilisin protease supports its role in inhibition.
Proteins, 86, 2018
3QXT
DownloadVisualize
BU of 3qxt by Molmil
Structure of an Anti-Methotrexate CDR1-3 Graft VHH Antibody in Complex with Methotrexate
Descriptor: Anti-Methotrexate CDR1-3 Graft VHH, METHOTREXATE, SODIUM ION
Authors:Fanning, S.W, Horn, J.R.
Deposit date:2011-03-02
Release date:2011-07-06
Last modified:2013-09-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:An anti-hapten camelid antibody reveals a cryptic binding site with significant energetic contributions from a nonhypervariable loop.
Protein Sci., 20, 2011
6EYP
DownloadVisualize
BU of 6eyp by Molmil
X-ray structure of the unliganded uridine phosphorylase from Vibrio cholerae at 1.22A
Descriptor: GLYCEROL, MAGNESIUM ION, SODIUM ION, ...
Authors:Prokofev, I.I, Balaev, V.V, Gabdoulkhakov, A.G, Betzel, C, Lashkov, A.A.
Deposit date:2017-11-13
Release date:2018-11-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:X-ray structure of the unliganded uridine phosphorylase from Vibrio cholerae at 1.22A
To Be Published
3AXG
DownloadVisualize
BU of 3axg by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase
Descriptor: Endotype 6-aminohexanoat-oligomer hydrolase, SODIUM ION
Authors:Negoro, S, Shibata, N, Tanaka, Y, Yasuhira, K, Shibata, H, Hashimoto, H, Lee, Y.H, Ohshima, S, Santa, R, Mochiji, K, Goto, Y, Ikegami, T, Nagai, K, Kato, D, Takeo, M, Higuchi, Y.
Deposit date:2011-04-04
Release date:2011-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structure of nylon hydrolase and mechanism of nylon-6 hydrolysis
J.Biol.Chem., 287, 2012
6EXK
DownloadVisualize
BU of 6exk by Molmil
The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (MK206) - unfolded HTH motif
Descriptor: ISOPROPYL ALCOHOL, Listeriolysin regulatory protein, SODIUM ION, ...
Authors:Hall, M, Grundstrom, C, Begum, A, Kulen, M, Lindgren, M, Johansson, J, Almqvist, F, Sauer, U.H, Sauer-Eriksson, A.E.
Deposit date:2017-11-08
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-Based Design of Inhibitors Targeting PrfA, the Master Virulence Regulator of Listeria monocytogenes.
J. Med. Chem., 61, 2018
2FBL
DownloadVisualize
BU of 2fbl by Molmil
The crystal structure of the hypothetical protein NE1496
Descriptor: SODIUM ION, hypothetical protein NE1496
Authors:Lunin, V.V, Skarina, T, Onopriyenko, O, Binkowski, T.A, Joachimiak, A, Edwards, A.M, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-12-09
Release date:2005-12-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of the hypothetical protein NE1496
To be Published
6BVE
DownloadVisualize
BU of 6bve by Molmil
Triosephosphate isomerase of Synechocystis in complex with 2-Phosphoglycolic acid
Descriptor: 2-PHOSPHOGLYCOLIC ACID, SODIUM ION, Triosephosphate isomerase
Authors:Jimenez-Sandoval, P, Castro-Torres, E, Brieba, L.G.
Deposit date:2017-12-12
Release date:2018-12-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic BacteriaSynechocystis.
Front Mol Biosci, 5, 2018
6BTE
DownloadVisualize
BU of 6bte by Molmil
DNA Polymerase Beta I260Q Binary Complex
Descriptor: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2017-12-06
Release date:2018-09-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity.
Nucleic Acids Res., 46, 2018
6AJX
DownloadVisualize
BU of 6ajx by Molmil
Crystal structure of BRD4 in complex with isoliquiritigenin in the absence of DMSO
Descriptor: 2',4,4'-TRIHYDROXYCHALCONE, Bromodomain-containing protein 4, SODIUM ION
Authors:Yokoyama, T, Matsumoto, K, Nabeshima, Y, Mizuguchi, M.
Deposit date:2018-08-28
Release date:2019-06-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.887 Å)
Cite:Structural and thermodynamic characterization of the binding of isoliquiritigenin to the first bromodomain of BRD4.
Febs J., 286, 2019
4J0N
DownloadVisualize
BU of 4j0n by Molmil
Crystal structure of a manganese dependent isatin hydrolase
Descriptor: CALCIUM ION, Isatin hydrolase B, MANGANESE (II) ION, ...
Authors:Bjerregaard-Andersen, K, Sommer, T, Jensen, J.K, Jochimsen, B, Etzerodt, M, Morth, J.P.
Deposit date:2013-01-31
Release date:2013-02-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A proton wire and water channel revealed in the crystal structure of isatin hydrolase.
J.Biol.Chem., 289, 2014
6AID
DownloadVisualize
BU of 6aid by Molmil
Structural insights into the unique polylactate degrading mechanism of Thermobifida alba cutinase
Descriptor: CALCIUM ION, Esterase, LACTIC ACID, ...
Authors:Kitadokoro, K, Kakara, M, Matsui, S, Osokoshi, R, Thumarat, U, Kawai, F, Kamitani, S.
Deposit date:2018-08-22
Release date:2019-02-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural insights into the unique polylactate-degrading mechanism of Thermobifida alba cutinase.
Febs J., 286, 2019
6C39
DownloadVisualize
BU of 6c39 by Molmil
Apo crystal structure of wild-type S. aureus penicillin binding protein 4 (PBP4)
Descriptor: SODIUM ION, SULFATE ION, Serine-type D-Ala-D-Ala carboxypeptidase, ...
Authors:Alexander, J.A.N, Strynadka, N.C.J.
Deposit date:2018-01-09
Release date:2018-11-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structural and kinetic analyses of penicillin-binding protein 4 (PBP4)-mediated antibiotic resistance inStaphylococcus aureus.
J. Biol. Chem., 293, 2018
4LS8
DownloadVisualize
BU of 4ls8 by Molmil
Crystal structure of Bacillus subtilis beta-ketoacyl-ACP synthase II (FabF) in a covalent complex with cerulenin
Descriptor: (3R,7E,10E)-3-hydroxy-4-oxododeca-7,10-dienamide, 1,2-ETHANEDIOL, 3-oxoacyl-[acyl-carrier-protein] synthase 2, ...
Authors:Trajtenberg, F, Larrieux, N, Buschiazzo, A.
Deposit date:2013-07-22
Release date:2014-04-02
Last modified:2014-06-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into bacterial resistance to cerulenin.
Febs J., 281, 2014
2X8J
DownloadVisualize
BU of 2x8j by Molmil
Intracellular subtilisin precursor from B. clausii
Descriptor: GLYCEROL, INTRACELLULAR SUBTILISIN PROTEASE, PENTAETHYLENE GLYCOL, ...
Authors:Vedodova, J, Gamble, M, Ariza, A, Dodson, E, Jones, D.D, Wilson, K.S.
Deposit date:2010-03-09
Release date:2010-08-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Crystal structure of an intracellular subtilisin reveals novel structural features unique to this subtilisin family.
Structure, 18, 2010
6B4N
DownloadVisualize
BU of 6b4n by Molmil
a hydroxymethyl functionality at the 4-position of the 2-phenyloxazole moiety of HIV-1 protease inhibitors involving the P2' ligands
Descriptor: CHLORIDE ION, Protease, SODIUM ION, ...
Authors:Wang, Y.-F, Agniswamy, J, Weber, I.T.
Deposit date:2017-09-27
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Design, Synthesis, Biological Evaluation, and X-ray Studies of HIV-1 Protease Inhibitors with Modified P2' Ligands of Darunavir.
ChemMedChem, 12, 2017
4KLQ
DownloadVisualize
BU of 4klq by Molmil
Observing a DNA polymerase choose right from wrong.
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*A)-3', ...
Authors:Freudenthal, B.D, Beard, W.A, Shock, D.D, Wilson, S.H.
Deposit date:2013-05-07
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Observing a DNA polymerase choose right from wrong.
Cell(Cambridge,Mass.), 154, 2013

223532

数据于2024-08-07公开中

PDB statisticsPDBj update infoContact PDBjnumon