PDB: 224572 resultsInfo pagesStatus searchChemie searchBIRD

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2D5D	Structure of Biotin Carboxyl Carrier Protein (74Val start) from Pyrococcus horikoshi OT3 Ligand Free Form II Descriptor: methylmalonyl-CoA decarboxylase gamma chain Authors: Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-11-01 Release date: 2006-05-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Protein biotinylation visualized by a complex structure of biotin protein ligase with a substrate J.Biol.Chem., 283, 2008
2D5F	Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly Descriptor: CARBONATE ION, MAGNESIUM ION, glycinin A3B4 subunit Authors: Itoh, T, Adachi, M, Masuda, T, Mikami, B, Utsumi, S. Deposit date: 2005-11-01 Release date: 2006-11-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta, 2010
2D5G	Structure of ubiquitin fold protein R767E mutant Descriptor: Axin-1, MERCURY (II) ION Authors: Shibata, N, Higuchi, Y. Deposit date: 2005-11-01 Release date: 2006-11-01 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure of ubiquitin fold protein R767E mutant to be published
2D5H	Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly Descriptor: CARBONATE ION, MAGNESIUM ION, glycinin A3B4 subunit Authors: Itoh, T, Adachi, M, Masuda, T, Mikami, B, Utsumi, S. Deposit date: 2005-11-01 Release date: 2006-11-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta, 2010
2D5I	The crystal structure of AzoR (Azo Reductase) from Escherichia coli Descriptor: Azo Reductase, FLAVIN MONONUCLEOTIDE, GLYCEROL Authors: Ito, K, Tanokura, M. Deposit date: 2005-11-02 Release date: 2006-05-16 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Three-dimensional structure of AzoR from Escherichia coli. An oxidereductase conserved in microorganisms J.Biol.Chem., 281, 2006
2D5J	Unsaturated Glucuronyl Hydrolase Triggers Hydration of Vinyl Ether Group but not of Glycosidic Bond Descriptor: unsaturated glucuronyl hydrolase Authors: Itoh, T, Hashimoto, W, Mikami, B, Murata, K. Deposit date: 2005-11-02 Release date: 2006-08-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM J.Biol.Chem., 281, 2006
2D5K	Crystal structure of Dps from Staphylococcus aureus Descriptor: Dps family protein, GLYCEROL Authors: Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I. Deposit date: 2005-11-02 Release date: 2006-10-17 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages FEMS Microbiol. Lett., 360, 2014
2D5L	Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis Descriptor: SULFATE ION, dipeptidyl aminopeptidase IV, putative Authors: Nakajima, Y, Ito, K, Xu, Y, Yamada, N, Onohara, Y, Yoshimoto, T. Deposit date: 2005-11-02 Release date: 2006-09-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis J.Mol.Biol., 362, 2006
2D5M	Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F) Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN MONONUCLEOTIDE, ZINC ION, ... Authors: Ueda, Y, Shibata, N, Higuchi, Y. Deposit date: 2005-11-02 Release date: 2006-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.05 Å) Cite: Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F) To be Published
2D5N	Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Riboflavin biosynthesis protein ribD, ZINC ION Authors: Liaw, S.H, Chen, S.J, Chang, Y.C. Deposit date: 2005-11-02 Release date: 2005-11-29 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis To be Published
2D5R	Crystal Structure of a Tob-hCaf1 Complex Descriptor: CCR4-NOT transcription complex subunit 7, Tob1 protein Authors: Horiuchi, M, Suzuki, N.N, Muroya, N, Takahasi, K, Nishida, M, Yoshida, Y, Ikematsu, N, Nakamura, T, Kawamura-Tsuzuku, J, Yamamoto, T, Inagaki, F. Deposit date: 2005-11-04 Release date: 2006-12-12 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for the antiproliferative activity of the Tob-hCaf1 complex. J.Biol.Chem., 284, 2009
2D5U	Solution structure of the N-terminal portion of the PUB domain of mouse peptide:N-glycanase Descriptor: N-glycanase 1 Authors: Sasakawa, H, Hirao, T, Yamaguchi, Y, Suzuki, T, Kato, K. Deposit date: 2005-11-06 Release date: 2006-11-21 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the N-terminal portion of the PUB domain of mouse peptide:N-glycanase To be Published
2D5V	Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter Descriptor: 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ... Authors: Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I. Deposit date: 2005-11-07 Release date: 2006-12-05 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6 Structure, 15, 2007
2D5W	The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide Descriptor: pentapeptide A, pentapeptide B, peptide ABC transporter, ... Authors: Morita, A. Deposit date: 2005-11-07 Release date: 2006-10-17 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.3 Å) Cite: The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide To be Published
2D5X	Crystal structure of carbonmonoxy horse hemoglobin complexed with L35 Descriptor: 2-[4-({[(3,5-DICHLOROPHENYL)AMINO]CARBONYL}AMINO)PHENOXY]-2-METHYLPROPANOIC ACID, CARBON MONOXIDE, Hemoglobin alpha subunit, ... Authors: Yokoyama, T, Neya, S, Tsuneshige, A, Yonetani, T, Park, S.Y, Tame, J.R. Deposit date: 2005-11-08 Release date: 2006-03-07 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.45 Å) Cite: R-state haemoglobin with low oxygen affinity: crystal structures of deoxy human and carbonmonoxy horse haemoglobin bound to the effector molecule L35 J.Mol.Biol., 356, 2006
2D5Y	Aspartate Aminotransferase Mutant MC With Isovaleric Acid Descriptor: Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE Authors: Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. Deposit date: 2005-11-08 Release date: 2006-11-14 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.98 Å) Cite: The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
2D5Z	Crystal structure of T-state human hemoglobin complexed with three L35 molecules Descriptor: 2-[4-({[(3,5-DICHLOROPHENYL)AMINO]CARBONYL}AMINO)PHENOXY]-2-METHYLPROPANOIC ACID, Hemoglobin alpha subunit, Hemoglobin beta subunit, ... Authors: Yokoyama, T, Neya, S, Tsuneshige, A, Yonetani, T, Park, S.Y, Tame, J.R. Deposit date: 2005-11-08 Release date: 2006-03-07 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.45 Å) Cite: R-state haemoglobin with low oxygen affinity: crystal structures of deoxy human and carbonmonoxy horse haemoglobin bound to the effector molecule L35 J.Mol.Biol., 356, 2006
2D60	Crystal structure of deoxy human hemoglobin complexed with two L35 molecules Descriptor: 2-[4-({[(3,5-DICHLOROPHENYL)AMINO]CARBONYL}AMINO)PHENOXY]-2-METHYLPROPANOIC ACID, Hemoglobin alpha subunit, Hemoglobin beta subunit, ... Authors: Yokoyama, T, Neya, S, Tsuneshige, A, Yonetani, T, Park, S.Y, Tame, J.R. Deposit date: 2005-11-08 Release date: 2006-03-07 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: R-state haemoglobin with low oxygen affinity: crystal structures of deoxy human and carbonmonoxy horse haemoglobin bound to the effector molecule L35 J.Mol.Biol., 356, 2006
2D61	Aspartate Aminotransferase Mutant MA With Maleic Acid Descriptor: Aspartate aminotransferase, MALEIC ACID, PYRIDOXAL-5'-PHOSPHATE Authors: Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. Deposit date: 2005-11-08 Release date: 2006-11-14 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (2.01 Å) Cite: The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
2D62	Crystal structure of multiple sugar binding transport ATP-binding protein Descriptor: PYROPHOSPHATE 2-, SULFATE ION, multiple sugar-binding transport ATP-binding protein Authors: Lokanath, N.K, Mizohata, E, Yamaguchi-Sihta, E, Chen, L, Liu, Z.J, Wang, B.C, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-11-08 Release date: 2006-05-08 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of multiple sugar binding transport ATP-binding protein To be Published
2D63	Aspartate Aminotransferase Mutant MA With Isovaleric Acid Descriptor: Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE Authors: Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. Deposit date: 2005-11-09 Release date: 2006-11-14 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (2.05 Å) Cite: The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
2D64	Aspartate Aminotransferase Mutant MABC With Isovaleric Acid Descriptor: Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE Authors: Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. Deposit date: 2005-11-09 Release date: 2006-11-14 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (2.05 Å) Cite: The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
2D65	Aspartate Aminotransferase Mutant MABC Descriptor: Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION Authors: Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. Deposit date: 2005-11-09 Release date: 2006-11-14 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
2D66	Aspartate Aminotransferase Mutant MAB Descriptor: Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION Authors: Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. Deposit date: 2005-11-09 Release date: 2006-11-14 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (2.18 Å) Cite: The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues To be Published
2D68	Structure of the N-terminal domain of FOP (FGFR1OP) protein Descriptor: FOP Authors: Mikolajka, A. Deposit date: 2005-11-10 Release date: 2006-05-16 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure of the N-terminal Domain of the FOP (FGFR1OP) Protein and Implications for its Dimerization and Centrosomal Localization. J.Mol.Biol., 359, 2006

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