PDB: 41454 resultsInfo pagesStatus searchChemie searchBIRD

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3PHY	PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN Authors: Dux, P, Rubinstenn, G, Vuister, G.W, Boelens, R, Mulder, F.A.A, Hard, K, Hoff, W.D, Kroon, A, Crielaard, W, Hellingwerf, K.J, Kaptein, R. Deposit date: 1998-02-06 Release date: 1998-05-27 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Solution structure and backbone dynamics of the photoactive yellow protein. Biochemistry, 37, 1998
1ZUM	Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, ALDH2*2, Apo Form Descriptor: 1,2-ETHANEDIOL, Aldehyde dehydrogenase, GUANIDINE, ... Authors: Larson, H.N, Weiner, H, Hurley, T.D. Deposit date: 2005-05-31 Release date: 2005-06-28 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Disruption of the coenzyme binding site and dimer interface revealed in the crystal structure of mitochondrial aldehyde dehydrogenase "asian" variant J.Biol.Chem., 280, 2005
2ZVD	Crystal structure of Pseudomonas sp. MIS38 lipase in an open conformation Descriptor: CALCIUM ION, Lipase Authors: Angkawidjaja, C, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. Deposit date: 2008-11-05 Release date: 2009-11-10 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.15 Å) Cite: X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids J.Mol.Biol., 2010
1L6M	Neutrophil Gelatinase-associated Lipocalin is a Novel Bacteriostatic Agent that Interferes with Siderophore-mediated Iron Acquisition Descriptor: 2,3-DIHYDROXY-BENZOIC ACID, 2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID, FE (III) ION, ... Authors: Goetz, D.H, Borregaard, N, Bluhm, M.E, Raymond, K.N, Strong, R.K. Deposit date: 2002-03-11 Release date: 2003-03-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The Neutrophil Lipocalin NGAL is a Bacteriostatic Agent that Interferes with Siderophore-mediated Iron Acquisition Mol.Cell, 10, 2002
2HII	heterotrimeric PCNA sliding clamp Descriptor: PCNA1 (SSO0397), PCNA2 (SSO1047), PCNA3 (SSO0405) Authors: Pascal, J.M, Tsodikov, O.V, Ellenberger, T. Deposit date: 2006-06-29 Release date: 2006-11-07 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (2.79 Å) Cite: A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
2HIK	heterotrimeric PCNA sliding clamp Descriptor: PCNA1 (SSO0397), PCNA2 (SSO1047), PCNA3 (SSO0405) Authors: Pascal, J.M, Tsodikov, O.V, Ellenberger, T. Deposit date: 2006-06-29 Release date: 2006-11-07 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.3 Å) Cite: A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
1UWP	Initial Events in the Photocycle of Photoactive Yellow Protein Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN, SULFATE ION Authors: Kort, R, Hellingwerf, K.J, Ravelli, R.B.G. Deposit date: 2004-02-11 Release date: 2006-05-10 Last modified: 2019-02-27 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Initial events in the photocycle of photoactive yellow protein. J. Biol. Chem., 279, 2004
1SI3	Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex Descriptor: 5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3', Eukaryotic translation initiation factor 2C 1 Authors: Ye, K, Ma, J.B, Patel, D. Deposit date: 2004-02-27 Release date: 2004-05-25 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature, 429, 2004
5D8A	Crystal structure of recombinant foot-and-mouth-disease virus A22-H2093F empty capsid Descriptor: VP1, VP2, VP3, ... Authors: Kotecha, A, Seago, J, Scott, K, Burman, A, Loureiro, S, Ren, J, Porta, C, Ginn, H.M, Jackson, T, Perez-Martin, E, Siebert, C.A, Paul, G, Huiskonen, J.T, Jones, I.M, Esnouf, R.M, Fry, E.E, Maree, F.F, Charleston, B, Stuart, D.I. Deposit date: 2015-08-16 Release date: 2015-09-23 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure-based energetics of protein interfaces guides foot-and-mouth disease virus vaccine design. Nat.Struct.Mol.Biol., 22, 2015
5DDJ	Crystal structure of recombinant foot-and-mouth-disease virus O1M-S2093Y empty capsid Descriptor: Foot and mouth disease virus, VP1, VP2, ... Authors: Kotecha, A, Seago, J, Scott, K, Burman, A, Loureiro, S, Ren, J, Porta, C, Ginn, H.M, Jackson, T, Perez-Martin, E, Siebert, C.A, Paul, G, Huiskonen, J.T, Jones, I.M, Esnouf, R.M, Fry, E.E, Maree, F.F, Charleston, B, Stuart, D.I. Deposit date: 2015-08-25 Release date: 2015-09-23 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structure-based energetics of protein interfaces guides foot-and-mouth disease virus vaccine design. Nat.Struct.Mol.Biol., 22, 2015
3RAP	The small G protein Rap2 in a non catalytic complex with GTP Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PROTEIN (G protein RAP2A) Authors: Menetrey, J, Cherfils, J. Deposit date: 1999-05-31 Release date: 1999-12-08 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of the small G protein Rap2 in a non-catalytic complex with GTP. Proteins, 37, 1999
2KIV	AIDA-1 SAM domain tandem Descriptor: Ankyrin repeat and sterile alpha motif domain-containing protein 1B Authors: Donaldson, L.W, Kurabi, A. Deposit date: 2009-05-12 Release date: 2009-08-25 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: A nuclear localization signal at the SAM-SAM domain interface of AIDA-1 suggests a requirement for domain uncoupling prior to nuclear import. J.Mol.Biol., 392, 2009
4NI6	Repeat domain 1 of Clostridium perfringens CPE0147 Descriptor: Putative surface anchored protein Authors: Kwon, H, Squire, C.J, Young, P.G, Baker, E.N. Deposit date: 2013-11-05 Release date: 2013-12-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Autocatalytically generated Thr-Gln ester bond cross-links stabilize the repetitive Ig-domain shaft of a bacterial cell surface adhesin. Proc.Natl.Acad.Sci.USA, 111, 2014
1LO1	ESTROGEN RELATED RECEPTOR 2 DNA BINDING DOMAIN IN COMPLEX WITH DNA Descriptor: 5'-D(*CP*GP*TP*GP*AP*CP*CP*TP*TP*GP*AP*GP*C)-3', 5'-D(*GP*CP*TP*CP*AP*AP*GP*GP*TP*CP*AP*CP*G)-3', Steroid hormone receptor ERR2, ... Authors: Gearhart, M.D, Holmbeck, S.M.A, Evans, R.M, Dyson, H.J, Wright, P.E. Deposit date: 2002-05-05 Release date: 2003-04-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Monomeric Complex of Human Orphan Estrogen Related Receptor-2 with DNA: A Pseudo-dimer Interface Mediates Extended Half-site Recognition J.Mol.Biol., 327, 2003
2HIV	ATP-dependent DNA ligase from S. solfataricus Descriptor: Thermostable DNA ligase Authors: Pascal, J.M, Ellenberger, T. Deposit date: 2006-06-29 Release date: 2006-11-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.05 Å) Cite: A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
2HIX	ATP dependent DNA ligase from S. solfataricus bound to ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Thermostable DNA ligase Authors: Pascal, J.M, Ellenberger, T. Deposit date: 2006-06-29 Release date: 2006-11-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.87 Å) Cite: A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
1MHH	Structure of P. magnus protein L mutant bound to a mouse Fab Descriptor: 1,2-ETHANEDIOL, Fab, heavy chain, ... Authors: Graille, M, Stura, E.A. Deposit date: 2002-08-20 Release date: 2003-01-14 Last modified: 2018-01-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Evidence for plasticity and structural mimicry at the immunoglobulin light chain-protein L interface J.Biol.Chem., 277, 2002
2JU1	Solution structure of acyl carrier protein domain from module 2 of 6-deoxyerythronolide B synthase (DEBS) Descriptor: Erythronolide synthase Authors: Alekseyev, V.Y, Liu, C.W, Puglisi, J.D, Khosla, C. Deposit date: 2007-08-12 Release date: 2007-10-02 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure and proposed domain domain recognition interface of an acyl carrier protein domain from a modular polyketide synthase. Protein Sci., 16, 2007
4OX8	Structure of Prochlorococcus marinus str. MIT 9313 CsoS1 Descriptor: Carbon dioxide-concentrating mechanism protein CcmK Authors: Sutter, M, Kinney, J.N, Cai, F, Kerfeld, C.A. Deposit date: 2014-02-04 Release date: 2014-08-27 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.9031 Å) Cite: Engineering Bacterial Microcompartment Shells: Chimeric Shell Proteins and Chimeric Carboxysome Shells. Acs Synth Biol, 2014
2L55	Solution structure of the C-terminal domain of SilB from Cupriavidus metallidurans Descriptor: SilB,Silver efflux protein, MFP component of the three components proton antiporter metal efflux system Authors: Bersch, B, Derfoufi, K, Vandenbussche, G. Deposit date: 2010-10-25 Release date: 2011-02-23 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural and Metal Binding Characterization of the C-Terminal Metallochaperone Domain of Membrane Fusion Protein SilB from Cupriavidus metallidurans CH34. Biochemistry, 50, 2011
2LA2	Solution structure of papiliocin isolated from the swallowtail butterfly, Papilio xuthus Descriptor: Cecropin Authors: Kim, Y, Kim, J. Deposit date: 2011-03-01 Release date: 2011-09-28 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structure and function of papiliocin with antimicrobial and anti-inflammatory activities isolated from the swallowtail butterfly, Papilio xuthus To be Published
2MN5	NMR structure of Copsin Descriptor: Copsin Authors: Hofmann, D, Wider, G, Essig, A, Aebi, M. Deposit date: 2014-03-28 Release date: 2014-10-29 Last modified: 2019-12-25 Method: SOLUTION NMR Cite: Copsin, a Novel Peptide-based Fungal Antibiotic Interfering with the Peptidoglycan Synthesis. J.Biol.Chem., 289, 2014
5XNG	EFK17A structure in Microgel MAA60 Descriptor: Cathelicidin antimicrobial peptide Authors: Datta, A, Bhunia, A. Deposit date: 2017-05-22 Release date: 2018-04-18 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Conformational Aspects of High Content Packing of Antimicrobial Peptides in Polymer Microgels ACS Appl Mater Interfaces, 9, 2017
2BYP	Crystal structure of Aplysia californica AChBP in complex with alpha- conotoxin ImI Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ALPHA-CONOTOXIN IMI, SOLUBLE ACETYLCHOLINE RECEPTOR Authors: Hansen, S.B, Sulzenbacher, G, Huxford, T, Marchot, P, Taylor, P, Bourne, Y. Deposit date: 2005-08-03 Release date: 2005-10-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Structures of Aplysia Achbp Complexes with Nicotinic Agonists and Antagonists Reveal Distinctive Binding Interfaces and Conformations. Embo J., 24, 2005
2JTI	Solution structure of the yeast iso-1-cytochrome c (T12A) : yeast cytochrome c peroxidase complex Descriptor: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ... Authors: Ubbink, M, Volkov, A.N. Deposit date: 2007-08-01 Release date: 2008-07-22 Last modified: 2021-10-20 Method: SOLUTION NMR Cite: Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations. J.Am.Chem.Soc., 132, 2010

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