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PDB: 137 results

6OFR
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BU of 6ofr by Molmil
The crystal structure of the outer membrane transporter YddB from Escherichia coli
Descriptor: GLYCEROL, MAGNESIUM ION, TonB-dependent outer membrane receptor, ...
Authors:Grinter, R.
Deposit date:2019-04-01
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Protease-associated import systems are widespread in Gram-negative bacteria.
Plos Genet., 15, 2019
4ZGV
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BU of 4zgv by Molmil
The Crystal Structure of the Ferredoxin Receptor FusA from Pectobacterium atrosepticum SCRI1043
Descriptor: Ferredoxin receptor, LAURYL DIMETHYLAMINE-N-OXIDE, octyl beta-D-glucopyranoside
Authors:Grinter, R, Josts, I, Roszak, A.W, Cogdell, R.J, Walker, D.
Deposit date:2015-04-24
Release date:2016-08-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of the bacterial plant-ferredoxin receptor FusA.
Nat Commun, 7, 2016
8P98
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BU of 8p98 by Molmil
BtuB3G3 bound to cyanocobalamin with ordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, Vitamin B12 transporter BtuB
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P97
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BU of 8p97 by Molmil
BtuB3G3 bound to cyanocobalamin with disordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
5FQ8
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BU of 5fq8 by Molmil
Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 3-decanoyloxypropyl decanoate, BT_2262 (UNCHARACTERISED LIPOPROTEIN), ...
Authors:Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B.
Deposit date:2015-12-07
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
5FQ7
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BU of 5fq7 by Molmil
Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron
Descriptor: BT_2261, BT_2262, BT_2263, ...
Authors:Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B.
Deposit date:2015-12-07
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
5FQ6
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BU of 5fq6 by Molmil
Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron
Descriptor: 3-decanoyloxypropyl decanoate, BT_2261, CALCIUM ION, ...
Authors:Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B.
Deposit date:2015-12-07
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
8AA4
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BU of 8aa4 by Molmil
SusC components of the dextran utilisation system (utilisome)
Descriptor: SusC homolog
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
9C4O
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BU of 9c4o by Molmil
Cryo-EM structure of PqqU with ligand PQQ
Descriptor: CALCIUM ION, PYRROLOQUINOLINE QUINONE, Pyrroloquinoline quinone transporter
Authors:Munder, F, Venugopal, H, Grinter, R.
Deposit date:2024-06-04
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (1.99 Å)
Cite:High-affinity PQQ import is widespread in Gram-negative bacteria.
To Be Published
6E4V
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BU of 6e4v by Molmil
The Crystal Structure of FhuE from E. coli in complex with its substrate Coprogen
Descriptor: COPROGEN, FhuE receptor, octyl beta-D-glucopyranoside
Authors:Grinter, R, Lithgow, T.
Deposit date:2018-07-18
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Determination of the molecular basis for coprogen import by Gram-negative bacteria.
Iucrj, 6, 2019
4EPA
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BU of 4epa by Molmil
The crystal structure of the ferric yersiniabactin uptake receptor FyuA from Yersinia pestis
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Pesticin receptor
Authors:Lukacik, P, Barnard, T.J, Buchanan, S.K.
Deposit date:2012-04-17
Release date:2012-06-20
Last modified:2012-07-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural engineering of a phage lysin that targets Gram-negative pathogens.
Proc.Natl.Acad.Sci.USA, 109, 2012
5C58
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BU of 5c58 by Molmil
A double mutant of serratia marcescens hemophore receptor HasR in complex with its hemophore HasA and heme
Descriptor: HasR protein, Hemophore HasA, PROTOPORPHYRIN IX CONTAINING FE
Authors:Becker, S, Diederichs, K, Welte, W.
Deposit date:2015-06-19
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.795 Å)
Cite:Binding of HasA by its transmembrane receptor HasR follows a conformational funnel mechanism.
Eur.Biophys.J., 49, 2020
5OUT
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BU of 5out by Molmil
CRYSTAL STRUCTURE OF THE FERRIC ENTEROBACTIN RECEPTOR (PFEA) MUTANT (G324V) FROM PSEUDOMONAS AERUGINOSA
Descriptor: Ferric enterobactin receptor
Authors:Moynie, L, Naismith, J.H.
Deposit date:2017-08-24
Release date:2018-09-05
Last modified:2019-08-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The complex of ferric-enterobactin with its transporter from Pseudomonas aeruginosa suggests a two-site model.
Nat Commun, 10, 2019
1UJW
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BU of 1ujw by Molmil
Structure of the complex between BtuB and Colicin E3 Receptor binding domain
Descriptor: 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, 3-OXO-PENTADECANOIC ACID, ACETOACETIC ACID, ...
Authors:Kurisu, G, Zakharov, S.D, Zhalnina, M.V, Bano, S, Eroukova, V.Y, Rokitskaya, T.I, Antonenko, Y.N, Wiener, M.C, Cramer, W.A.
Deposit date:2003-08-12
Release date:2003-11-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The structure of BtuB with bound colicin E3 R-domain implies a translocon
NAT.STRUCT.BIOL., 10, 2003
6V81
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BU of 6v81 by Molmil
The crystal structure of the outer-membrane transporter YncD
Descriptor: CALCIUM ION, Probable TonB-dependent receptor YncD, octyl beta-D-glucopyranoside
Authors:Grinter, R.
Deposit date:2019-12-10
Release date:2020-05-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.957 Å)
Cite:The crystal structure of the TonB-dependent transporter YncD reveals a positively charged substrate-binding site.
Acta Crystallogr D Struct Biol, 76, 2020
6ZLT
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BU of 6zlt by Molmil
Open-open state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
8THE
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BU of 8the by Molmil
Cryo-EM structure of Pseudomonas aeruginosa TonB-dependent transporter PhuR in complex with synthetic antibody and heme
Descriptor: (2~{R},4~{R},5~{S},6~{S})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[[(2~{R},3~{S},4~{S},5~{R},6~{S})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{R},4~{R},5~{S},6~{S})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{S})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]-4,5-bis(oxidanyl)oxane-2-carboxylic acid, Heme/hemoglobin uptake outer membrane receptor PhuR, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Knejski, P, Erramilli, S.K, Kossiakoff, A.A.
Deposit date:2023-07-15
Release date:2024-01-31
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Chaperone-assisted cryo-EM structure of P. aeruginosa PhuR reveals molecular basis for heme binding.
Structure, 32, 2024
3FHH
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BU of 3fhh by Molmil
Crystal structure of the heme/hemoglobin outer membrane transporter ShuA from Shigella dysenteriae
Descriptor: LEAD (II) ION, Outer membrane heme receptor ShuA, octyl beta-D-glucopyranoside
Authors:Brillet, K, Cobessi, D.
Deposit date:2008-12-09
Release date:2009-07-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the heme/hemoglobin outer membrane receptor ShuA from Shigella dysenteriae: heme binding by an induced fit mechanism.
Proteins, 78, 2010
4RDR
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BU of 4rdr by Molmil
Structure of the bacterial Zn-transporter ZnuD from Neisseria meningitidis (locked conformation bound to zinc and cadmium ions)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,2-ETHANEDIOL, CADMIUM ION, ...
Authors:Calmettes, C, Moraes, T.F.
Deposit date:2014-09-19
Release date:2015-08-19
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:The molecular mechanism of Zinc acquisition by the neisserial outer-membrane transporter ZnuD.
Nat Commun, 6, 2015
2O5P
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BU of 2o5p by Molmil
Crystal structure of the full length ferric pyoverdine outer membrane receptor FpvA of Pseudomonas aeruginosa in its apo form
Descriptor: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL, Ferripyoverdine receptor, PHOSPHATE ION
Authors:Cobessi, D.
Deposit date:2006-12-06
Release date:2007-10-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:A beta strand lock exchange for signal transduction in TonB-dependent transducers on the basis of a common structural motif.
Structure, 15, 2007
1KMO
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BU of 1kmo by Molmil
Crystal structure of the Outer Membrane Transporter FecA
Descriptor: HEPTANE-1,2,3-TRIOL, Iron(III) dicitrate transport protein fecA, LAURYL DIMETHYLAMINE-N-OXIDE
Authors:Ferguson, A.D, Chakraborty, R, Smith, B.S, Esser, L, van der Helm, D, Deisenhofer, J.
Deposit date:2001-12-17
Release date:2002-03-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of gating by the outer membrane transporter FecA.
Science, 295, 2002
1KMP
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BU of 1kmp by Molmil
Crystal structure of the Outer Membrane Transporter FecA Complexed with Ferric Citrate
Descriptor: CITRIC ACID, FE (III) ION, IRON(III) DICITRATE TRANSPORT PROTEIN FECA, ...
Authors:Ferguson, A.D, Chakraborty, R, Smith, B.S, Esser, L, van der Helm, D, Deisenhofer, J.
Deposit date:2001-12-17
Release date:2002-03-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of gating by the outer membrane transporter FecA.
Science, 295, 2002
4RDT
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BU of 4rdt by Molmil
Structure of the bacterial Zn-transporter ZnuD from Neisseria meningitidis (flexible conformation bound to a zinc ion)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, GLYCEROL, SULFATE ION, ...
Authors:Calmettes, C, El Bakkouri, M, Moraes, T.F.
Deposit date:2014-09-19
Release date:2015-08-19
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The molecular mechanism of Zinc acquisition by the neisserial outer-membrane transporter ZnuD.
Nat Commun, 6, 2015
4RVW
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BU of 4rvw by Molmil
Structure of the bacterial Zn-transporter ZnuD from Neisseria meningitidis (soaked with 20 micromolar Zinc)
Descriptor: SULFATE ION, ZINC ION, ZnuD
Authors:Calmettes, C, Moraes, T.F.
Deposit date:2014-11-28
Release date:2015-08-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.477 Å)
Cite:The molecular mechanism of Zinc acquisition by the neisserial outer-membrane transporter ZnuD.
Nat Commun, 6, 2015
7OBW
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BU of 7obw by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) from Pseudomonas aeruginosa in complex with TCV-L6
Descriptor: FE (III) ION, Ferric enterobactin receptor, [4-[[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-[2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]ethanoylamino]propanoyl]amino]propanoyl]amino]methyl]-1,2,3-triazol-1-yl]methyl 4-[4-[(5~{S})-5-(acetamidomethyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]-2-fluoranyl-phenyl]piperazine-1-carboxylate
Authors:Moynie, L, Naismith, J.H.
Deposit date:2021-04-23
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa .
Acs Infect Dis., 8, 2022

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数据于2024-08-28公开中

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