1IFY
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1F4I
| SOLUTION STRUCTURE OF THE HHR23A UBA(2) MUTANT P333E, DEFICIENT IN BINDING THE HIV-1 ACCESSORY PROTEIN VPR | Descriptor: | UV EXCISION REPAIR PROTEIN PROTEIN RAD23 HOMOLOG A | Authors: | Withers-Ward, E.S, Mueller, T.D, Chen, I.S, Feigon, J. | Deposit date: | 2000-06-07 | Release date: | 2000-12-20 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Biochemical and structural analysis of the interaction between the UBA(2) domain of the DNA repair protein HHR23A and HIV-1 Vpr. Biochemistry, 39, 2000
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7TGP
| E176T/Y188G variant of the internal UBA Domain of HHR23A | Descriptor: | UV excision repair protein RAD23 homolog A | Authors: | Rothfuss, M, Bowler, B.E, McClelland, L.J, Sprang, S.R. | Deposit date: | 2022-01-08 | Release date: | 2023-04-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST. J.Am.Chem.Soc., 145, 2023
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1DV0
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1VG5
| Solution Structure of RSGI RUH-014, a UBA domain from Arabidopsis cDNA | Descriptor: | rhomboid family protein | Authors: | Onuki, H, Doi-Katayama, Y, Hayashi, F, Hirota, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-04-23 | Release date: | 2004-10-23 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution Structure of RSGI RUH-014, a UBA domain from Arabidopsis thaliana cDNA To be Published
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1VEG
| Solution Structure of RSGI RUH-012, a UBA Domain from Mouse cDNA | Descriptor: | NEDD8 ultimate buster-1 | Authors: | Abe, T, Hirota, H, Izumi, K, Yoshida, M, Yamazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-03-31 | Release date: | 2004-09-30 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution Structure of RSGI RUH-012, a UBA Domain from Mouse cDNA To be Published
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1VEJ
| Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA | Descriptor: | RIKEN cDNA 4931431F19 | Authors: | Higuchi, Y, Abe, T, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-03-31 | Release date: | 2005-05-31 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA To be Published
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6W2G
| Crystal Structure of Y188G Variant of the Internal UBA Domain of HHR23A in Monoclinic Unit Cell | Descriptor: | 1,2-ETHANEDIOL, UV excision repair protein RAD23 homolog A | Authors: | Bowler, B.E, Zeng, B, Becht, D.C, Rothfuss, M, Sprang, S.R, Mou, T.-C. | Deposit date: | 2020-03-05 | Release date: | 2021-03-10 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST. J.Am.Chem.Soc., 145, 2023
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6W2H
| Crystal Structure of the Internal UBA Domain of HHR23A | Descriptor: | SULFATE ION, UV excision repair protein RAD23 homolog A | Authors: | Bowler, B.E, Zeng, B, Becht, D.C, Rothfuss, M, Sprang, S.R, Mou, T.-C. | Deposit date: | 2020-03-05 | Release date: | 2021-03-10 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Residual Structure in the Denatured State of the Fast-Folding UBA(1) Domain from the Human DNA Excision Repair Protein HHR23A. Biochemistry, 61, 2022
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6W2I
| Crystal Structure of Y188G Variant of the Internal UBA Domain of HHR23A | Descriptor: | GLYCEROL, UV excision repair protein RAD23 homolog A | Authors: | Bowler, B.E, Zeng, B, Becht, D.C, Rothfuss, M, Sprang, S.R, Mou, T.-C. | Deposit date: | 2020-03-05 | Release date: | 2021-03-10 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST. J.Am.Chem.Soc., 145, 2023
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2JUJ
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2JY5
| NMR structure of Ubiquilin 1 UBA domain | Descriptor: | Ubiquilin-1 | Authors: | Zhang, D, Raasi, S, Fushman, D. | Deposit date: | 2007-12-06 | Release date: | 2008-03-18 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains J.Mol.Biol., 377, 2008
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2LBC
| solution structure of tandem UBA of USP13 | Descriptor: | Ubiquitin carboxyl-terminal hydrolase 13 | Authors: | Zhang, Y, Zhou, C, Zhou, Z, Song, A, Hu, H. | Deposit date: | 2011-03-29 | Release date: | 2012-03-07 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Domain Analysis Reveals That a Deubiquitinating Enzyme USP13 Performs Non-Activating Catalysis for Lys63-Linked Polyubiquitin. Plos One, 6, 2011
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2KNZ
| NMR structure of CIP75 UBA domain | Descriptor: | Ubiquilin-4 | Authors: | Kieken, F, Spagnol, G, Su, V, Lau, A.F, Sorgen, P.L. | Deposit date: | 2009-09-08 | Release date: | 2010-03-16 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | NMR structure note: UBA domain of CIP75. J.Biomol.Nmr, 46, 2010
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2DAG
| Solution Structure of the First UBA Domain in the Human Ubiquitin Specific Protease 5 (Isopeptidase 5) | Descriptor: | Ubiquitin carboxyl-terminal hydrolase 5 | Authors: | Zhao, C, Kigawa, T, Tomizawa, T, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-12-14 | Release date: | 2006-06-14 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution Structure of the First UBA Domain in the Human Ubiquitin Specific Protease 5 (Isopeptidase 5) To be Published
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2D9S
| Solution structure of RSGI RUH-049, a UBA domain from mouse cDNA | Descriptor: | CBL E3 ubiquitin protein ligase | Authors: | Hamada, T, Hirota, H, Lin, Y.-J, Guntert, P, Kurosaki, C, Izumi, K, Yoshida, M, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-12-13 | Release date: | 2007-01-23 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of RSGI RUH-049, a UBA domain from mouse cDNA To be Published
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2DAH
| Solution Structure of the C-terminal UBA Domain in the Human Ubiquilin 3 | Descriptor: | Ubiquilin-3 | Authors: | Zhao, C, Kigawa, T, Sato, M, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-12-14 | Release date: | 2006-06-14 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution Structure of the C-terminal UBA Domain in the Human Ubiquilin 3 To be Published
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2DAK
| Solution Structure of the Second UBA Domain in the Human Ubiquitin Specific Protease 5 (Isopeptidase 5) | Descriptor: | Ubiquitin carboxyl-terminal hydrolase 5 | Authors: | Zhao, C, Kigawa, T, Sato, M, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-12-14 | Release date: | 2006-06-14 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution Structure of the Second UBA Domain in the Human Ubiquitin Specific Protease 5 (Isopeptidase 5) To be Published
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1Z96
| Crystal structure of the Mud1 UBA domain | Descriptor: | UBA-domain protein mud1 | Authors: | Trempe, J.-F, Brown, N.R, Lowe, E.D, Noble, M.E.M, Gordon, C, Campbell, I.D, Johnson, L.N, Endicott, J.A. | Deposit date: | 2005-03-31 | Release date: | 2005-10-04 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Mechanism of Lys48-linked polyubiquitin chain recognition by the Mud1 UBA domain Embo J., 24, 2005
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2MR9
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2OO9
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4YIR
| Crystal structure of Rad4-Rad23 crosslinked to an undamaged DNA | Descriptor: | DNA (5'-D(*AP*TP*TP*GP*TP*AP*GP*CP*G*GP*GP*GP*AP*TP*GP*TP*CP*GP*AP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*(G47)P*AP*CP*AP*TP*CP*CP*CP*CP*CP*GP*CP*TP*AP*CP*AP*A)-3'), DNA repair protein RAD4, ... | Authors: | Min, J.-H, Chen, X, Kim, Y. | Deposit date: | 2015-03-02 | Release date: | 2015-03-11 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (3.0501 Å) | Cite: | Kinetic gating mechanism of DNA damage recognition by Rad4/XPC. Nat Commun, 6, 2015
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6UIN
| Role of Beta-hairpin motifs in the DNA duplex opening by the Rad4/XPC nucleotide excision repair complex | Descriptor: | DNA (5'-D(*AP*TP*TP*GP*TP*AP*GP*NP*NP*NP*NP*GP*GP*AP*TP*GP*TP*CP*GP*AP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*(G47)P*AP*CP*AP*TP*CP*CP*CP*CP*CP*CP*CP*TP*AP*CP*AP*A)-3'), DNA repair protein RAD4, ... | Authors: | Paul, D, Min, J.-H. | Deposit date: | 2019-10-01 | Release date: | 2020-10-14 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (3.348 Å) | Cite: | Tethering-facilitated DNA 'opening' and complementary roles of beta-hairpin motifs in the Rad4/XPC DNA damage sensor protein Nucleic Acids Res., 48, 2021
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6UBF
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6CFI
| Crystal structure of Rad4-Rad23 bound to a 6-4 photoproduct UV lesion | Descriptor: | DNA (5'-D(*AP*TP*TP*GP*TP*AP*GP*CP*(T64)P*TP*GP*GP*AP*TP*GP*TP*TP*GP*AP*GP*TP*CP*A)-3'), DNA repair protein RAD4, DNA('-D(*TP*TP*GP*AP*CP*TP*CP*AP*AP*CP*AP*TP*CP*CP*AP*AP*AP*GP*CP*TP*AP*CP*AP*A)-'), ... | Authors: | Min, J, Jeffrey, P.D. | Deposit date: | 2018-02-15 | Release date: | 2019-02-27 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.36241913 Å) | Cite: | Structure and mechanism of pyrimidine-pyrimidone (6-4) photoproduct recognition by the Rad4/XPC nucleotide excision repair complex. Nucleic Acids Res., 47, 2019
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