Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 545 results

2O29
DownloadVisualize
BU of 2o29 by Molmil
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-BR Complex
Descriptor: BROMIDE ION, Green fluorescent protein
Authors:Garau, G.
Deposit date:2006-11-29
Release date:2007-05-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spectroscopic and Structural Study of Proton and Halide Ion Cooperative Binding to GFP.
Biophys.J., 93, 2007
1JBY
DownloadVisualize
BU of 1jby by Molmil
CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT LOW PH
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Hanson, G.T, McAnaney, T.B, Park, E.S, Rendell, M.E.P, Yarbrough, D.K, Chu, S, Xi, L, Boxer, S.G, Montrose, M.H, Remington, S.J.
Deposit date:2001-06-07
Release date:2003-01-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Green Fluorescent Protein Variants as Ratiometric Dual Emission pH Sensors. 1. Structural Characterization and Preliminary Application.
Biochemistry, 41, 2002
4IK9
DownloadVisualize
BU of 4ik9 by Molmil
High resolution structure of GCaMP3 dimer form 2 at pH 7.5
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, RCaMP, ...
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-01-29
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
8DTA
DownloadVisualize
BU of 8dta by Molmil
Metal sensitive GFP (mseGFP) complexed with phenylarsine oxide.
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Green fluorescent protein, ...
Authors:Rosenbaum, J.C, Carlson, A.E.
Deposit date:2022-07-25
Release date:2023-07-05
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Glutathione modulates metal binding to proteins.
TBD
8A83
DownloadVisualize
BU of 8a83 by Molmil
rsEGFP2 with a chlorinated chromophore in the fluorescent ON-state in a crystal dehydrated after illumination
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Fadini, A, van Thor, J, Chang, J.
Deposit date:2022-06-21
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism.
J.Am.Chem.Soc., 145, 2023
6QQ9
DownloadVisualize
BU of 6qq9 by Molmil
Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 5.8 MGy
Descriptor: CARBON DIOXIDE, Green fluorescent protein
Authors:Gotthard, G, Aumonier, S, Royant, A.
Deposit date:2019-02-18
Release date:2019-06-19
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Specific radiation damage is a lesser concern at room temperature.
Iucrj, 6, 2019
2H9W
DownloadVisualize
BU of 2h9w by Molmil
Green fluorescent protein ground states: the influence of a second protonation site near the chromophore
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Garau, G.
Deposit date:2006-06-12
Release date:2007-04-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Green Fluorescent Protein Ground States: The Influence of a Second Protonation Site near the Chromophore.
Biochemistry, 46, 2007
4ZF4
DownloadVisualize
BU of 4zf4 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51)
Descriptor: Green fluorescent protein
Authors:Oltrogge, L.M, Boxer, S.G.
Deposit date:2015-04-21
Release date:2015-06-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.823 Å)
Cite:Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP).
Acs Cent.Sci., 1, 2015
8SFV
DownloadVisualize
BU of 8sfv by Molmil
High affinity nanobodies to GFP
Descriptor: GLYCEROL, Green fluorescent protein, LaG19, ...
Authors:Ketaren, N.E, Rout, M.P, Bonanno, J.B, Almo, S.C.
Deposit date:2023-04-11
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:High affinity nanobodies to GFP
To Be Published
2AWL
DownloadVisualize
BU of 2awl by Molmil
Mature R96K GFP mutant
Descriptor: MAGNESIUM ION, green fluorescent protein
Authors:Wood, T.I, Barondeau, D.P, Hitomi, C, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2005-09-01
Release date:2006-04-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis.
Biochemistry, 44, 2005
5MA5
DownloadVisualize
BU of 5ma5 by Molmil
GFP-binding DARPin fusion gc_K11
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Green fluorescent protein, ...
Authors:Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A.
Deposit date:2016-11-03
Release date:2017-11-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
1W7T
DownloadVisualize
BU of 1w7t by Molmil
Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein at 100 K
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Van Thor, J.J, Georgiev, G.Y, Towrie, M, Sage, J.T.
Deposit date:2004-09-09
Release date:2005-07-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ultrafast and Low Barrier Motions in the Photoreactions of the Green Fluorescent Protein
J.Biol.Chem., 280, 2005
1W7S
DownloadVisualize
BU of 1w7s by Molmil
Wild-Type Aequorea victoria Green Fluorescent Protein
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Van Thor, J.J, Georgiev, G.Y, Towrie, M, Sage, J.T.
Deposit date:2004-09-09
Release date:2005-07-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ultrafast and Low Barrier Motions in the Photoreactions of the Green Fluorescent Protein
J.Biol.Chem., 280, 2005
3EK7
DownloadVisualize
BU of 3ek7 by Molmil
Calcium-saturated GCaMP2 dimer
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Akerboom, J, Velez Rivera, J.D, Looger, L.L, Schreiter, E.R.
Deposit date:2008-09-18
Release date:2008-12-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design
J.Biol.Chem., 284, 2009
1W7U
DownloadVisualize
BU of 1w7u by Molmil
Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein after structural annealing at 170K
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Van Thor, J.J, Georgiev, G.Y, Towrie, M, Sage, J.T.
Deposit date:2004-09-09
Release date:2005-07-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ultrafast and Low Barrier Motions in the Photoreactions of the Green Fluorescent Protein
J.Biol.Chem., 280, 2005
7VCM
DownloadVisualize
BU of 7vcm by Molmil
crystal structure of GINKO1
Descriptor: Green fluorescent protein,Potassium binding protein Kbp,Green fluorescent protein, POTASSIUM ION
Authors:Wen, Y, Campbell, R.E, Lemieux, M.J.
Deposit date:2021-09-03
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A sensitive and specific genetically-encoded potassium ion biosensor for in vivo applications across the tree of life.
Plos Biol., 20, 2022
3UFZ
DownloadVisualize
BU of 3ufz by Molmil
Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code
Descriptor: Green fluorescent protein
Authors:Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
Deposit date:2011-11-02
Release date:2012-10-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
6T3A
DownloadVisualize
BU of 6t3a by Molmil
Difference-refined structure of rsEGFP2 10 ns following 400-nm laser irradiation of the off-state determined by SFX
Descriptor: Green fluorescent protein
Authors:Woodhouse, J, Coquelle, N, Adam, V, Barends, T.R.M, De La Mora, E, Bourgeois, D, Colletier, J.P, Schlichting, I, Weik, M.
Deposit date:2019-10-10
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy.
Nat Commun, 11, 2020
5DPG
DownloadVisualize
BU of 5dpg by Molmil
sfGFP mutant - 133 p-cyano-L-phenylalanine
Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, SODIUM ION
Authors:Dippel, A.B, Olenginski, G.M, Maurici, N, Liskov, M.T, Brewer, S.H, Phillips-Piro, C.M.
Deposit date:2015-09-12
Release date:2016-01-13
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Probing the effectiveness of spectroscopic reporter unnatural amino acids: a structural study.
Acta Crystallogr D Struct Biol, 72, 2016
3SSV
DownloadVisualize
BU of 3ssv by Molmil
Engineered low-affinity halide-binding protein derived from YFP: fluoride complex
Descriptor: FLUORIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.861 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
5HGE
DownloadVisualize
BU of 5hge by Molmil
Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P212121
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Green fluorescent protein
Authors:Sawaya, M.R, Heller, D.M, McPartland, L, Hochschild, A, Eisenberg, D.S.
Deposit date:2016-01-08
Release date:2017-01-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.863 Å)
Cite:Green Fluorescent Protein Fusion that Self Assembles as Polar Filaments
to be published
5Z6Y
DownloadVisualize
BU of 5z6y by Molmil
Structure of sfYFP48S95C66BPA
Descriptor: Green fluorescent protein
Authors:Wang, J.Y, Wang, J.Y.
Deposit date:2018-01-25
Release date:2019-06-12
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:structure of sfYFP48S95C66BPA at 1.95 Angstroms resolution
To Be Published
8C1X
DownloadVisualize
BU of 8c1x by Molmil
sfGFP C148 F206 mutant
Descriptor: Green fluorescent protein
Authors:Ahmed, R.D, Rizkallah, P.J, Jones, D.D.
Deposit date:2022-12-21
Release date:2024-01-10
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:sfGFP C148 F206 mutant
To Be Published
5FGU
DownloadVisualize
BU of 5fgu by Molmil
Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Green fluorescent protein,Extracellular streptodornase D, ...
Authors:Moon, A.F, Krahn, J.M, Xun, L, Cuneo, M.J, Pedersen, L.C.
Deposit date:2015-12-21
Release date:2016-03-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.896 Å)
Cite:Structural characterization of the virulence factor Sda1 nuclease from Streptococcus pyogenes.
Nucleic Acids Res., 44, 2016
3OSQ
DownloadVisualize
BU of 3osq by Molmil
Maltose-bound maltose sensor engineered by insertion of circularly permuted green fluorescent protein into E. coli maltose binding protein at position 175
Descriptor: Maltose-binding periplasmic protein,Green fluorescent protein, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Echevarria, I.M, Marvin, J.S, Looger, L.L, Schreiter, E.R.
Deposit date:2010-09-09
Release date:2011-10-26
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A genetically encoded, high-signal-to-noise maltose sensor.
Proteins, 79, 2011

223166

数据于2024-07-31公开中

PDB statisticsPDBj update infoContact PDBjnumon