6KMN
| Crystal Structure of Dye Decolorizing peroxidase from Bacillus subtilis | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Deferrochelatase/peroxidase EfeB, ... | Authors: | Dhankhar, P, Dalal, V, Mahto, J.K, Kumar, P. | Deposit date: | 2019-07-31 | Release date: | 2020-10-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.44 Å) | Cite: | Characterization of dye-decolorizing peroxidase from Bacillus subtilis. Arch.Biochem.Biophys., 693, 2020
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7YLO
| Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation | Descriptor: | Dyp-type peroxidase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Cheng, J, Luo, Y, Zhu, J, Tan, R, Wang, N, Lebedev, A.A. | Deposit date: | 2022-07-26 | Release date: | 2023-07-05 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria
Metabolic network of tryptophan around the indole-3-aldehyde formation To Be Published
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7ZMJ
| SFX structure of dye-type peroxidase DtpB R243A variant in the ferric state | Descriptor: | MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE, Putative dye-decolorizing peroxidase (DyP), ... | Authors: | Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S. | Deposit date: | 2022-04-19 | Release date: | 2022-12-07 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB. Acs Catalysis, 12, 2022
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6TB8
| Dye Type Peroxidase Aa from Streptomyces lividans: spectroscopically-validated ferric state | Descriptor: | Deferrochelatase/peroxidase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Lucic, M, Moreno-Chicano, T.M, Hough, M.A, Dworkowski, F.S.N, Worrall, J.A.R. | Deposit date: | 2019-11-01 | Release date: | 2020-04-08 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | A subtle structural change in the distal haem pocket has a remarkable effect on tuning hydrogen peroxide reactivity in dye decolourising peroxidases from Streptomyces lividans. Dalton Trans, 49, 2020
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8RWY
| DtpB hexamer from Streptomyces lividans | Descriptor: | Dyp-type peroxidase family, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Worrall, J.A.R, Chaplin, A.K, Allport, T. | Deposit date: | 2024-02-05 | Release date: | 2024-06-26 | Method: | ELECTRON MICROSCOPY (3.02 Å) | Cite: | The oligomeric states of dye-decolorizing peroxidases from Streptomyces lividans and their implications for mechanism of substrate oxidation. Protein Sci., 33, 2024
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8CK9
| DyP-type peroxidase from Thermobifida halotolerans | Descriptor: | NITRATE ION, PROTOPORPHYRIN IX CONTAINING FE, Peroxidase | Authors: | Pupart, H, Lukk, T. | Deposit date: | 2023-02-14 | Release date: | 2024-02-28 | Last modified: | 2024-03-06 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Dye-decolorizing peroxidase of Thermobifida halotolerance displays complex kinetics with both substrate inhibition and apparent positive cooperativity. Arch.Biochem.Biophys., 754, 2024
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6KMM
| Crystal Structure of HEPES bound Dye Decolorizing peroxidase from Bacillus subtilis | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ... | Authors: | Dhankhar, P, Dalal, V, Mahto, J.K, Kumar, P. | Deposit date: | 2019-07-31 | Release date: | 2020-10-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Characterization of dye-decolorizing peroxidase from Bacillus subtilis. Arch.Biochem.Biophys., 693, 2020
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3O72
| Crystal structure of EfeB in complex with heme | Descriptor: | OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, Redox component of a tripartite ferrous iron transporter | Authors: | Liu, X, Du, Q, Wang, Z, Zhu, D, Huang, Y, Li, N, Xu, S, Gu, L. | Deposit date: | 2010-07-30 | Release date: | 2011-03-16 | Last modified: | 2017-11-08 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structure and biochemical features of EfeB/YcdB from Escherichia coli O157: ASP235 plays divergent roles in different enzyme-catalyzed processes J.Biol.Chem., 286, 2011
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5JXU
| Structural basis for the catalytic activity of Thermomonospora curvata heme-containing DyP-type peroxidase. | Descriptor: | Dyp-type peroxidase family, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Ramyar, K.X, Carlson, E.A, Li, P, Geisbrecht, B.V. | Deposit date: | 2016-05-13 | Release date: | 2016-10-19 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (1.751 Å) | Cite: | Identification of Surface-Exposed Protein Radicals and A Substrate Oxidation Site in A-Class Dye-Decolorizing Peroxidase from Thermomonospora curvata. ACS Catal, 6, 2016
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5DE0
| Dye-decolorizing protein from V. cholerae | Descriptor: | Deferrochelatase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Uchida, T, Sasaki, M, Tanaka, Y, Yao, M. | Deposit date: | 2015-08-25 | Release date: | 2015-10-21 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.24 Å) | Cite: | A Dye-Decolorizing Peroxidase from Vibrio cholerae. Biochemistry, 54, 2015
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5VJ0
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2GVK
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3QNS
| DyPB from Rhodococcus jostii RHA1, crystal form 2 | Descriptor: | DyP Peroxidase, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ... | Authors: | Grigg, J.C, Roberts, J.N, Singh, R, Eltis, L.D, Murphy, M.E.P. | Deposit date: | 2011-02-09 | Release date: | 2011-04-27 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1. Biochemistry, 50, 2011
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6Q3D
| Dye type peroxidase Aa from Streptomyces lividans: 235.2 kGy structure | Descriptor: | Deferrochelatase/peroxidase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Ebrahim, A, Moreno-Chicano, T, Worrall, J.A.R, Strange, R.W, Axford, D, Sherrell, D.A, Appleby, M, Owen, R.L. | Deposit date: | 2018-12-04 | Release date: | 2019-07-31 | Last modified: | 2024-05-15 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins. Iucrj, 6, 2019
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6Q3E
| Dye type peroxidase Aa from Streptomyces lividans: 274.4 kGy structure | Descriptor: | Deferrochelatase/peroxidase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Ebrahim, A, Moreno-Chicano, T, Worrall, J.A.R, Strange, R.W, Axford, D, Sherrell, D.A, Appleby, M, Owen, R.L. | Deposit date: | 2018-12-04 | Release date: | 2019-07-31 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.03 Å) | Cite: | Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins. Iucrj, 6, 2019
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2IIZ
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8FJQ
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8FJR
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5FW4
| Structure of Thermobifida fusca DyP-type Peroxidase and Activity towards Kraft Lignin and Lignin Model Compounds | Descriptor: | DYE-DECOLORIZING PEROXIDASE TFU_3078, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Rahmanpour, R, Rea, D, Jamshidi, S, Fulop, V, Bugg, T.D.H. | Deposit date: | 2016-02-11 | Release date: | 2016-04-06 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structure of Thermobifida Fusca Dyp-Type Peroxidase and Activity Towards Kraft Lignin and Lignin Model Compounds. Arch.Biochem.Biophys., 594, 2016
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5GT2
| Crystal Structure and Biochemical Features of dye-decolorizing peroxidase YfeX from Escherichia coli O157 | Descriptor: | PROTOPORPHYRIN IX CONTAINING FE, Probable deferrochelatase/peroxidase YfeX | Authors: | Ma, Y.L, Yuan, Z.G, Liu, S, Wang, J.X, Gu, L.C, Liu, X.H. | Deposit date: | 2016-08-18 | Release date: | 2017-02-08 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.093 Å) | Cite: | Crystal structure and biochemical features of dye-decolorizing peroxidase YfeX from Escherichia coli O157 Asp(143) and Arg(232) play divergent roles toward different substrates Biochem. Biophys. Res. Commun., 484, 2017
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2HAG
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8OLH
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8OHY
| Native Structure of Dictyostelium discoideum dye-decolorizing peroxidase | Descriptor: | PROTOPORPHYRIN IX CONTAINING FE, Peroxidase, ZINC ION | Authors: | Koua, F.H. | Deposit date: | 2023-03-21 | Release date: | 2023-03-29 | Last modified: | 2024-06-19 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Heterologous expression, purification and structural features of native Dictyostelium discoideum dye-decolorizing peroxidase bound to a natively incorporated heme. Front Chem, 11, 2023
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3QNR
| DyPB from Rhodococcus jostii RHA1, crystal form 1 | Descriptor: | DyP Peroxidase, FORMIC ACID, GLYCEROL, ... | Authors: | Singh, R, Roberts, J.N, Grigg, J.C, Eltis, L.D, Murphy, M.E.P. | Deposit date: | 2011-02-09 | Release date: | 2011-04-27 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1. Biochemistry, 50, 2011
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7BOK
| Cryo-EM structure of the encapsulated DyP-type peroxidase from Mycobacterium smegmatis | Descriptor: | Dyp-type peroxidase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Tang, Y.T, Mu, A, Gong, H.R, Wang, Q, Rao, Z.H. | Deposit date: | 2020-03-19 | Release date: | 2021-03-24 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (3.7 Å) | Cite: | Cryo-EM structure of Mycobacterium smegmatis DyP-loaded encapsulin. Proc.Natl.Acad.Sci.USA, 118, 2021
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