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7F5I
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BU of 7f5i by Molmil
X-ray structure of Clostridium perfringens-specific amidase endolysin
Descriptor: GLUTAMIC ACID, SODIUM ION, ZINC ION, ...
Authors:Kamitori, S, Tamai, E.
Deposit date:2021-06-22
Release date:2022-05-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and biochemical characterization of the Clostridium perfringens-specific Zn 2+ -dependent amidase endolysin, Psa, catalytic domain.
Biochem.Biophys.Res.Commun., 576, 2021
6IDM
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BU of 6idm by Molmil
Crystal structure of Peptidoglycan recognition protein (PGRP-S) with Tartaric acid at 3.20 A resolution
Descriptor: L(+)-TARTARIC ACID, Peptidoglycan recognition protein 1
Authors:Bairagya, H.R, Shokeen, A, Sharma, P, Singh, P.K, Sharma, S, Singh, T.P.
Deposit date:2018-09-10
Release date:2018-09-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of Peptidoglycan recognition protein (PGRP-S) with Tartaric acid at 3.20 A resolution
To Be Published
7XU8
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BU of 7xu8 by Molmil
Structure of the complex of camel peptidoglycan recognition protein-short (PGRP-S) with heptanoic acid at 2.15 A resolution.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, CARBONATE ION, ...
Authors:Maurya, A, Ahmad, N, Viswanathan, V, Singh, P.K, Yamini, S, Sharma, P, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2022-05-18
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Ligand recognition by peptidoglycan recognition protein-S (PGRP-S): structure of the complex of camel PGRP-S with heptanoic acid at 2.15 angstrom resolution.
Int J Biochem Mol Biol, 13, 2022
8C4D
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BU of 8c4d by Molmil
N-acetylmuramoyl-L-alanine amidase from Enterococcus faecium prophage genome
Descriptor: CHLORIDE ION, CITRATE ANION, N-acetylmuramoyl-L-alanine amidase, ...
Authors:Papageorgiou, A.C, Premetis, G.E, Labrou, N.E.
Deposit date:2023-01-03
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and functional features of a broad-spectrum prophage-encoded enzybiotic from Enterococcus faecium.
Sci Rep, 13, 2023
5XGY
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BU of 5xgy by Molmil
Crystal structure of peptidoglycan recognition protein (PGRP-S) at 2.45 A resolution
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, Peptidoglycan recognition protein 1
Authors:Shokeen, A, Sharma, P, Singh, P.K, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2017-04-18
Release date:2017-05-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of peptidoglycan recognition protein (PGRP-S) at 2.45 A resolution
To Be Published
7DY5
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BU of 7dy5 by Molmil
Structure of the ternary complex of peptidoglycan recognition protein-short (PGRP-S) with hexanoic acid and tartaric acid at 2.30A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Maurya, A, Viswanathan, V, Sharma, P, Sharma, S, Singh, T.P.
Deposit date:2021-01-20
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the ternary complex of peptidoglycan recognition protein-short (PGRP-S)
To Be Published
6SSC
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BU of 6ssc by Molmil
N-acetylmuramoyl-L-alanine amidase LysC from Clostridium intestinale URNW
Descriptor: GLYCEROL, N-acetylmuramoyl-L-alanine amidase, PHOSPHATE ION, ...
Authors:Hakansson, M, Al-Karadaghi, S, Kovacic, R, Plotka, M, Kaczorowska, A.K, Kaczorowski, T.
Deposit date:2019-09-06
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Molecular Characterization of a Novel Lytic Enzyme LysC from Clostridium intestinale URNW and Its Antibacterial Activity Mediated by Positively Charged N -Terminal Extension.
Int J Mol Sci, 21, 2020
2L47
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BU of 2l47 by Molmil
Solution structure of the PlyG catalytic domain
Descriptor: N-acetylmuramoyl-L-alanine amidase, ZINC ION
Authors:Volkman, B.F, Dias, J.S, Peterson, F.C.
Deposit date:2010-10-01
Release date:2011-10-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Tbd
To be Published
3HMB
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BU of 3hmb by Molmil
Mutant endolysin from Bacillus subtilis
Descriptor: N-acetylmuramoyl-L-alanine amidase xlyA, ZINC ION
Authors:Low, L.Y, Liddington, R.
Deposit date:2009-05-29
Release date:2010-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Role of net charge on catalytic domain and influence of cell wall binding domain on bactericidal activity, specificity, and host range of phage lysins.
J.Biol.Chem., 286, 2011
1J3G
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BU of 1j3g by Molmil
Solution structure of Citrobacter Freundii AmpD
Descriptor: AmpD protein, ZINC ION
Authors:Liepinsh, E, Genereux, C, Dehareng, D, Joris, B, Otting, G.
Deposit date:2003-01-31
Release date:2003-02-18
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR Structure of Citrobacter freundii AmpD, Comparison with Bacteriophage T7 Lysozyme and Homology with PGRP Domains
J.Mol.Biol., 327, 2003
6SRT
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BU of 6srt by Molmil
Endolysine N-acetylmuramoyl-L-alanine amidase LysCS from Clostridium intestinale URNW
Descriptor: GLYCEROL, N-acetylmuramoyl-L-alanine amidase, PHOSPHATE ION, ...
Authors:Hakansson, M, Al-Karadaghi, S, Plotka, M, Kaczorowska, A.-K, Kaczorowski, T.
Deposit date:2019-09-06
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Structure and function of endolysines LysCS, LysC from Clostridium intestinale
To Be Published
1LBA
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BU of 1lba by Molmil
THE STRUCTURE OF BACTERIOPHAGE T7 LYSOZYME, A ZINC AMIDASE AND AN INHIBITOR OF T7 RNA POLYMERASE
Descriptor: T7 LYSOZYME, ZINC ION
Authors:Cheng, X.
Deposit date:1993-12-22
Release date:1994-04-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structure of bacteriophage T7 lysozyme, a zinc amidase and an inhibitor of T7 RNA polymerase.
Proc.Natl.Acad.Sci.USA, 91, 1994
6SU5
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BU of 6su5 by Molmil
Ph2119 endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119
Descriptor: GLYCEROL, Lysozyme, PHOSPHATE ION, ...
Authors:Hakansson, M, Al-Karadaghi, S, Plotka, M, Kaczorowska, A.K, Kaczorowski, T.
Deposit date:2019-09-13
Release date:2020-09-30
Last modified:2021-04-14
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Molecular Characterization of a Novel Lytic Enzyme LysC from Clostridium intestinale URNW and Its Antibacterial Activity Mediated by Positively Charged N -Terminal Extension.
Int J Mol Sci, 21, 2020
4Z8I
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BU of 4z8i by Molmil
Crystal structure of Branchiostoma belcheri tsingtauense peptidoglycan recognition protein 3
Descriptor: ZINC ION, peptidoglycan recognition protein 3
Authors:Wang, W.J, Cheng, W, Jiang, Y.L, Luo, M, Cao, D.D, Chi, C.B, Yang, H.B, Chen, Y, Zhou, C.Z.
Deposit date:2015-04-09
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BbtPGRP3 via Fusion with a Chitin Binding Domain
Plos One, 10, 2015
4FNN
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BU of 4fnn by Molmil
Crystal structure of the complex of CPGRP-S with stearic acid at 2.2 A RESOLUTION
Descriptor: Peptidoglycan recognition protein 1, STEARIC ACID
Authors:Dube, D, Sharma, P, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2012-06-20
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural basis of the binding of fatty acids to peptidoglycan recognition protein, PGRP-S through second binding site.
Arch.Biochem.Biophys., 529, 2013
6FHG
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BU of 6fhg by Molmil
Crystal structure of the Ts2631 endolysin from Thermus scotoductus phage with the unique N-terminal moiety responsible for peptidoglycan anchoring
Descriptor: LysT endolysin, ZINC ION
Authors:Zeth, K, Sancho-Vaello, E, Plotka, M.
Deposit date:2018-01-14
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan binding.
Sci Rep, 9, 2019
6A89
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BU of 6a89 by Molmil
Crystal structure of the ternary complex of peptidoglycan recognition protein (PGRP-S) with Tartaric acid, Ribose and 2,6-DIAMINOPIMELIC ACID at 2.11 A resolution
Descriptor: 1,2-ETHANEDIOL, 2,6-DIAMINOPIMELIC ACID, GLYCEROL, ...
Authors:Bairagya, H.R, Shokeen, A, Sharma, P, Singh, P.K, Sharma, S, Singh, T.P.
Deposit date:2018-07-06
Release date:2018-07-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of the ternary complex of peptidoglycan recognition protein (PGRP-S) with Tartaric acid, Ribose and 2,6-DIAMINOPIMELIC ACID at 2.11 A resolution
To Be Published
5XZ4
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BU of 5xz4 by Molmil
The X-tay structure of Bumblebee PGRP-SA
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bumblebee peptidoglycan recognition protein SA, SULFATE ION
Authors:Liu, Y.J, Huang, J.X, Zhao, X.M, An, J.D.
Deposit date:2017-07-11
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural Insights into the Preferential Binding of PGRP-SAs from Bumblebees and Honeybees to Dap-Type Peptidoglycans Rather than Lys-Type Peptidoglycans.
J Immunol., 202, 2019
6CKH
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BU of 6ckh by Molmil
Manduca sexta Peptidoglycan Recognition Protein-1
Descriptor: Peptidoglycan-recognition protein
Authors:Hu, Y.
Deposit date:2018-02-28
Release date:2019-06-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The three-dimensional structure and recognition mechanism of Manduca sexta peptidoglycan recognition protein-1.
Insect Biochem.Mol.Biol., 108, 2019
4ZXM
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BU of 4zxm by Molmil
Crystal structure of PGRP domain from Branchiostoma belcheri tsingtauense peptidoglycan recognition protein 3
Descriptor: PGRP domain of peptidoglycan recognition protein 3
Authors:Wang, W.J, Cheng, W, Jiang, Y.L, Yu, H.M, Luo, M.
Deposit date:2015-05-20
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BbtPGRP3 via Fusion with a Chitin Binding Domain
Plos One, 10, 2015
1OHT
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BU of 1oht by Molmil
Peptidoglycan recognition protein LB
Descriptor: 1,2-ETHANEDIOL, CG14704 PROTEIN, L(+)-TARTARIC ACID, ...
Authors:Kim, M.-S, Byun, M, Oh, B.-H.
Deposit date:2003-05-31
Release date:2003-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Peptidoglycan Recognition Protein Lb from Drosophila Melanogaster
Nat.Immunol., 4, 2003
4GF9
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BU of 4gf9 by Molmil
Structural insights into the dual strategy of recognition of peptidoglycan recognition protein, PGRP-S: ternary complex of PGRP-S with LPS and fatty acid
Descriptor: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, GLYCEROL, Peptidoglycan recognition protein 1, ...
Authors:Sharma, P, Dube, D, Sinha, M, Yadav, S, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2012-08-03
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into the dual strategy of recognition by peptidoglycan recognition protein, PGRP-S: structure of the ternary complex of PGRP-S with lipopolysaccharide and stearic acid.
Plos One, 8, 2013
1TWQ
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BU of 1twq by Molmil
Crystal structure of the C-terminal PGN-binding domain of human PGRP-Ialpha in complex with PGN analog muramyl tripeptide
Descriptor: N-acetyl-beta-muramic acid, NICKEL (II) ION, muramyl tripeptide, ...
Authors:Guan, R, Roychowdury, A, Boons, G.-A, Mariuzza, R.A.
Deposit date:2004-07-01
Release date:2004-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for peptidoglycan binding by peptidoglycan recognition proteins
Proc.Natl.Acad.Sci.USA, 101, 2004
4IVV
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BU of 4ivv by Molmil
Catalytic amidase domain of the major autolysin LytA from Streptococcus pneumaniae
Descriptor: 1,2-ETHANEDIOL, Autolysin, ZINC ION
Authors:Sandalova, T, Achour, A.
Deposit date:2013-01-23
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Structural and functional insights into peptidoglycan access for the lytic amidase LytA of Streptococcus pneumoniae.
MBio, 5, 2014
2EAV
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BU of 2eav by Molmil
Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein Ibeta
Descriptor: NICKEL (II) ION, Peptidoglycan recognition protein-I-beta
Authors:Cho, S, Mariuzza, R.A.
Deposit date:2007-02-03
Release date:2007-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the bactericidal mechanism of human peptidoglycan recognition proteins
Proc.Natl.Acad.Sci.Usa, 104, 2007

 

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