Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8QE6
DownloadVisualize
BU of 8qe6 by Molmil
NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethylmethanamine
Descriptor: 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethyl-methanamine, RASK GTPase (Fragment)
Authors:Buetikofer, M, Orts, J.
Deposit date:2023-08-30
Release date:2024-10-16
Last modified:2025-05-07
Method:SOLUTION NMR
Cite:NMR2-Based Drug Discovery Pipeline Presented on the Oncogenic Protein KRAS.
J.Am.Chem.Soc., 147, 2025
7BCE
DownloadVisualize
BU of 7bce by Molmil
Notum Fragment 718
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[(4-methylpiperidin-1-yl)methyl]-1H-indole, DIMETHYL SULFOXIDE, ...
Authors:Zhao, Y, Jones, E.Y.
Deposit date:2020-12-19
Release date:2025-10-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural Analysis and Development of Notum Fragment Screening Hits.
Acs Chem Neurosci, 13, 2022
5YGR
DownloadVisualize
BU of 5ygr by Molmil
Crystal structure of PLP bound Diaminopropionate ammonia lyase from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Diaminopropionate ammonia lyase, ...
Authors:Geeta, D, Shveta, B, Shavithri, H.S, Murthy, M.R.N.
Deposit date:2017-09-25
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Comparative structural and enzymatic studies on Salmonella typhimurium diaminopropionate ammonia lyase reveal its unique features
J. Struct. Biol., 202, 2018
4YES
DownloadVisualize
BU of 4yes by Molmil
Thrombin in complex with (S)-(4-chloro-2-((1-(5-methyl-1H-pyrrole-2-carbonyl)pyrrolidine-2-carboxamido)methyl)phenyl)methanaminium
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Hirudin, ...
Authors:Orth, P.
Deposit date:2015-02-24
Release date:2015-06-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Improved Stability of Proline-Derived Direct Thrombin Inhibitors through Hydroxyl to Heterocycle Replacement.
Acs Med.Chem.Lett., 6, 2015
6XC1
DownloadVisualize
BU of 6xc1 by Molmil
Crystal structure of bacteriophage T4 spackle and lysozyme in orthorhombic form
Descriptor: 1,2-ETHANEDIOL, ISOPROPYL ALCOHOL, Lysozyme, ...
Authors:Shi, K, Oakland, J.T, Kurniawan, F, Moeller, N.H, Aihara, H.
Deposit date:2020-06-07
Release date:2020-12-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural basis of superinfection exclusion by bacteriophage T4 Spackle.
Commun Biol, 3, 2020
8FV3
DownloadVisualize
BU of 8fv3 by Molmil
EGFR(T790M/V948R) in complex with compound 1 (LN4503)
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, N-{(4P)-4-[(4P)-5-{3-[(8-fluoro-11-oxo-5,11-dihydro-10H-dibenzo[b,e][1,4]diazepin-10-yl)methyl]phenyl}-2-(methylsulfanyl)-1H-imidazol-4-yl]pyridin-2-yl}acetamide, ...
Authors:Ogboo, B.C, Heppner, D.E.
Deposit date:2023-01-18
Release date:2024-01-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Linking ATP and allosteric sites to achieve superadditive binding with bivalent EGFR kinase inhibitors.
Commun Chem, 7, 2024
6S4P
DownloadVisualize
BU of 6s4p by Molmil
The crystal structure of glycogen phosphorylase in complex with 13
Descriptor: (2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-(4-naphthalen-2-yl-1,3-thiazol-2-yl)oxane-3,4,5-triol, Glycogen phosphorylase, muscle form, ...
Authors:Kyriakis, E, Solovou, T.G.A, Papaioannou, O.S.E, Skamnaki, V.T, Leonidas, D.D.
Deposit date:2019-06-28
Release date:2020-02-19
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:The architecture of hydrogen and sulfur sigma-hole interactions explain differences in the inhibitory potency of C-beta-d-glucopyranosyl thiazoles, imidazoles and an N-beta-d glucopyranosyl tetrazole for human liver glycogen phosphorylase and offer new insights to structure-based design.
Bioorg.Med.Chem., 28, 2020
8UO6
DownloadVisualize
BU of 8uo6 by Molmil
HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII)
Descriptor: HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold
Authors:Tipo, J, Gottipati, K, Choi, K.
Deposit date:2023-10-19
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of HIV-1 RRE stem-loop II identifies two conformational states of the high-affinity Rev binding site.
Nat Commun, 15, 2024
9EZ3
DownloadVisualize
BU of 9ez3 by Molmil
Crystal structure of human CLK3 bound to RN129
Descriptor: 1-(5-~{tert}-butyl-2-quinolin-6-yl-pyrazol-3-yl)-3-[3-(4-morpholin-4-yl-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]urea, Dual specificity protein kinase CLK3, SULFATE ION
Authors:Kraemer, A, Raig, N, Knapp, S.
Deposit date:2024-04-10
Release date:2024-09-11
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Type II kinase inhibitors that target Parkinson's disease-associated LRRK2.
Sci Adv, 11, 2025
8QM5
DownloadVisualize
BU of 8qm5 by Molmil
Potential drug binding sites for translation initiation factor eIF4E
Descriptor: 1-(4-chlorophenyl)cyclopentane-1-carboxylic acid, Eukaryotic translation initiation factor 4E, TRIETHYLENE GLYCOL
Authors:Cleasby, A.
Deposit date:2023-09-21
Release date:2025-01-15
Last modified:2025-03-12
Method:X-RAY DIFFRACTION (1.889 Å)
Cite:Integrating fragment-based screening with targeted protein degradation and genetic rescue to explore eIF4E function.
Nat Commun, 15, 2024
6H2V
DownloadVisualize
BU of 6h2v by Molmil
Crystal structure of human METTL5-TRMT112 complex, the 18S rRNA m6A1832 methyltransferase at 2.5A resolution
Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, DI(HYDROXYETHYL)ETHER, ...
Authors:van Tran, N, Graille, M.
Deposit date:2018-07-16
Release date:2019-07-31
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:The human 18S rRNA m6A methyltransferase METTL5 is stabilized by TRMT112.
Nucleic Acids Res., 47, 2019
344D
DownloadVisualize
BU of 344d by Molmil
DETERMINATION BY MAD-DM OF THE STRUCTURE OF THE DNA DUPLEX D(ACGTACG(5-BRU))2 AT 1.46A AND 100K
Descriptor: DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*(BRU))-3')
Authors:Todd, A.R, Adams, A, Powell, H.R, Cardin, C.J.
Deposit date:1997-08-04
Release date:1997-09-26
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Determination by MAD-DM of the structure of the DNA duplex d[ACGTACG(5-BrU)]2 at 1.46 A and 100 K.
Acta Crystallogr.,Sect.D, 55, 1999
9E6Y
DownloadVisualize
BU of 9e6y by Molmil
Structure of CD112 (Nectin-2) domain 1 bound to CD112R (PVRIG)
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Nectin-2, ...
Authors:Luca, V.C, Singh, S.
Deposit date:2024-10-31
Release date:2025-05-07
Last modified:2025-08-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-guided engineering of CD112 receptor variants for optimized immunotherapy.
Mol.Ther., 33, 2025
7AGI
DownloadVisualize
BU of 7agi by Molmil
The structure of Artemis variant H35D
Descriptor: 1,2-ETHANEDIOL, Protein artemis, ZINC ION
Authors:Yosaatmadja, Y, Goubin, S, Newman, J.A, Mukhopadhyay, S.M.M, Dannerfjord, A.A, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Bountra, C, Gileadi, O.
Deposit date:2020-09-22
Release date:2020-10-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition.
Nucleic Acids Res., 49, 2021
6Y6H
DownloadVisualize
BU of 6y6h by Molmil
Crystal structure of STK17b (DRAK2) in complex with UNC-AP-194 probe
Descriptor: 1,2-ETHANEDIOL, 2-[6-(1-benzothiophen-2-yl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid, Serine/threonine-protein kinase 17B
Authors:Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Drewry, D, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-02-26
Release date:2020-03-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A Chemical Probe for Dark Kinase STK17B Derives Its Potency and High Selectivity through a Unique P-Loop Conformation.
J.Med.Chem., 63, 2020
6RYZ
DownloadVisualize
BU of 6ryz by Molmil
SalL with S-adenosyl methionine
Descriptor: 1,2-ETHANEDIOL, Adenosyl-chloride synthase, CHLORIDE ION, ...
Authors:McKean, I, Frese, A, Cuetos, A, Burley, G, Grogan, G.
Deposit date:2019-06-12
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:S-Adenosyl Methionine Cofactor Modifications Enhance the Biocatalytic Repertoire of Small Molecule C-Alkylation.
Angew.Chem.Int.Ed.Engl., 58, 2019
8Q0T
DownloadVisualize
BU of 8q0t by Molmil
Identification and optimisation of novel inhibitors of the Polyketide synthetase 13 thioesterase domain with antitubercular activity
Descriptor: 3-(3,4-dimethoxyphenyl)-~{N}-[2-(3,4-dimethoxyphenyl)ethyl]-1,2,4-oxadiazole-5-carboxamide, Polyketide synthase Pks13
Authors:Eadsforth, T.C, Punekar, A.S, Green, S.R, Baragana, B.
Deposit date:2023-07-29
Release date:2023-11-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification and Optimization of Novel Inhibitors of the Polyketide Synthase 13 Thioesterase Domain with Antitubercular Activity.
J.Med.Chem., 66, 2023
108D
DownloadVisualize
BU of 108d by Molmil
THE SOLUTION STRUCTURE OF A DNA COMPLEX WITH THE FLUORESCENT BIS INTERCALATOR TOTO DETERMINED BY NMR SPECTROSCOPY
Descriptor: 1,1-(4,4,8,8-TETRAMETHYL-4,8-DIAZAUNDECAMETHYLENE)-BIS-4-3-METHYL-2,3-DIHYDRO-(BENZO-1,3-THIAZOLE)-2-METHYLIDENE)-QUINOLINIUM, DNA (5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3')
Authors:Spielmann, H.P, Wemmer, D.E, Jacobsen, J.P.
Deposit date:1995-01-31
Release date:1995-06-03
Last modified:2024-03-13
Method:SOLUTION NMR
Cite:Solution structure of a DNA complex with the fluorescent bis-intercalator TOTO determined by NMR spectroscopy.
Biochemistry, 34, 1995
6ZY3
DownloadVisualize
BU of 6zy3 by Molmil
Cryo-EM structure of MlaFEDB in complex with phospholipid
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component, ...
Authors:Dong, C.J, Dong, H.H.
Deposit date:2020-07-30
Release date:2020-11-25
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into outer membrane asymmetry maintenance in Gram-negative bacteria by MlaFEDB.
Nat.Struct.Mol.Biol., 28, 2021
7SFM
DownloadVisualize
BU of 7sfm by Molmil
Mycobacterium tuberculosis Hip1 crystal structure
Descriptor: ACETATE ION, GLYCEROL, Hip1
Authors:Ostrov, D.A, Li, D.
Deposit date:2021-10-04
Release date:2022-08-24
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.149 Å)
Cite:2.1 angstrom crystal structure of the Mycobacterium tuberculosis serine hydrolase, Hip1, in its anhydro-form (Anhydrohip1).
Biochem.Biophys.Res.Commun., 630, 2022
5YRX
DownloadVisualize
BU of 5yrx by Molmil
Crystal structure of a hypothetical protein Rv3716c from Mycobacterium tuberculosis
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Nucleoid-associated protein Rv3716c
Authors:Deka, G, Gopalan, A, Prabhavathi, M, Savithri, H.S, Raja, A, Murthy, M.R.N.
Deposit date:2017-11-10
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and biophysical characterization of Rv3716c, a hypothetical protein from Mycobacterium tuberculosis
Biochem. Biophys. Res. Commun., 495, 2018
8HAS
DownloadVisualize
BU of 8has by Molmil
NARROW LEAF 1-close from Japonica
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Protein NARROW LEAF 1
Authors:Zhang, S.J, He, Y.J, Wang, N, Zhang, W.J, Liu, C.M.
Deposit date:2022-10-26
Release date:2024-05-01
Last modified:2025-07-16
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:NARROW LEAF 1-close from Japonica
To Be Published
8HAT
DownloadVisualize
BU of 8hat by Molmil
NARROW LEAF 1-open from Japonica
Descriptor: Protein NARROW LEAF 1
Authors:Zhang, S.J, He, Y.J, Wang, N, Zhang, W.J, Liu, C.M.
Deposit date:2022-10-26
Release date:2024-06-12
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:NARROW LEAF 1-open from Japonica
To Be Published
1AJ8
DownloadVisualize
BU of 1aj8 by Molmil
CITRATE SYNTHASE FROM PYROCOCCUS FURIOSUS
Descriptor: CITRATE SYNTHASE, CITRIC ACID, COENZYME A
Authors:Russell, R.J.M, Ferguson, J.M.C, Hough, D.W, Danson, M.J, Taylor, G.L.
Deposit date:1997-05-16
Release date:1997-11-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of citrate synthase from the hyperthermophilic archaeon pyrococcus furiosus at 1.9 A resolution,.
Biochemistry, 36, 1997
1ALC
DownloadVisualize
BU of 1alc by Molmil
REFINED STRUCTURE OF BABOON ALPHA-LACTALBUMIN AT 1.7 ANGSTROMS RESOLUTION. COMPARISON WITH C-TYPE LYSOZYME
Descriptor: ALPHA-LACTALBUMIN, CALCIUM ION
Authors:Acharya, K.R, Stuart, D.I, Phillips, D.C.
Deposit date:1989-08-14
Release date:1989-10-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Refined structure of baboon alpha-lactalbumin at 1.7 A resolution. Comparison with C-type lysozyme.
J.Mol.Biol., 208, 1989

243083

건을2025-10-15부터공개중

PDB statisticsPDBj update infoContact PDBjnumon