PDB: 1104 resultsInfo pagesStatus searchChemie searchBIRD

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2OKW	A non-invasive GFP-based biosensor for mercury ions Descriptor: Green fluorescent protein Authors: Chapleau, R.R, Blomberg, R, Ford, P.C, Sagermann, M. Deposit date: 2007-01-17 Release date: 2007-12-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Design of a highly specific and noninvasive biosensor suitable for real-time in vivo imaging of mercury (II) uptake. Protein Sci., 17, 2008
4KA9	Crystal structure analysis of single amino acid deletion mutations in EGFP Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Green fluorescent protein, ... Authors: Arpino, J.A.J, Rizkallah, P.J. Deposit date: 2013-04-22 Release date: 2014-05-07 Last modified: 2015-11-25 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Random single amino acid deletion sampling unveils structural tolerance and the benefits of helical registry shift on GFP folding and structure. Structure, 22, 2014
8XLD	Structure of the GFP:GFP-nanobody complex from Biortus. Descriptor: 1,2-ETHANEDIOL, Nanobody(Staygold-S2G10)-Nanobody(Staygold-S4F1), ZINC ION, ... Authors: Wang, F, Cheng, W, Yuan, Z, Lin, D, Bao, C. Deposit date: 2023-12-25 Release date: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of the GFP:GFP-nanobody complex from Biortus. To Be Published
3KPX	Crystal Structure Analysis of photoprotein clytin Descriptor: Apophotoprotein clytin-3, C2-HYDROPEROXY-COELENTERAZINE, CALCIUM ION Authors: Titushin, M.S, Li, Y, Stepanyuk, G.A, Wang, B.-C, Lee, J, Vysotski, E.S, Liu, Z.-J. Deposit date: 2009-11-17 Release date: 2010-10-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.899 Å) Cite: NMR derived topology of a GFP-photoprotein energy transfer complex J.Biol.Chem., 285, 2010
1GGX	RED FLUORESCENT PROTEIN (FP583 OR DSRED(CLONTECH)) FROM DISCOSOMA SP. Descriptor: PROTEIN (FLUORESCENT PROTEIN FP583) Authors: Wall, M.A, Socolich, M.A, Ranganathan, R. Deposit date: 2000-10-05 Release date: 2000-12-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Nat.Struct.Biol., 7, 2000
6RUM	Crystal structure of GFP-LAMA-G97 - a GFP enhancer nanobody with cpDHFR insertion and TMP and NADPH Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GFP-LAMA-G97 a GFP enhancer nanobody with cpDHFR insertion, ... Authors: Farrants, H, Tarnawski, M, Mueller, T.G, Otsuka, S, Hiblot, J, Koch, B, Kueblbeck, M, Kraeusslich, H.-G, Ellenberg, J, Johnsson, K. Deposit date: 2019-05-28 Release date: 2020-02-12 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Chemogenetic Control of Nanobodies. Nat.Methods, 17, 2020
6MWQ	Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP Descriptor: DARPin, Muscle-type aldolase chimeric fusion, Green fluorescent protein Authors: Weaver, S.J, Yao, Q. Deposit date: 2018-10-30 Release date: 2018-11-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3 Å) Cite: Fusion of DARPin to Aldolase Enables Visualization of Small Protein by Cryo-EM. Structure, 27, 2019
1YJF	Cyclized post-translational product for S65A Y66S (GFPhal) green fluorescent protein variant Descriptor: Green Fluorescent Protein, MAGNESIUM ION Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2005-01-14 Release date: 2005-02-15 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry. Biochemistry, 44, 2005
6OFM	Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-CH3Y); ih circular permutant (50-51) Descriptor: Green fluorescent protein (GFP); S65T, Y66(3-CH3Y); ih circular permutant (50-51) Authors: Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. Deposit date: 2019-03-31 Release date: 2019-07-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.48 Å) Cite: Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
7RRK	Crystal structure of fast switching M159E mutant of fluorescent protein Dronpa (Dronpa2) Descriptor: Fluorescent protein Dronpa Authors: Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. Deposit date: 2021-08-09 Release date: 2021-10-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.929 Å) Cite: Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
7RRH	Crystal structure of fast switching R66M/M159T mutant of fluorescent protein Dronpa (Dronpa2) Descriptor: Fluorescent protein Dronpa Authors: Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. Deposit date: 2021-08-09 Release date: 2021-10-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.747 Å) Cite: Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
7RRI	Crystal structure of fast switching S142A/M159T mutant of fluorescent protein Dronpa (Dronpa2) Descriptor: Fluorescent protein Dronpa Authors: Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. Deposit date: 2021-08-09 Release date: 2021-10-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.643 Å) Cite: Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
7RRJ	Crystal structure of fast switching M159Q mutant of fluorescent protein Dronpa (Dronpa2) Descriptor: Fluorescent protein Dronpa Authors: Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. Deposit date: 2021-08-09 Release date: 2021-10-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
6OFL	Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51) Descriptor: Green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51) Authors: Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. Deposit date: 2019-03-31 Release date: 2019-07-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
6OFO	Crystal structure of split green fluorescent protein (GFP); s10 circular permutant (194-195) Descriptor: Green fluorescent protein (GFP); s10 circular permutant (194-195) Authors: Lin, C.-Y, Romei, M.G, Deller, M.C, Doukov, T.I, Boxer, S.G. Deposit date: 2019-03-31 Release date: 2019-07-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.603 Å) Cite: Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
6OFK	Crystal structure of green fluorescent protein (GFP); S65T; ih circular permutant (50-51) Descriptor: ACETATE ION, Green Fluorescent Protein (GFP); S65T; ih circular permutant (50-51) Authors: Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. Deposit date: 2019-03-30 Release date: 2019-07-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
6OFN	Crystal structure of green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51) Descriptor: Green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51) Authors: Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. Deposit date: 2019-03-31 Release date: 2019-07-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.649 Å) Cite: Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
2ZO6	Crystal Structure of Kusabira-Cyan (KCY), a Cyan-Emitting GFP-Like Protein Descriptor: CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY) Authors: Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2008-05-06 Release date: 2009-05-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry, 48, 2009
6NHV	Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold Descriptor: DARP14 - Subunit B, Subunit A-DARPin, superfolder GFP Authors: Liu, Y, Huynh, D, Yeates, T.O. Deposit date: 2018-12-24 Release date: 2019-05-08 Last modified: 2019-11-27 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold. Nat Commun, 10, 2019
2ZO7	Crystal Structure of a Kusabira-Cyan Mutant (KCY-R1), a Cyan/Green-Emitting GFP-Like Protein Descriptor: CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) Authors: Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2008-05-06 Release date: 2009-05-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry, 48, 2009
6H01	Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66 Descriptor: Green fluorescent protein Authors: Kesgin-Schaefer, S, Tidow, H. Deposit date: 2018-07-06 Release date: 2019-04-24 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.776 Å) Cite: Crystal structure of a domain-swapped photoactivatable sfGFP variant provides evidence for GFP folding pathway. Febs J., 286, 2019
3MGF	Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5 Descriptor: Fluorescent protein Authors: Ebisawa, T, Yamamura, A, Ohtsuka, J, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M. Deposit date: 2010-04-06 Release date: 2011-03-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5 To be Published
1Z1P	Y66L variant of Enhanced Green Fluorescent Protein with 412-nm Absorbing Chromophore Descriptor: green fluorescent protein Authors: Rosenow, M.A, Patel, H.N, Wachter, R.M. Deposit date: 2005-03-04 Release date: 2005-06-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation. Biochemistry, 44, 2005
1Z1Q	Y66L Variant of Enhanced Green Fluorescent Protein with 374-nm Absorbing Chromophore Descriptor: Green Fluorescent Protein, SODIUM ION Authors: Rosenow, M.A, Patel, H.N, Wachter, R.M. Deposit date: 2005-03-04 Release date: 2005-06-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation. Biochemistry, 44, 2005
4PPJ	Crystal structure of Phanta, a weakly fluorescent photochromic GFP-like protein. ON state Descriptor: Monomeric Azami Green Authors: Don Paul, C, Traore, D.A.K, Devenish, R.J, Close, D, Bell, T, Bradbury, A, Wilce, M.C.J, Prescott, M. Deposit date: 2014-02-27 Release date: 2015-04-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: X-Ray Crystal Structure and Properties of Phanta, a Weakly Fluorescent Photochromic GFP-Like Protein. Plos One, 10, 2015

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