PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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5HZL	Secreted Internalin-like protein Lmo2445 from Listeria monocytogenes Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, CALCIUM ION, Lmo2445 protein Authors: Light, S.H, Minasov, G, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2016-02-02 Release date: 2016-02-17 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Secreted Internalin-like protein Lmo2445 from Listeria monocytogenes To Be Published
7Z06	Structure of YwlG (Q2FF14) from Staphylococcus aureus Descriptor: SULFATE ION, UPF0340 protein SAUSA300_2068 Authors: Schneider, S, Scheidler, C.M, Sieber, S.A. Deposit date: 2022-02-22 Release date: 2022-09-21 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Bidirectional sequestration between a bacterial hibernation factor and a glutamate metabolizing protein. Proc.Natl.Acad.Sci.USA, 119, 2022
2JVV	Solution Structure of E. coli NusG carboxyterminal domain Descriptor: Transcription antitermination protein nusG Authors: Schweimer, K, Scheckenhofer, U, Roesch, P. Deposit date: 2007-09-26 Release date: 2008-10-14 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Two structurally independent domains of E. coli NusG create regulatory plasticity via distinct interactions with RNA polymerase and regulators. J.Mol.Biol., 391, 2009
1LY1	Structure and Mechanism of T4 Polynucleotide Kinase Descriptor: SULFATE ION, polynucleotide kinase Authors: Wang, L.K, Lima, C.D, Shuman, S. Deposit date: 2002-06-06 Release date: 2002-07-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and mechanism of T4 polynucleotide kinase: an RNA repair enzyme. EMBO J., 21, 2002
4L1W	Crystal Structuer of Human 3-alpha Hydroxysteroid Dehydrogenase Type 3 in Complex with NADP+ and Progesterone Descriptor: Aldo-keto reductase family 1 member C2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROGESTERONE, ... Authors: Zhang, B, Hu, X.-J, Lin, S.-X. Deposit date: 2013-06-03 Release date: 2014-04-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Human 3-alpha hydroxysteroid dehydrogenase type 3 (3 alpha-HSD3): The V54L mutation restricting the steroid alternative binding and enhancing the 20 alpha-HSD activity J.Steroid Biochem.Mol.Biol., 141, 2014
2ASD	oxoG-modified Insertion Ternary Complex Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3', ... Authors: Rechkoblit, O, Malinina, L, Cheng, Y, Kuryavyi, V, Broyde, S, Geacintov, N.E, Patel, D.J. Deposit date: 2005-08-23 Release date: 2006-01-10 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion Plos Biol., 4, 2006
6S2G	Structure Of D80A-Fructofuranosidase From Xanthophyllomyces Dendrorhous Complexed With Fructose And Epigallocatechin Gallate (Egcg) Descriptor: (2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ramirez-Escudero, M, Sanz-Aparicio, J. Deposit date: 2019-06-20 Release date: 2020-04-29 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Deciphering the molecular specificity of phenolic compounds as inhibitors or glycosyl acceptors of beta-fructofuranosidase from Xanthophyllomyces dendrorhous. Sci Rep, 9, 2019
6S3Z	Structure Of D80A-Fructofuranosidase From Xanthophyllomyces Dendrorhous Complexed With Fructose And hydroquinone Descriptor: 1,2-ETHANEDIOL, 1,4-benzoquinone, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ramirez-Escudero, M, Sanz-Aparicio, J. Deposit date: 2019-06-26 Release date: 2020-04-29 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Deciphering the molecular specificity of phenolic compounds as inhibitors or glycosyl acceptors of beta-fructofuranosidase from Xanthophyllomyces dendrorhous. Sci Rep, 9, 2019
5ES4	RE-REFINEMENT OF INTEGRIN ALPHAXBETA2 ECTODOMAIN IN THE CLOSED/BENT CONFORMATION Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Sen, M, Springer, T.A. Deposit date: 2015-11-16 Release date: 2016-03-02 Last modified: 2022-03-23 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Leukocyte integrin alpha L beta 2 headpiece structures: The alpha I domain, the pocket for the internal ligand, and concerted movements of its loops. Proc.Natl.Acad.Sci.USA, 113, 2016
2X2W	Acetylglutamate kinase from Escherichia coli bound to N-acetyl-L-glutamyl-5-phosphate Descriptor: ACETYLGLUTAMATE KINASE, N-ACETYL-L-GLUTAMYL 5-PHOSPHATE, SULFATE ION Authors: Gil-Ortiz, F, Rubio, V. Deposit date: 2010-01-18 Release date: 2010-05-19 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Two crystal structures of Escherichia coli N-acetyl-L-glutamate kinase demonstrate the cycling between open and closed conformations. J. Mol. Biol., 399, 2010
5Y0P	Crystal structure of Bacillus subtilis TmcAL bound with alpha-thio ATP Descriptor: ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, UPF0348 protein B4417_3650 Authors: Yamashita, S, Tomita, K. Deposit date: 2017-07-18 Release date: 2018-07-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018
5Y0S	Crystal structure of apo Thermotoga maritima TmcAL(Form II) Descriptor: 1,2-ETHANEDIOL, Thermotoga maritima TmcAL Authors: Yamashita, S, Tomita, K. Deposit date: 2017-07-18 Release date: 2018-07-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.103 Å) Cite: Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018
5Y0R	Crystal structure of Thermotoga maritima TmcAL (apo, form I) Descriptor: TmTmcAL(SeMet) Authors: Yamashita, S, Tomita, K. Deposit date: 2017-07-18 Release date: 2018-07-18 Last modified: 2018-12-26 Method: X-RAY DIFFRACTION (3.11 Å) Cite: Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018
8A39	Crystal Structure of PaaX from Escherichia coli W Descriptor: DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive, GLYCEROL, ... Authors: Molina, R, Alba-Perez, A, Hermoso, J.A. Deposit date: 2022-06-07 Release date: 2023-07-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural characterization of PaaX, the main repressor of the phenylacetate degradation pathway in Escherichia coli W: A novel fold of transcription regulator proteins. Int.J.Biol.Macromol., 254, 2024
5Y0N	Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative) Descriptor: ADENOSINE-5'-TRIPHOSPHATE, UPF0348 protein B4417_3650 Authors: Yamashita, S, Tomita, K. Deposit date: 2017-07-18 Release date: 2018-07-18 Last modified: 2018-12-26 Method: X-RAY DIFFRACTION (2.302 Å) Cite: Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018
1OX5	TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE Descriptor: Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PHOSPHORIC ACID MONO-[5-({[5-CARBAMOYL-3-(5-PHOSPHONOOXY-5-DEOXY-RIBOFURANOSYL)- 3H-IMIDAZOL-4-YLAMINO]-METHYL}-AMINO)-2,3,4-TRIHYDROXY-PENTYL] ESTER Authors: Chaudhuri, B.N, Smith, J.L. Deposit date: 2003-04-01 Release date: 2003-06-17 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase:Crystal Structures of a Ternary Complex and the Free Enzyme Biochemistry, 42, 2003
4IFC	Crystal Structure of ADP-bound Human PRPF4B kinase domain Descriptor: ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, Serine/threonine-protein kinase PRP4 homolog Authors: Mechin, I, Haas, K, Chen, X, Zhang, Y, McLean, L. Deposit date: 2012-12-14 Release date: 2013-08-28 Last modified: 2013-11-06 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Evaluation of Cancer Dependence and Druggability of PRP4 Kinase Using Cellular, Biochemical, and Structural Approaches. J.Biol.Chem., 288, 2013
4IJP	Crystal Structure of Human PRPF4B kinase domain in complex with 4-{5-[(2-Chloro-pyridin-4-ylmethyl)-carbamoyl]-thiophen-2-yl}-benzo[b]thiophene-2-carboxylic acid amine Descriptor: 4-(5-{[(2-chloropyridin-4-yl)methyl]carbamoyl}thiophen-2-yl)-1-benzothiophene-2-carboxamide, SULFATE ION, Serine/threonine-protein kinase PRP4 homolog Authors: Mechin, I, Haas, K, Chen, X, Zhang, Y, McLean, L. Deposit date: 2012-12-22 Release date: 2013-08-28 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Evaluation of Cancer Dependence and Druggability of PRP4 Kinase Using Cellular, Biochemical, and Structural Approaches. J.Biol.Chem., 288, 2013
1OX6	TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE Descriptor: Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PYROPHOSPHATE 2-, ... Authors: Chaudhuri, B.N, Smith, J.L. Deposit date: 2003-04-01 Release date: 2003-06-17 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase: Crystal Structures of a Ternary Complex and the Free Enzyme Biochemistry, 42, 2003
4IIR	Crystal Structure of AMPPNP-bound Human PRPF4B kinase domain Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SULFATE ION, ... Authors: Mechin, I, Haas, K, Chen, X, Zhang, Y, McLean, L. Deposit date: 2012-12-20 Release date: 2013-08-28 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Evaluation of Cancer Dependence and Druggability of PRP4 Kinase Using Cellular, Biochemical, and Structural Approaches. J.Biol.Chem., 288, 2013
1OX4	TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE Descriptor: Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PYROPHOSPHATE 2-, ... Authors: Chaudhuri, B.N, Smith, J.L. Deposit date: 2003-04-01 Release date: 2003-06-17 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase: Crystal Structures of a Ternary Complex and the Free Enzyme Biochemistry, 42, 2003
5Y0Q	Crystal structure of BsTmcAL bound with AMPCPP Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650 Authors: Yamashita, S, Tomita, K. Deposit date: 2017-07-18 Release date: 2018-07-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018
5Y0O	Crystal structure of apo BsTmcAL Descriptor: UPF0348 protein B4417_3650 Authors: Yamashita, S, Tomita, K. Deposit date: 2017-07-18 Release date: 2018-07-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018
2BGK	X-Ray structure of apo-Secoisolariciresinol Dehydrogenase Descriptor: RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE Authors: Youn, B, Moinuddin, S.G, Davin, L.B, Lewis, N.G, Kang, C. Deposit date: 2004-12-23 Release date: 2005-01-13 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structures of Apo-Form and Binary/Ternary Complexes of Podophyllum Secoisolariciresinol Dehydrogenase, an Enzyme Involved in Formation of Health-Protecting and Plant Defense Lignans J.Biol.Chem., 280, 2005
5Y0T	Crystal structure of Thermotoga maritima TmcAL bound with alpha-thio ATP(Form II) Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, PENTAETHYLENE GLYCOL, ... Authors: Yamashita, S, Tomita, K. Deposit date: 2017-07-18 Release date: 2018-07-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018

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