PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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4P1Z	Structure of the MID domain from MIWI Descriptor: Piwi-like protein 1 Authors: Cora, E, McCarthy, A.A, Pillai, R.S. Deposit date: 2014-02-28 Release date: 2014-05-07 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The MID-PIWI module of Piwi proteins specifies nucleotide- and strand-biases of piRNAs. Rna, 20, 2014
1R6U	Crystal structure of an active fragment of human tryptophanyl-tRNA synthetase with cytokine activity Descriptor: GLYCEROL, TRYPTOPHANYL-5'AMP, Tryptophanyl-tRNA synthetase Authors: Yang, X.-L, Otero, F.J, Skene, R.J, McRee, D.E, Ribas de Pouplana, L, Schimmel, P. Deposit date: 2003-10-16 Release date: 2004-01-06 Last modified: 2021-10-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Functional and crystal structure analysis of active site adaptations of a potent anti-angiogenic human tRNA synthetase Structure, 15, 2007
2L3C	Solution structure of ADAR2 dsRBM1 bound to LSL RNA Descriptor: Double-stranded RNA-specific editase 1, RNA (34-MER) Authors: Allain, F, Stefl, R, Oberstrass, F. Deposit date: 2010-09-12 Release date: 2010-10-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove. Cell(Cambridge,Mass.), 143, 2010
2HQT	Crystal structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA aminoacylation and nuclear export cofactor Arc1p reveal a novel function for an old fold Descriptor: GU4 nucleic-binding protein 1, SULFATE ION Authors: Simader, H, Hothorn, M, Suck, D. Deposit date: 2006-07-19 Release date: 2006-09-05 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA-aminoacylation and nuclear-export cofactor Arc1p reveal a novel function for an old fold. ACTA CRYSTALLOGR.,SECT.D, 62, 2006
4G85	Crystal structure of human HisRS Descriptor: Histidine-tRNA ligase, cytoplasmic Authors: Wei, Z, Wu, J, Zhou, J.J, Yang, X.-L, Zhang, M, Schimmel, P. Deposit date: 2012-07-21 Release date: 2012-09-26 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.11 Å) Cite: Internally Deleted Human tRNA Synthetase Suggests Evolutionary Pressure for Repurposing. Structure, 20, 2012
5WLH	Crystal structure of LbaCas13a H328A (C2c2) bound to pre-crRNA (24-nt spacer) Descriptor: GLYCEROL, IODIDE ION, LbaCas13a H328A (C2c2), ... Authors: Knott, G.J, Doudna, J.A. Deposit date: 2017-07-26 Release date: 2017-09-13 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.80001032 Å) Cite: Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme. Nat. Struct. Mol. Biol., 24, 2017
2Z3N	complex structure of LF-transferase and peptide B Descriptor: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, peptide (PHE)(ARG)(TYR)(LEU)(GLY) Authors: Watanabe, K, Toh, Y, Tomita, K. Deposit date: 2007-06-04 Release date: 2007-10-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
2Z3K	complex structure of LF-transferase and rAF Descriptor: 2-(6-AMINO-OCTAHYDRO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ... Authors: Watanabe, K, Toh, Y, Tomita, K. Deposit date: 2007-06-04 Release date: 2007-10-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
4H4A	Crystal structure of the C-terminal domain of Drosophila melanogaster Zucchini Descriptor: Mitochondrial cardiolipin hydrolase Authors: Voigt, F, Schulz, E.C, Barabas, O. Deposit date: 2012-09-17 Release date: 2012-11-07 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of the primary piRNA biogenesis factor Zucchini reveals similarity to the bacterial PLD endonuclease Nuc. Rna, 18, 2012
4CNF	Crystal structure of Sulfolobus acidocaldarius TrmJ Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Van Laer, B, Somme, J, Roovers, M, Steyaert, J, Droogmans, L, Versees, W. Deposit date: 2014-01-22 Release date: 2014-07-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates. RNA, 20, 2014
4CNG	Crystal structure of Sulfolobus acidocaldarius TrmJ in complex with S-adenosyl-L-Homocysteine Descriptor: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SPOU RRNA METHYLASE Authors: Van Laer, B, Somme, J, Roovers, M, Steyaert, J, Droogmans, L, Versees, W. Deposit date: 2014-01-22 Release date: 2014-07-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates. RNA, 20, 2014
2Z3P	complex structure of LF-transferase and leucine Descriptor: D(-)-TARTARIC ACID, LEUCINE, Leucyl/phenylalanyl-tRNA-protein transferase Authors: Watanabe, K, Toh, Y, Tomita, K. Deposit date: 2007-06-04 Release date: 2007-10-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
2Z3O	complex structure of LF-transferase and phenylalanine Descriptor: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, PHENYLALANINE Authors: Watanabe, K, Toh, Y, Tomita, K. Deposit date: 2007-06-04 Release date: 2007-10-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
1Y42	Crystal structure of a C-terminally truncated CYT-18 protein Descriptor: TYROSINE, Tyrosyl-tRNA synthetase, mitochondrial Authors: Paukstelis, P.J, Coon, R, Madabusi, L, Nowakowski, J, Monzingo, A, Robertus, J, Lambowitz, A.M. Deposit date: 2004-11-29 Release date: 2005-02-15 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.95 Å) Cite: A tyrosyl-tRNA synthetase adapted to function in group I intron splicing by acquiring a new RNA binding surface. Mol.Cell, 17, 2005
8K3O	Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Afsar, M, Shukla, A, Ramachandran, R. Deposit date: 2023-07-16 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (3.88 Å) Cite: Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I To Be Published
2Z3M	complex structure of LF-transferase and dAF Descriptor: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ... Authors: Watanabe, K, Toh, Y, Tomita, K. Deposit date: 2007-06-04 Release date: 2007-10-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
4P2B	Crystal structure of the apo form of the glutaminyl-tRNA synthetase catalytic domain from Toxoplasma gondii. Descriptor: Glutamine aminoacyl-tRNA synthetase, SULFATE ION Authors: van Rooyen, J.M, Belrhali, H, Hakimi, M.A. Deposit date: 2014-03-03 Release date: 2015-03-18 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of the apo form of the glutaminyl-tRNA synthetase catalytic domain from Toxoplasma gondii. To Be Published
3TZL	Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni complexed with ADP and Tryptophane Descriptor: ADENOSINE-5'-DIPHOSPHATE, PHOSPHATE ION, SODIUM ION, ... Authors: Kim, Y, Zhou, M, Grimshaw, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2011-09-27 Release date: 2011-10-05 Method: X-RAY DIFFRACTION (2.154 Å) Cite: Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni complexed with ADP and Tryptophane To be Published
3IIN	Plasticity of the kink turn structural motif Descriptor: DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*GP*AP*CP*C)-D(P*AP*GP*A)-R(P*CP*GP*GP*CP*C)-3'), DNA/RNA (5'-R(*CP*A)-D(P*T)-3'), Group I intron, ... Authors: Lipchock, S.V, Strobel, S.A, Antonioli, A.H, Cochrane, J.C. Deposit date: 2009-08-02 Release date: 2010-03-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (4.18 Å) Cite: Plasticity of the RNA kink turn structural motif. Rna, 16, 2010
8K4E	Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Ramachandran, R, Afsar, M, Shukla, A. Deposit date: 2023-07-18 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II To Be Published
4LWQ	Crystal structure of native peptidyl t-RNA hydrolase from Acinetobacter baumannii at 1.38A resolution Descriptor: GLYCEROL, Peptidyl-tRNA hydrolase Authors: Kaushik, S, Singh, N, Sinha, M, Kaur, P, Sharma, S, Singh, T.P. Deposit date: 2013-07-28 Release date: 2013-08-14 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Crystal structure of native peptidyl t-RNA hydrolase from Acinetobacter baumannii at 1.38A resolution To be Published
3CR1	crystal structure of a minimal, mutant, all-RNA hairpin ribozyme (A38C, A-1OMA) grown from MgCl2 Descriptor: MAGNESIUM ION, RNA (5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3'), RNA (5'-R(*UP*CP*GP*UP*GP*GP*UP*CP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'), ... Authors: Salter, J.D, Wedekind, J.E. Deposit date: 2008-04-04 Release date: 2008-08-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
3AXZ	Crystal structure of Haemophilus influenzae TrmD in complex with adenosine Descriptor: ADENOSINE, tRNA (guanine-N(1)-)-methyltransferase Authors: Yoshida, K, Goto-Ito, S, Ito, T, Hou, Y.M, Yokoyama, S. Deposit date: 2011-04-21 Release date: 2011-08-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Differentiating analogous tRNA methyltransferases by fragments of the methyl donor. Rna, 17, 2011
2L2K	Solution NMR structure of the R/G STEM LOOP RNA-ADAR2 DSRBM2 Complex Descriptor: Adenosine deaminase, RNA (42-MER) Authors: Allain, F.H.-T, Oberstrass, F.C, Stefl, R. Deposit date: 2010-08-20 Release date: 2010-10-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove. Cell(Cambridge,Mass.), 143, 2010
1DRR	DNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH DNA STRAND, NMR, 10 STRUCTURES Descriptor: DNA (5'-D(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'), RNA (5'-R(*GP*CP*UP*UP*CP*UP*CP*UP*UP*C)-3') Authors: Gyi, J.I, Lane, A.N, Conn, G.L, Brown, T. Deposit date: 1997-10-21 Release date: 1998-04-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. Biochemistry, 37, 1998

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