PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

---

4WZS	Crystal structure of the Mot1 N-terminal domain in complex with TBP and NC2 bound to a promoter DNA fragment Descriptor: DNA (5'-D(P*CP*CP*AP*CP*CP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*T)-3'), DNA (5'-D(P*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*GP*GP*TP*GP*G)-3'), ECU04_1440 protein, ... Authors: Butryn, A, Hopfner, K.-P. Deposit date: 2014-11-20 Release date: 2015-08-26 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.78 Å) Cite: Structural basis for recognition and remodeling of the TBP:DNA:NC2 complex by Mot1. Elife, 4, 2015
2HWV	Crystal structure of an essential response regulator DNA binding domain, VicRc in Enterococcus faecalis, a member of the YycF subfamily. Descriptor: DNA-binding response regulator VicR, SULFATE ION Authors: Trinh, C.H, Liu, Y, Phillips, S.E.V, Phillips-Jones, M.K. Deposit date: 2006-08-02 Release date: 2007-01-23 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of the response regulator VicR DNA-binding domain. Acta Crystallogr.,Sect.D, 63, 2007
1NK8	A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
1NK9	A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP. Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
8ACZ	Solid-State NMR Atomic-Resolution Structure of the Protein Encoded by Gene V of fd Bacteriophage in Complex with Viral ssDNA Descriptor: DNA-Binding protein G5P Authors: Shamir, Y, Goldbourt, A. Deposit date: 2022-07-07 Release date: 2023-01-18 Last modified: 2024-06-19 Method: SOLID-STATE NMR Cite: Atomic-Resolution Structure of the Protein Encoded by Gene V of fd Bacteriophage in Complex with Viral ssDNA Determined by Magic-Angle Spinning Solid-State NMR. J.Am.Chem.Soc., 145, 2023
1NKB	A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP. Descriptor: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ... Authors: Johnson, S.J, Beese, L.S. Deposit date: 2003-01-02 Release date: 2004-03-30 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of mismatch replication errors observed in a DNA polymerase. Cell(Cambridge,Mass.), 116, 2004
2EZF	SOLUTION STRUCTURE OF A COMPLEX OF THE THIRD DNA BINDING DOMAIN OF HUMAN HMG-I(Y) BOUND TO DNA DODECAMER CONTAINING THE PRDII SITE OF THE INTERFERON-BETA PROMOTER, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: DNA (5'-D(*GP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*C)-3'), HIGH MOBILITY GROUP PROTEIN HMG-I/HMG-Y Authors: Clore, G.M, Huth, J.R, Bewley, C, Gronenborn, A.M. Deposit date: 1997-06-04 Release date: 1997-10-15 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motif. Nat.Struct.Biol., 4, 1997
2EZG	SOLUTION STRUCTURE OF A COMPLEX OF THE THIRD DNA BINDING DOMAIN OF HUMAN HMG-I(Y) BOUND TO DNA DODECAMER CONTAINING THE PRDII SITE OF THE INTERFERON-BETA PROMOTER, NMR, 35 STRUCTURES Descriptor: DNA (5'-D(*GP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*C)-3'), HIGH MOBILITY GROUP PROTEIN HMG-I/HMG-Y Authors: Clore, G.M, Huth, J.R, Bewley, C, Gronenborn, A.M. Deposit date: 1997-06-04 Release date: 1997-10-15 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motif. Nat.Struct.Biol., 4, 1997
4GG4	Crystal structure of the TAL effector dHax3 bound to specific DNA-RNA hybrid Descriptor: DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3, RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*UP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3') Authors: Yin, P, Deng, D, Yan, C.Y, Pan, X.J, Yan, N, Shi, Y.G. Deposit date: 2012-08-05 Release date: 2012-10-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.501 Å) Cite: Specific DNA-RNA hybrid recognition by TAL effectors Cell Rep, 2, 2012
7K01	Structure of TFIIH in TFIIH/Rad4-Rad23-Rad33 DNA opening complex Descriptor: DNA repair helicase RAD25, DNA repair helicase RAD3, General transcription and DNA repair factor IIH subunit SSL1, ... Authors: van Eeuwen, T, Min, J.H, Murakami, K. Deposit date: 2020-09-02 Release date: 2021-07-28 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair. Nat Commun, 12, 2021
3C1Z	Structure of the ligand-free form of a bacterial DNA damage sensor protein Descriptor: DNA integrity scanning protein disA Authors: Witte, G, Hartung, S, Buttner, K, Hopfner, K.P. Deposit date: 2008-01-24 Release date: 2008-05-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural Biochemistry of a Bacterial Checkpoint Protein Reveals Diadenylate Cyclase Activity Regulated by DNA Recombination Intermediates Mol.Cell, 30, 2008
2C22	Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Loukachevitch, L.V, Egli, M. Deposit date: 2005-09-26 Release date: 2005-11-29 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.56 Å) Cite: Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 J.Biol.Chem., 281, 2006
4U9M	Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds Descriptor: DNA (5'-D(*AP*TP*TP*AP*AP*T)-3') Authors: Acosta-Reyes, F.J, Alechaga, E, Subirana, J.A, Campos, J.L. Deposit date: 2014-08-06 Release date: 2015-04-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.13 Å) Cite: Structure of the DNA Duplex d(ATTAAT)2 with Hoogsteen Hydrogen Bonds. Plos One, 10, 2015
2C28	Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Loukachevitch, L.V, Egli, M. Deposit date: 2005-09-26 Release date: 2005-11-29 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 J.Biol.Chem., 281, 2006
2C2R	Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Loukachevitch, L.V, Egli, M. Deposit date: 2005-09-29 Release date: 2005-11-29 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 J.Biol.Chem., 281, 2006
2C2E	Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Loukachevitch, L.V, Egli, M. Deposit date: 2005-09-27 Release date: 2005-11-29 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 J.Biol.Chem., 281, 2006
5ZUX	Solution Structure of the DNA complex of the C-terminal Domain of Rok Descriptor: DNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*CP*TP*AP*GP*TP*TP*AP*TP*TP*AP*G)-3'), Rok Authors: Xia, B, Duan, B. Deposit date: 2018-05-08 Release date: 2018-10-17 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: How bacterial xenogeneic silencer rok distinguishes foreign from self DNA in its resident genome. Nucleic Acids Res., 46, 2018
4FM9	Human topoisomerase II alpha bound to DNA Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*AP*TP*CP*GP*TP*CP*AP*TP*CP*CP*TP*C)-3'), DNA (5'-D(P*GP*AP*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*G)-3'), DNA topoisomerase 2-alpha, ... Authors: Wendorff, T.J, Schmidt, B.H, Heslop, P, Austin, C.A, Berger, J.M. Deposit date: 2012-06-15 Release date: 2012-08-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.901 Å) Cite: The Structure of DNA-Bound Human Topoisomerase II Alpha: Conformational Mechanisms for Coordinating Inter-Subunit Interactions with DNA Cleavage. J.Mol.Biol., 424, 2012
5D2Q	Crystal structure of STPR from Bombyx Mori in complex with 20-bp DNA derived from +290 site of the fibroin gene Descriptor: DNA (40-MER), Fibroin-modulator-binding protein-1 Authors: Cheng, W. Deposit date: 2015-08-06 Release date: 2016-03-23 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of an all-alpha protein running along the DNA major groove. Nucleic Acids Res., 2016
3IAY	Ternary complex of DNA polymerase delta Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', ... Authors: Swan, M.K, Aggarwal, A.K. Deposit date: 2009-07-15 Release date: 2009-09-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase delta Nat.Struct.Mol.Biol., 16, 2009
1PDN	CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONS Descriptor: DNA (5'-D(*AP*AP*CP*GP*TP*CP*AP*CP*GP*GP*TP*TP*GP*AP*C)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*AP*AP*CP*CP*GP*TP*GP*AP*CP*G)-3'), PROTEIN (PRD PAIRED) Authors: Xu, W, Rould, M.A, Jun, S, Desplan, C, Pabo, C.O. Deposit date: 1995-05-16 Release date: 1995-07-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of a paired domain-DNA complex at 2.5 A resolution reveals structural basis for Pax developmental mutations. Cell(Cambridge,Mass.), 80, 1995
6I52	Yeast RPA bound to ssDNA Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), Replication factor A protein 1, Replication factor A protein 2, ... Authors: Yates, L.A, Aramayo, R.J, Zhang, X. Deposit date: 2018-11-12 Release date: 2018-12-19 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: A structural and dynamic model for the assembly of Replication Protein A on single-stranded DNA. Nat Commun, 9, 2018
3GXQ	Structure of ArtA and DNA complex Descriptor: DNA (5'-D(*AP*CP*AP*TP*GP*AP*CP*AP*TP*G)-3'), DNA (5'-D(*AP*CP*AP*TP*GP*TP*CP*AP*TP*GP*T)-3'), Putative regulator of transfer genes ArtA Authors: Ni, L, Firth, N, Schumacher, M.A. Deposit date: 2009-04-02 Release date: 2009-10-13 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.35 Å) Cite: The Staphylococcus aureus pSK41 plasmid-encoded ArtA protein is a master regulator of plasmid transmission genes and contains a RHH motif used in alternate DNA-binding modes. Nucleic Acids Res., 37, 2009
1BG1	TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX Descriptor: DNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3'), PROTEIN (TRANSCRIPTION FACTOR STAT3B) Authors: Becker, S, Groner, B, Muller, C.W. Deposit date: 1998-06-03 Release date: 1999-01-13 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Three-dimensional structure of the Stat3beta homodimer bound to DNA. Nature, 394, 1998
1BF4	CHROMOSOMAL DNA-BINDING PROTEIN SSO7D/D(GCGAACGC) COMPLEX Descriptor: DNA (5'-D(*GP*CP*GP*AP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*5IUP*CP*GP*C)-3'), PROTEIN (CHROMOSOMAL PROTEIN SSO7D) Authors: Su, S, Gao, Y.-G, Robinson, H, Padmanabhan, S, Lim, L, Shriver, J.W, Wang, A.H.-J. Deposit date: 1998-05-27 Release date: 1999-11-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA. Nat.Struct.Biol., 5, 1998

<53545556575859606162636465666768>