6YC3
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![BU of 6yc3 by Molmil](/molmil-images/mine/6yc3) | Crystal structure of the light-driven sodium pump KR2 in the pentameric form, pH 8.0 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ... | Authors: | Kovalev, K, Gushchin, I, Gordeliy, V. | Deposit date: | 2020-03-18 | Release date: | 2020-04-08 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Molecular mechanism of light-driven sodium pumping. Nat Commun, 11, 2020
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4Y9H
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![BU of 4y9h by Molmil](/molmil-images/mine/4y9h) | The 1.43 angstrom crystal structure of bacteriorhodopsin crystallized from bicelles | Descriptor: | Bacteriorhodopsin, DECANE, DODECANE, ... | Authors: | Saiki, H, Sugiyama, S, Kakinouchi, K, Kawatake, S, Hanashima, S, Matsumori, N, Murata, M. | Deposit date: | 2015-02-17 | Release date: | 2016-02-17 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.43 Å) | Cite: | The 1.43 angstrom crystal structure of bacteriorhodopsin crystallized from bicelles To Be Published
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7XJC
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![BU of 7xjc by Molmil](/molmil-images/mine/7xjc) | Crystal structure of bacteriorhodopsin in the ground and K states after green laser irradiation | Descriptor: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-01 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
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7XJE
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![BU of 7xje by Molmil](/molmil-images/mine/7xje) | Crystal structure of bacteriorhodopsin in the K state refined against the extrapolated dataset | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-01 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
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3UTY
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![BU of 3uty by Molmil](/molmil-images/mine/3uty) | |
7XJD
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![BU of 7xjd by Molmil](/molmil-images/mine/7xjd) | Crystal structure of bacteriorhodopsin in the ground state by red laser irradiation | Descriptor: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-22 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin. Commun Biol, 6, 2023
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1KG9
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![BU of 1kg9 by Molmil](/molmil-images/mine/1kg9) | Structure of a "mock-trapped" early-M intermediate of bacteriorhosopsin | Descriptor: | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, RETINAL, bacteriorhodopsin | Authors: | Facciotti, M.T, Rouhani, S, Burkard, F.T, Betancourt, F.M, Downing, K.H, Rose, R.B, McDermott, G, Glaeser, R.M. | Deposit date: | 2001-11-26 | Release date: | 2001-12-05 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (1.81 Å) | Cite: | Structure of an early intermediate in the M-state phase of the bacteriorhodopsin photocycle. Biophys.J., 81, 2001
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6YBY
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![BU of 6yby by Molmil](/molmil-images/mine/6yby) | Crystal structure of the D116N mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.6 | Descriptor: | EICOSANE, RETINAL, SODIUM ION, ... | Authors: | Kovalev, K, Gushchin, I, Gordeliy, V. | Deposit date: | 2020-03-18 | Release date: | 2020-04-08 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Molecular mechanism of light-driven sodium pumping. Nat Commun, 11, 2020
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6YC1
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![BU of 6yc1 by Molmil](/molmil-images/mine/6yc1) | Crystal structure of the H30A mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ... | Authors: | Kovalev, K, Gushchin, I, Gordeliy, V. | Deposit date: | 2020-03-18 | Release date: | 2020-04-08 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Molecular mechanism of light-driven sodium pumping. Nat Commun, 11, 2020
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6YC4
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![BU of 6yc4 by Molmil](/molmil-images/mine/6yc4) | Crystal structure of the steady-state activated state of the light-driven sodium pump KR2 in the pentameric form at room temperature, pH 8.0 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, GLYCEROL, ... | Authors: | Kovalev, K, Gushchin, I, Gordeliy, V. | Deposit date: | 2020-03-18 | Release date: | 2020-04-08 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Molecular mechanism of light-driven sodium pumping. Nat Commun, 11, 2020
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4YZI
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![BU of 4yzi by Molmil](/molmil-images/mine/4yzi) | Crystal structure of blue-shifted channelrhodopsin mutant (T198G/G202A) | Descriptor: | OLEIC ACID, RETINAL, Sensory opsin A,Archaeal-type opsin 2, ... | Authors: | Kato, H.E, Kamiya, M, Ishitani, R, Hayashi, S, Nureki, O. | Deposit date: | 2015-03-25 | Release date: | 2015-05-27 | Last modified: | 2020-02-19 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Atomistic design of microbial opsin-based blue-shifted optogenetics tools. Nat Commun, 6, 2015
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3VHZ
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![BU of 3vhz by Molmil](/molmil-images/mine/3vhz) | |
6YBZ
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![BU of 6ybz by Molmil](/molmil-images/mine/6ybz) | Crystal structure of the D116N mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ... | Authors: | Kovalev, K, Gushchin, I, Gordeliy, V. | Deposit date: | 2020-03-18 | Release date: | 2020-04-08 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Molecular mechanism of light-driven sodium pumping. Nat Commun, 11, 2020
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1O0A
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![BU of 1o0a by Molmil](/molmil-images/mine/1o0a) | BACTERIORHODOPSIN L INTERMEDIATE AT 1.62 A RESOLUTION | Descriptor: | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, 2,10,23-TRIMETHYL-TETRACOSANE, Bacteriorhodopsin, ... | Authors: | Lanyi, J.K. | Deposit date: | 2003-02-20 | Release date: | 2003-04-22 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | Mechanism of proton transport in bacteriorhodopsin from crystallographic structures of the
K, L, M1, M2, and M2' intermediates of the photocycle. J.Mol.Biol., 328, 2003
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1L0M
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![BU of 1l0m by Molmil](/molmil-images/mine/1l0m) | |
6YT4
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![BU of 6yt4 by Molmil](/molmil-images/mine/6yt4) | Crystal structure of the N112A mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, OLEIC ACID, ... | Authors: | Kovalev, K, Maliar, N, Astashkin, R, Gordeliy, V. | Deposit date: | 2020-04-23 | Release date: | 2020-06-17 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal Structure of the N112A Mutant of the Light-Driven Sodium Pump KR2 Crystals, 2020
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3UTW
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![BU of 3utw by Molmil](/molmil-images/mine/3utw) | Crystal structure of bacteriorhodopsin mutant P50A/Y57F | Descriptor: | 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Bacteriorhodopsin, RETINAL, ... | Authors: | Cao, Z, Bowie, J.U. | Deposit date: | 2011-11-27 | Release date: | 2012-05-09 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Shifting hydrogen bonds may produce flexible transmembrane helices. Proc.Natl.Acad.Sci.USA, 109, 2012
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1MGY
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![BU of 1mgy by Molmil](/molmil-images/mine/1mgy) | Structure of the D85S mutant of bacteriorhodopsin with bromide bound | Descriptor: | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, BROMIDE ION, Bacteriorhodopsin, ... | Authors: | Facciotti, M.T, Cheung, V.S, Nguyen, D, Rouhani, S, Glaeser, R.M. | Deposit date: | 2002-08-16 | Release date: | 2003-07-07 | Last modified: | 2021-10-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure of the Bromide-Bound D85S Mutant of Bacteriorhodopsin:
Principles of Ion Pumping Biophys.J., 85, 2003
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1M0K
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![BU of 1m0k by Molmil](/molmil-images/mine/1m0k) | BACTERIORHODOPSIN K INTERMEDIATE AT 1.43 A RESOLUTION | Descriptor: | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, 2,10,23-TRIMETHYL-TETRACOSANE, RETINAL, ... | Authors: | Lanyi, J.K. | Deposit date: | 2002-06-13 | Release date: | 2002-09-11 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.43 Å) | Cite: | Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal. J.Mol.Biol., 321, 2002
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7Z09
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![BU of 7z09 by Molmil](/molmil-images/mine/7z09) | Crystal structure of the ground state of bacteriorhodopsin at 1.05 Angstrom resolution | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ... | Authors: | Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V. | Deposit date: | 2022-02-22 | Release date: | 2022-05-04 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.05 Å) | Cite: | True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins. Nat.Struct.Mol.Biol., 29, 2022
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7Z0D
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![BU of 7z0d by Molmil](/molmil-images/mine/7z0d) | Crystal structure of the L state of bacteriorhodopsin at 1.20 Angstrom resolution | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ... | Authors: | Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V. | Deposit date: | 2022-02-22 | Release date: | 2022-05-04 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins. Nat.Struct.Mol.Biol., 29, 2022
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7Z0A
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![BU of 7z0a by Molmil](/molmil-images/mine/7z0a) | Crystal structure of the ground state of bacteriorhodopsin at 1.22 Angstrom resolution | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ... | Authors: | Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V. | Deposit date: | 2022-02-22 | Release date: | 2022-05-04 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.22 Å) | Cite: | True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins. Nat.Struct.Mol.Biol., 29, 2022
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7Z0C
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![BU of 7z0c by Molmil](/molmil-images/mine/7z0c) | Crystal structure of the K state of bacteriorhodopsin at 1.53 Angstrom resolution | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ... | Authors: | Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V. | Deposit date: | 2022-02-22 | Release date: | 2022-05-18 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins. Nat.Struct.Mol.Biol., 29, 2022
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3UTV
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![BU of 3utv by Molmil](/molmil-images/mine/3utv) | Crystal structure of bacteriorhodopsin mutant Y57F | Descriptor: | 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Bacteriorhodopsin, RETINAL | Authors: | Cao, Z, Bowie, J.U. | Deposit date: | 2011-11-26 | Release date: | 2012-05-09 | Last modified: | 2014-07-16 | Method: | X-RAY DIFFRACTION (2.06 Å) | Cite: | Shifting hydrogen bonds may produce flexible transmembrane helices. Proc.Natl.Acad.Sci.USA, 109, 2012
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7Z0E
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![BU of 7z0e by Molmil](/molmil-images/mine/7z0e) | Crystal structure of the M state of bacteriorhodopsin at 1.22 Angstrom resolution | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-PHYTANYL-GLYCEROL, ... | Authors: | Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V. | Deposit date: | 2022-02-22 | Release date: | 2022-05-18 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.22 Å) | Cite: | True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins. Nat.Struct.Mol.Biol., 29, 2022
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