PDB: 47065 resultsInfo pagesStatus searchChemie searchBIRD

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6P3Y	Crystal Structure of Full Length APOBEC3G E/Q (pH 7.4) Descriptor: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G, ZINC ION Authors: Yang, H.J, Li, S.X, Chen, X.S. Deposit date: 2019-05-25 Release date: 2020-02-12 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.57 Å) Cite: Understanding the structural basis of HIV-1 restriction by the full length double-domain APOBEC3G. Nat Commun, 11, 2020
8CDL	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-01-31 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.72 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CDR	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-01-31 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CF5	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-02 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.71 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CCS	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-01-27 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (1.97 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CGN	Non-rotated 80S S. cerevisiae ribosome with ligands Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-06 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.28 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CKU	Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-16 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CIV	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-10 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.47 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CMJ	Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-20 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.79 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CG8	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-03 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.57 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CEH	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-01 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.05 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
6P71	X-ray crystal structure of a bacterial reiterative transcription complex of pyrBI promoter Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*CP*GP*AP*GP*CP*CP*GP*GP*GP*A)-3'), DNA (5'-D(P*CP*TP*CP*CP*CP*GP*GP*CP*AP*AP*AP*TP*TP*GP*T)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-06-04 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.92 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
8C9N	MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle Descriptor: Penton protein Authors: Bufton, J.C, Capin, J, Boruku, U, Garzoni, F, Schaffitzel, C, Berger, I. Deposit date: 2023-01-23 Release date: 2023-12-06 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.36 Å) Cite: In vitro generated antibodies guide thermostable ADDomer nanoparticle design for nasal vaccination and passive immunization against SARS-CoV-2. Antib Ther, 6, 2023
8CKB	Asymmetric reconstruction of the crAss001 virion Descriptor: Auxiliary capsid protein gp36, Cargo protein 1 gp45, Head fiber dimer protein gp29, ... Authors: Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A. Deposit date: 2023-02-16 Release date: 2023-11-22 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.39 Å) Cite: Structural atlas of the most abundant human gut virus Nature
8CEE	Rnase R bound to a 30S degradation intermediate (State I - head-turning) Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N. Deposit date: 2023-02-01 Release date: 2023-12-20 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of ribosomal 30S subunit degradation by RNase R. Nature, 626, 2024
8CDU	Rnase R bound to a 30S degradation intermediate (main state) Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N. Deposit date: 2023-02-01 Release date: 2023-12-20 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of ribosomal 30S subunit degradation by RNase R. Nature, 626, 2024
8CED	Rnase R bound to a 30S degradation intermediate (State I - head-turning) Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N. Deposit date: 2023-02-01 Release date: 2023-12-20 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (4.15 Å) Cite: Structural basis of ribosomal 30S subunit degradation by RNase R. Nature, 626, 2024
8CEC	Rnase R bound to a 30S degradation intermediate (State I - head-turning) Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N. Deposit date: 2023-02-01 Release date: 2023-12-20 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.57 Å) Cite: Structural basis of ribosomal 30S subunit degradation by RNase R. Nature, 626, 2024
8CDV	Rnase R bound to a 30S degradation intermediate (state II) Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N. Deposit date: 2023-02-01 Release date: 2023-12-20 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (4.73 Å) Cite: Structural basis of ribosomal 30S subunit degradation by RNase R. Nature, 626, 2024
6PBY	Single particle cryo-EM structure of the voltage-gated K+ channel Eag1 3-13 deletion mutant bound to calmodulin (conformation 1) Descriptor: Calmodulin-1, Potassium voltage-gated channel subfamily H member 1 Authors: Whicher, J.R, MacKinnon, R. Deposit date: 2019-06-14 Release date: 2019-09-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.67 Å) Cite: Regulation of Eag1 gating by its intracellular domains. Elife, 8, 2019
8CD1	70S-PHIKZ014 Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Gerovac, M, Vogel, J. Deposit date: 2023-01-29 Release date: 2024-01-24 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3 Å) Cite: Phage proteins target and co-opt host ribosomes immediately upon infection. Nat Microbiol, 9, 2024
8C56	CpG specific M.MpeI methyltransferase crystallized in the presence of 2'-deoxy-5-methylzebularine (5mZ) and 5-methylcytosine containing dsDNA Descriptor: Cytosine-specific methyltransferase, DNA (5'-D(*CP*CP*AP*CP*AP*TP*GP*(5PY)P*GP*CP*TP*GP*AP*A)-3'), DNA (5'-D(*GP*TP*TP*CP*AP*GP*(5CM)P*GP*CP*AP*TP*GP*TP*G)-3'), ... Authors: Wojciechowski, M, Czapinska, H, Krwawicz, J, Rafalski, D, Bochtler, M. Deposit date: 2023-01-06 Release date: 2024-01-17 Last modified: 2024-07-17 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Cytosine analogues as DNA methyltransferase substrates. Nucleic Acids Res., 2024
8JHO	Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with di-nucleosome Descriptor: Chromatin modification-related protein EAF3, Di-nucleosome template foward, Di-nucleosome template reverse, ... Authors: Wang, H. Deposit date: 2023-05-25 Release date: 2023-09-27 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (7.6 Å) Cite: Structure of histone deacetylase complex Rpd3S bound to nucleosome. Nat.Struct.Mol.Biol., 30, 2023
6PBX	Single particle cryo-EM structure of the voltage-gated K+ channel Eag1 3-13 deletion mutant bound to calmodulin (conformation 2) Descriptor: Calmodulin-1, Potassium voltage-gated channel subfamily H member 1 Authors: Whicher, J.R, MacKinnon, R. Deposit date: 2019-06-14 Release date: 2019-09-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4 Å) Cite: Regulation of Eag1 gating by its intracellular domains. Elife, 8, 2019
8J6Z	Cryo-EM structure of the Arabidopsis thaliana photosystem I(PSI-LHCII-ST2) Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ... Authors: Chen, S.J.B, Wu, J.H, Sui, S.F, Zhang, L.X. Deposit date: 2023-04-26 Release date: 2023-11-15 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.79 Å) Cite: Regulatory dynamics of the higher-plant PSI-LHCI supercomplex during state transitions. Mol Plant, 16, 2023

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