PDB Search results for query - 일본 단백질구조 데이터 뱅크

PDB: 1867 results Info pages Status search Chemie search BIRD

Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874, composite map
Descriptor:	K-874A VHH, Spike glycoprotein
Authors:	Song, C, Katayama, K, Murata, K.
Deposit date:	2021-07-25
Release date:	2021-09-29
Last modified:	2022-03-23
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	Nasal delivery of single-domain antibody improves symptoms of SARS-CoV-2 infection in an animal model. Plos Pathog., 17, 2021

7FG7

Cryo-EM structure of S protein trimer of SARS-CoV2
Descriptor:	Spike glycoprotein
Authors:	Song, C, Murata, K, Katayama, K.
Deposit date:	2021-07-26
Release date:	2021-09-29
Last modified:	2022-03-23
Method:	ELECTRON MICROSCOPY (6.9 Å)
Cite:	Nasal delivery of single-domain antibody improves symptoms of SARS-CoV-2 infection in an animal model. Plos Pathog., 17, 2021

7FET

SARS-CoV-2 B.1.1.7 Spike Glycoprotein trimer
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Wen, Z.L, Zhu, Y, Sun, F.
Deposit date:	2021-07-21
Release date:	2021-12-15
Method:	ELECTRON MICROSCOPY (3.7 Å)
Cite:	Structure-based evidence for the enhanced transmissibility of the dominant SARS-CoV-2 B.1.1.7 variant (Alpha). Cell Discov, 7, 2021

7FAE

S protein of SARS-CoV-2 in complex bound with P36-5D2(state2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, P36-5D2 heavy chain, ...
Authors:	Zhang, L, Wang, X, Shan, S, Zhang, S.
Deposit date:	2021-07-06
Release date:	2021-12-22
Last modified:	2022-02-16
Method:	ELECTRON MICROSCOPY (3.65 Å)
Cite:	A Potent and Protective Human Neutralizing Antibody Against SARS-CoV-2 Variants. Front Immunol, 12, 2021

7FAF

S protein of SARS-CoV-2 in complex bound with P36-5D2 (state1)
Descriptor:	P36-5D2 heavy chain, P36-5D2 light chain, Spike glycoprotein
Authors:	Zhang, L, Wang, X, Zhang, S, Shan, S.
Deposit date:	2021-07-06
Release date:	2021-12-22
Last modified:	2022-02-16
Method:	ELECTRON MICROSCOPY (3.69 Å)
Cite:	A Potent and Protective Human Neutralizing Antibody Against SARS-CoV-2 Variants. Front Immunol, 12, 2021

7FCD

Structure of the SARS-CoV-2 A372T spike glycoprotein (open)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Wang, X, Zhang, S.
Deposit date:	2021-07-14
Release date:	2022-01-26
Last modified:	2022-03-16
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	Loss of Spike N370 glycosylation as an important evolutionary event for the enhanced infectivity of SARS-CoV-2. Cell Res., 32, 2022

7FCE

Structure of the SARS-CoV-2 A372T spike glycoprotein (closed)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Wang, X, Zhang, S.
Deposit date:	2021-07-14
Release date:	2022-01-26
Last modified:	2022-03-16
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	Loss of Spike N370 glycosylation as an important evolutionary event for the enhanced infectivity of SARS-CoV-2. Cell Res., 32, 2022

7F7E

SARS-CoV-2 S protein RBD in complex with A5-10 Fab
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of A5-10 Fab, Light chain of A5-10 Fab, ...
Authors:	Dou, Y, Wang, X, Wang, K, Liu, P, Lu, B.
Deposit date:	2021-06-29
Release date:	2022-02-02
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.49 Å)
Cite:	Etesevimab in combination with JS026 neutralizing SARS-CoV-2 and its variants. Emerg Microbes Infect, 11, 2022

7TCQ

Crystal structure of SARS-CoV-2 neutralizing antibody WS6 in complex with spike S2 peptide
Descriptor:	Anti-SARS-CoV-2 antibody WS6 Fab heavy chain, Anti-SARS-CoV-2 antibody WS6 Fab light chain, DI(HYDROXYETHYL)ETHER, ...
Authors:	Zhou, T, Kwong, P.D.
Deposit date:	2021-12-28
Release date:	2022-08-03
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.02 Å)
Cite:	Vaccine-elicited murine antibody WS6 neutralizes diverse beta-coronaviruses by recognizing a helical stem supersite of vulnerability. Structure, 30, 2022

7T7B

Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with a cross-neutralizing antibody ADI-62113 Fab
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ADI-62113 Fab heavy chain, ADI-62113 Fab light chain, ...
Authors:	Liu, H, Wilson, I.A.
Deposit date:	2021-12-14
Release date:	2022-08-03
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.59 Å)
Cite:	Human antibodies to SARS-CoV-2 with a recurring YYDRxG motif retain binding and neutralization to variants of concern including Omicron. Commun Biol, 5, 2022

7SWW

SARS-CoV-2 Spike NTD in complex with neutralizing Fab SARS2-57 (local refinement)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SARS2-57 Fv heavy chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:	2021-11-21
Release date:	2022-11-23
Last modified:	2023-02-01
Method:	ELECTRON MICROSCOPY (3.13 Å)
Cite:	A protective antibody targeting the N-terminal domain of SARS-CoV-2 spike recognizes most emerging variants To Be Published

7SWX

SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-57 (three down conformation)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SARS2-57 Fv heavy chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:	2021-11-21
Release date:	2022-11-23
Last modified:	2023-02-01
Method:	ELECTRON MICROSCOPY (3.13 Å)
Cite:	A protective antibody targeting the N-terminal domain of SARS-CoV-2 spike recognizes most emerging variants To Be Published

7T72

Epitope-based selection of SARS-CoV-2 neutralizing antibodies from convalescent patients
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody heavy chain, Antibody light chain, ...
Authors:	Langley, D.B, Christ, D, Rouet, R.
Deposit date:	2021-12-14
Release date:	2022-12-21
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (3.177 Å)
Cite:	Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients. Nat Commun, 14, 2023

7TOU

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; consensus state D1
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-24
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.24 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TOV

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 1-RBD-up conformation; consensus state D2
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-24
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.16 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TOX

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D5 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-24
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.62 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TOY

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D6 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-24
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.53 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TOZ

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D7 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-24
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (4.07 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TP0

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D8 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-24
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.57 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TP2

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D10 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-24
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.72 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TP8

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 1-RBD-up conformation; Subclassification D12 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-25
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TPA

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 1-RBD-up conformation; Subclassification D14 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-25
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.6 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TP1

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 3-RBD-down conformation; Subclassification D9 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-24
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.81 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TPC

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 1-RBD-up conformation; Subclassification D15 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-25
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (3.91 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

7TPE

Delta (B.1.617.2) SARS-CoV-2 variant spike protein (S-GSAS-Delta) in the 1-RBD-up conformation; Subclassification D16 state
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Gobeil, S, Acharya, P.
Deposit date:	2022-01-25
Release date:	2022-02-09
Last modified:	2023-04-12
Method:	ELECTRON MICROSCOPY (4 Å)
Cite:	Structural diversity of the SARS-CoV-2 Omicron spike. Mol.Cell, 82, 2022

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Total results:	1867
Displayed results:	25
Sorted by:	Hit score (from highest)
Query:	P0DTC2