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9DE5
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BU of 9de5 by Molmil
Structure of full-length HIV TAR RNA bound to HIV Tat RNA-binding domain
Descriptor: POTASSIUM ION, Protein Tat, RNA (55-MER)
Authors:Bou-Nader, C, Zhang, J.
Deposit date:2024-08-28
Release date:2025-03-12
Last modified:2025-03-19
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structures of complete HIV-1 TAR RNA portray a dynamic platform poised for protein binding and structural remodeling.
Nat Commun, 16, 2025
8EKZ
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BU of 8ekz by Molmil
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGGAGAAGTAGG)
Descriptor: DNA (5'-D(*AP*AP*TP*AP*AP*GP*GP*AP*GP*AP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*TP*AP*CP*TP*TP*CP*TP*CP*CP*TP*TP*AP*T)-3'), SODIUM ION, ...
Authors:Terrell, J.R, Poon, G.M.K.
Deposit date:2022-09-22
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
8EMD
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BU of 8emd by Molmil
Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAGCGGAAGTGGG)
Descriptor: DNA (5'-D(*AP*AP*TP*AP*AP*GP*CP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*GP*CP*TP*TP*AP*T)-3'), SODIUM ION, ...
Authors:Terrell, J.R, Poon, G.M.K.
Deposit date:2022-09-27
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
8E5Y
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BU of 8e5y by Molmil
Human PU.1 ETS-Domain Bound to d(AATAAGCGGAAGTGGG) Acetate Free at pH 5.4
Descriptor: DNA (5'-D(*AP*AP*TP*AP*AP*GP*CP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*GP*CP*TP*TP*AP*T)-3'), SODIUM ION, ...
Authors:Terrell, J.R, Poon, G.M.K.
Deposit date:2022-08-22
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
8EE9
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BU of 8ee9 by Molmil
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAATGGGG)
Descriptor: DNA (5'-D(*AP*AP*TP*AP*AP*AP*AP*GP*GP*AP*AP*TP*GP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*CP*AP*TP*TP*CP*CP*TP*TP*TP*TP*AP*T)-3'), Transcription factor PU.1
Authors:Terrell, J.R, Poon, G.M.K.
Deposit date:2022-09-06
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
8EK8
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BU of 8ek8 by Molmil
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAAAGGAGAAGGG)
Descriptor: DNA (5'-D(*AP*TP*AP*AP*AP*AP*GP*GP*AP*GP*AP*AP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*TP*TP*CP*TP*CP*CP*TP*TP*TP*TP*AP*T)-3'), Transcription factor PU.1
Authors:Terrell, J.R, Poon, G.M.K.
Deposit date:2022-09-20
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
8EBH
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BU of 8ebh by Molmil
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAATGGGG)
Descriptor: DNA (5'-D(*AP*AP*TP*AP*AP*GP*CP*GP*GP*AP*AP*TP*GP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*CP*AP*TP*TP*CP*CP*GP*CP*TP*TP*AP*T)-3'), Transcription factor PU.1
Authors:Terrell, J.R, Poon, G.M.K.
Deposit date:2022-08-31
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
8EJ6
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BU of 8ej6 by Molmil
Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGAGGAATGGGG)
Descriptor: DNA (5'-D(*AP*AP*TP*AP*AP*GP*AP*GP*GP*AP*AP*TP*GP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*CP*AP*TP*TP*CP*CP*TP*CP*TP*TP*AP*T)-3'), Transcription factor PU.1
Authors:Terrell, J.R, Poon, G.M.K.
Deposit date:2022-09-16
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:DNA selection by the master transcription factor PU.1.
Cell Rep, 42, 2023
5HY1
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BU of 5hy1 by Molmil
high resolution structure of barbiturase
Descriptor: 1,3,5-triazine-2,4,6-triol, Barbiturase, CHLORIDE ION, ...
Authors:Peat, T.S, Scott, C, Balotra, S, Wilding, M, Newman, J.
Deposit date:2016-02-01
Release date:2017-02-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:High-Resolution X-Ray Structures of Two Functionally Distinct Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes.
Appl. Environ. Microbiol., 83, 2017
5ZJN
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BU of 5zjn by Molmil
Structure of N-acetylmannosamine-6-phosphate-2-epimerase from Vibrio cholerae with N-acetylmannosamine-6-phosphate
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-acetylmannosamine-6-phosphate, ...
Authors:Manjunath, L, Guntupalli, S.
Deposit date:2018-03-21
Release date:2018-09-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae
Acta Crystallogr F Struct Biol Commun, 74, 2018
8IY6
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BU of 8iy6 by Molmil
ETB-Gi complex bound to Endotheline-1, focused on receptor
Descriptor: Endothelin type B receptor, Endothelin-1
Authors:Sano, F.K, Akasaka, H, Shihoya, W, Nureki, O.
Deposit date:2023-04-04
Release date:2023-08-16
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Cryo-EM structure of the endothelin-1-ET B -G i complex.
Elife, 12, 2023
5N7D
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BU of 5n7d by Molmil
MAGI-1 complexed with a RSK1 peptide
Descriptor: CALCIUM ION, GLYCEROL, Membrane-associated guanylate kinase, ...
Authors:Gogl, G, Nyitray, L.
Deposit date:2017-02-20
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Dynamic control of RSK complexes by phosphoswitch-based regulation.
FEBS J., 285, 2018
7VKW
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BU of 7vkw by Molmil
The apo structure of beta-1,2-glucosyltransferase from Ignavibacterium album
Descriptor: beta-1,2-glucosyltransferase
Authors:Kobayashi, K, Shimizu, H, Tanaka, N, Kuramochi, K, Nakai, H, Nakajima, M, Taguchi, H.
Deposit date:2021-10-01
Release date:2022-03-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Characterization and structural analyses of a novel glycosyltransferase acting on the beta-1,2-glucosidic linkages.
J.Biol.Chem., 298, 2022
8VKM
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BU of 8vkm by Molmil
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
Deposit date:2024-01-09
Release date:2024-02-14
Last modified:2025-02-26
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Altered receptor binding, antibody evasion and retention of T cell recognition by the SARS-CoV-2 XBB.1.5 spike protein.
Nat Commun, 15, 2024
8VKL
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BU of 8vkl by Molmil
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
Deposit date:2024-01-09
Release date:2024-02-14
Last modified:2025-02-26
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Altered receptor binding, antibody evasion and retention of T cell recognition by the SARS-CoV-2 XBB.1.5 spike protein.
Nat Commun, 15, 2024
9R3I
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BU of 9r3i by Molmil
Structure of liver pyruvate kinase in complex with fluorescent probe 4c
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, 4-[4-[[7-(dimethylamino)-2,1,3-benzoxadiazol-4-yl]sulfonyl]piperazin-1-yl]sulfonyl-5-pyridin-3-yl-benzene-1,2-diol, Isoform L-type of Pyruvate kinase PKLR
Authors:Bogucka, A, Nilsson, O, Grotli, M, Hyvonen, M.
Deposit date:2025-05-05
Release date:2025-08-13
Method:X-RAY DIFFRACTION (2.579 Å)
Cite:Fluorescent binding assay for allosteric ligands of liver pyruvate kinase.
Eur.J.Med.Chem., 298, 2025
7W2B
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BU of 7w2b by Molmil
The closed conformation of the sigma-1 receptor from Xenopus laevis
Descriptor: GOLD ION, Sigma non-opioid intracellular receptor 1, octyl beta-D-glucopyranoside
Authors:Meng, F, Sun, Z, Zhou, X.
Deposit date:2021-11-23
Release date:2022-03-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.203 Å)
Cite:An open-like conformation of the sigma-1 receptor reveals its ligand entry pathway.
Nat Commun, 13, 2022
8VKN
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BU of 8vkn by Molmil
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (focused refinement of RBD and mouse ACE2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
Deposit date:2024-01-09
Release date:2024-02-14
Last modified:2025-02-26
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Altered receptor binding, antibody evasion and retention of T cell recognition by the SARS-CoV-2 XBB.1.5 spike protein.
Nat Commun, 15, 2024
9BZP
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BU of 9bzp by Molmil
Homomeric alpha3 glycine receptor in the presence of 0.1 millimolar glycine and 1 micromolar zinc in a desensitized state
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, ...
Authors:Kindig, K, Gibbs, E, Chakrapani, S.
Deposit date:2024-05-24
Release date:2024-11-13
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Mechanisms underlying modulation of human GlyR alpha 3 by Zn 2+ and pH.
Sci Adv, 10, 2024
9QAN
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BU of 9qan by Molmil
Human angiotensin-1 converting enzyme C-domain in complex with ramiprilat
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ...
Authors:Gregory, K.S, Acharya, K.R.
Deposit date:2025-02-28
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular basis of domain-specific angiotensin I-converting enzyme inhibition by the antihypertensive drugs enalaprilat, ramiprilat, trandolaprilat, quinaprilat and perindoprilat.
Febs J., 2025
9BWJ
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BU of 9bwj by Molmil
Homomeric alpha3 glycine receptor in the presence of 0.1 mM glycine and 0.1 mM zinc in an apo state
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycine receptor subunit alpha-3, ...
Authors:Kindig, K, Gibbs, E, Chakrapani, S.
Deposit date:2024-05-21
Release date:2024-11-13
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Mechanisms underlying modulation of human GlyR alpha 3 by Zn 2+ and pH.
Sci Adv, 10, 2024
8ORP
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BU of 8orp by Molmil
Crystal structure of Drosophila melanogaster alpha-amylase in complex with the inhibitor acarbose
Descriptor: 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-4-{[(1S,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Aghajari, N, Haser, R.
Deposit date:2023-04-16
Release date:2023-08-16
Last modified:2025-10-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Functional Characterization of Drosophila melanogaster alpha-Amylase.
Molecules, 28, 2023
9C6E
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BU of 9c6e by Molmil
High-resolution structure of bovine (3-367)Arrestin-1 in a pre-activated conformation
Descriptor: GLYCEROL, GLYCOLIC ACID, S-arrestin, ...
Authors:Salom, D, Palczewski, K, Kiser, P.D.
Deposit date:2024-06-07
Release date:2024-11-06
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Insights into the Activation and Self-Association of Arrestin-1.
Biochemistry, 64, 2025
9BWG
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BU of 9bwg by Molmil
Homomeric alpha3 glycine receptor in the presence of 0.1 mM glycine and 0.1 mM zinc in a desensitized state
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, ...
Authors:Kindig, K, Gibbs, E, Chakrapani, S.
Deposit date:2024-05-21
Release date:2024-11-13
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Mechanisms underlying modulation of human GlyR alpha 3 by Zn 2+ and pH.
Sci Adv, 10, 2024
8QYX
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BU of 8qyx by Molmil
Human 60S ribosomal subunit
Descriptor: 1,4-DIAMINOBUTANE, 28S rRNA, 5.8S rRNA, ...
Authors:Wiechert, F, Schacherl, M, Sprink, T.
Deposit date:2023-10-26
Release date:2024-12-11
Last modified:2025-01-22
Method:ELECTRON MICROSCOPY (1.78 Å)
Cite:Visualizing the modification landscape of the human 60S ribosomal subunit at close to atomic resolution.
Nucleic Acids Res., 53, 2025

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