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8OO9	CryoEM Structure INO80core Hexasome complex ATPase-DNA refinement state1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chromatin-remodeling ATPase INO80, DNA strand 1, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-04 Release date: 2023-07-26 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
5O85	p34-p44 complex Descriptor: General transcription factor IIH subunit 2, General transcription factor IIH subunit 3, ZINC ION Authors: Radu, L, Poterszman, A. Deposit date: 2017-06-12 Release date: 2017-10-18 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The intricate network between the p34 and p44 subunits is central to the activity of the transcription/DNA repair factor TFIIH. Nucleic Acids Res., 45, 2017
1LWM	Solution Structure of the Sequence-Non-Specific HMGB protein NHP6A Descriptor: NONHISTONE CHROMOSOMAL PROTEIN 6A Authors: Masse, J.E, Wong, B, Yen, Y.-M, Allain, F.H.-T, Johnson, R.C, Feigon, J. Deposit date: 2002-05-31 Release date: 2002-10-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding J.Mol.Biol., 323, 2002
6LA9	349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 (high cryoprotectant) Descriptor: CALCIUM ION, DNA (349-MER), Histone H1.0, ... Authors: Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. Deposit date: 2019-11-12 Release date: 2020-10-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
4ENJ	Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-hydroxyethylguanine Descriptor: Alkyltransferase-like protein 1, DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*(EHG)P*CP*TP*AP*GP*TP*A)-3') Authors: Tubbs, J.L, Arvai, A.S, Tainer, J.A. Deposit date: 2012-04-13 Release date: 2012-06-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.0989 Å) Cite: Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines. Mol.Cell, 47, 2012
6XLK	Cryo-EM structure of EcmrR-DNA complex in EcmrR-RPitc-4nt Descriptor: CHAPSO, MerR family transcriptional regulator EcmrR, TETRAPHENYLANTIMONIUM ION, ... Authors: Yang, Y, Liu, C, Liu, B. Deposit date: 2020-06-28 Release date: 2021-04-07 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural visualization of transcription activated by a multidrug-sensing MerR family regulator. Nat Commun, 12, 2021
6XLA	Cryo-EM structure of EcmrR-DNA complex in EcmrR-RPitc-3nt Descriptor: MerR family transcriptional regulator EcmrR, TETRAPHENYLANTIMONIUM ION, synthetic non-template strand DNA (54-MER), ... Authors: Yang, Y, Liu, C, Shi, W, Liu, B. Deposit date: 2020-06-28 Release date: 2021-04-07 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural visualization of transcription activated by a multidrug-sensing MerR family regulator. Nat Commun, 12, 2021
6XL6	Cryo-EM structure of EcmrR-DNA complex in EcmrR-RPo Descriptor: CHAPSO, MerR family transcriptional regulator EcmrR, TETRAPHENYLANTIMONIUM ION, ... Authors: Yang, Y, Liu, C, Liu, B. Deposit date: 2020-06-28 Release date: 2021-04-07 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural visualization of transcription activated by a multidrug-sensing MerR family regulator. Nat Commun, 12, 2021
4R2I	The Crystal Structure of STIV B204 complexed with AMP-PNP Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, STIV B204 ATPase, ZINC ION Authors: Dellas, N, Nicolay, S.J, Young, M.J. Deposit date: 2014-08-12 Release date: 2016-01-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase. J.Virol., 90, 2015
5UAN	Crystal structure of multi-domain RAR-beta-RXR-alpha heterodimer on DNA Descriptor: (9cis)-retinoic acid, DNA (5'-D(*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)-3'), ... Authors: Chandra, V, Wu, D, Kim, Y, Rastinejad, F. Deposit date: 2016-12-19 Release date: 2017-10-18 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.508 Å) Cite: The quaternary architecture of RAR beta-RXR alpha heterodimer facilitates domain-domain signal transmission. Nat Commun, 8, 2017
4ENM	Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-benzylguanine Descriptor: Alkyltransferase-like protein 1, DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*(BZG)P*CP*TP*AP*GP*TP*A)-3') Authors: Tubbs, J.L, Arvai, A.S, Tainer, J.A. Deposit date: 2012-04-13 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8402 Å) Cite: Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines. Mol.Cell, 47, 2012
4ENK	Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-propylguanine Descriptor: Alkyltransferase-like protein 1, DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6PO)P*CP*TP*AP*GP*TP*A)-3') Authors: Tubbs, J.L, Arvai, A.S, Tainer, J.A. Deposit date: 2012-04-13 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.0445 Å) Cite: Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines. Mol.Cell, 47, 2012
4Y5U	Transcription factor Descriptor: NICKEL (II) ION, Signal transducer and activator of transcription 6 Authors: Li, J, Niu, F, Ouyang, S, Liu, Z. Deposit date: 2015-02-12 Release date: 2016-02-17 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.708 Å) Cite: Structural basis for DNA recognition by STAT6 Proc.Natl.Acad.Sci.USA, 113, 2016
4NLN	Structure of human DNA polymerase beta complexed with nicked DNA containing a template 8BrG and incoming CTP Descriptor: 5'-D(*CP*CP*GP*AP*CP*(BGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... Authors: Koag, M.-C, Min, K, Monzingo, A.F, Lee, S. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.261 Å) Cite: Structural basis for promutagenicity of 8-halogenated Guanine. J.Biol.Chem., 289, 2014
4NLZ	Structure of human DNA polymerase beta complexed with nicked DNA containing a mismatched template 8BrG and incoming GTP Descriptor: 5'-D(*CP*CP*GP*AP*CP*(BGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*AP*G)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... Authors: Koag, M.-C, Min, K, Monzingo, A.F, Lee, S. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.683 Å) Cite: Structural basis for promutagenicity of 8-halogenated Guanine. J.Biol.Chem., 289, 2014
3IAG	CSL (RBP-Jk) bound to HES-1 nonconsensus site Descriptor: 1,2-ETHANEDIOL, 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*AP*CP*AP*CP*GP*AP*T)-3', 5'-D(*TP*TP*AP*TP*CP*GP*TP*GP*TP*GP*AP*AP*AP*GP*A)-3', ... Authors: Friedmann, D.R, Kovall, R.A. Deposit date: 2009-07-13 Release date: 2009-11-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Thermodynamic and structural insights into CSL-DNA complexes. Protein Sci., 19, 2010
7QAZ	Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 - Primer Initiation Complex Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, COBALT (II) ION, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Li, A.W.H, Doherty, A.J. Deposit date: 2021-11-17 Release date: 2022-05-04 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.11 Å) Cite: Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022
2VZ4	The N-terminal domain of MerR-like protein TipAL bound to promoter DNA Descriptor: 5'-D(*CP*TP*CP*CP*TP*CP*AP*CP*GP*TP *CP*AP*CP*GP*TP*GP*AP*GP*GP*TP*G)-3', HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA Authors: Allan, M.G, Stetefeld, J, Schirmer, T. Deposit date: 2008-07-30 Release date: 2009-11-17 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of the Transcriptionally Inactive Merr Domain Tipan in Complex with DNA To be Published
3NKD	Structure of CRISP-associated protein Cas1 from Escherichia coli str. K-12 Descriptor: CRISPR-associated protein Cas1 Authors: Nocek, B, Skarina, T, Beloglazova, N, Savchenko, A, Joachimiak, A, Yakunin, A. Deposit date: 2010-06-18 Release date: 2010-08-25 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.95 Å) Cite: A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol.Microbiol., 79, 2011
7O7B	Solution NMR Structure of the Neh1 Domain of Human Nuclear factor erythroid 2-related factor 2 (NRF2) Descriptor: Isoform 3 of Nuclear factor erythroid 2-related factor 2 Authors: Brueschweiler, S. Deposit date: 2021-04-13 Release date: 2021-09-29 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: A Step toward NRF2-DNA Interaction Inhibitors by Fragment-Based NMR Methods. Chemmedchem, 16, 2021
4NM1	Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-C at N-1 position and G-C at N position Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*(BGM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... Authors: Koag, M.-C, Min, K, Monzingo, A.F, Lee, S. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.415 Å) Cite: Structural basis for promutagenicity of 8-halogenated Guanine. J.Biol.Chem., 289, 2014
4NMN	Aquifex aeolicus replicative helicase (DnaB) complexed with ADP, at 3.3 resolution Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Replicative DNA helicase, ... Authors: Lyubimov, A.Y, Strycharska, M.S, Erzberger, J.P, Berger, J.M. Deposit date: 2013-11-15 Release date: 2014-01-29 Method: X-RAY DIFFRACTION (3.301 Å) Cite: Nucleotide and partner-protein control of bacterial replicative helicase structure and function. Mol.Cell, 52, 2013
4NM2	Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-G at N-1 position and G-C at N position Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*(BGM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... Authors: Koag, M.-C, Min, K, Monzingo, A.F, Lee, S. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.524 Å) Cite: Structural basis for promutagenicity of 8-halogenated Guanine. J.Biol.Chem., 289, 2014
4NLK	Structure of human DNA polymerase beta complexed with 8BrG in the template base-paired with incoming non-hydrolyzable CTP Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, 5'-D(*CP*CP*GP*AP*CP*(BGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', ... Authors: Koag, M.-C, Min, K, Monzingo, A.F, Lee, S. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.494 Å) Cite: Structural basis for promutagenicity of 8-halogenated Guanine. J.Biol.Chem., 289, 2014
5ZLN	Crystal structure of mouse TLR9 in complex with two DNAs (CpG DNA and TCGCCA DNA) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*AP*GP*GP*CP*GP*TP*TP*TP*TP*T)-3'), ... Authors: Ishida, H, Ohto, U, Shimizu, T. Deposit date: 2018-03-28 Release date: 2018-04-25 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for species-specific activation of mouse Toll-like receptor 9 FEBS Lett., 592, 2018

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