PDB: 222926 resultsInfo pagesStatus searchChemie searchBIRD

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2PNE	Crystal Structure of the Snow Flea Antifreeze Protein Descriptor: 6.5 kDa glycine-rich antifreeze protein Authors: Pentelute, B.L, Kent, S.B.H, Gates, Z.P, Tereshko, V, Kossiakoff, A.A, Kurutz, J, Dashnau, J, Vaderkooi, J.M. Deposit date: 2007-04-24 Release date: 2008-04-29 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (0.98 Å) Cite: X-ray structure of snow flea antifreeze protein determined by racemic crystallization of synthetic protein enantiomers J.Am.Chem.Soc., 130, 2008
2ZPM	Crystal structure analysis of PDZ domain B Descriptor: Regulator of sigma E protease Authors: Inaba, K, Suzuki, M. Deposit date: 2008-07-17 Release date: 2008-10-21 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Crystal Structure analysis of PDZ-domain B To be Published
1S5M	Xylose Isomerase in Substrate and Inhibitor Michaelis States: Atomic Resolution Studies of a Metal-Mediated Hydride Shift Descriptor: MANGANESE (II) ION, SODIUM ION, Xylose isomerase, ... Authors: Fenn, T.D, Ringe, D, Petsko, G.A. Deposit date: 2004-01-21 Release date: 2004-02-10 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Xylose isomerase in substrate and inhibitor michaelis States: atomic resolution studies of a metal-mediated hydride shift(,). Biochemistry, 43, 2004
1IXH	PHOSPHATE-BINDING PROTEIN (PBP) COMPLEXED WITH PHOSPHATE Descriptor: PHOSPHATE ION, PHOSPHATE-BINDING PROTEIN Authors: Wang, Z, Luecke, H, Quiocho, F.A. Deposit date: 1996-08-01 Release date: 1998-02-04 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (0.98 Å) Cite: A low energy short hydrogen bond in very high resolution structures of protein receptor--phosphate complexes. Nat.Struct.Biol., 4, 1997
2V8T	Crystal structure of Mn catalase from Thermus Thermophilus complexed with chloride Descriptor: CHLORIDE ION, LITHIUM ION, MANGANESE (II) ION, ... Authors: Antonyuk, S.V, Barynin, V.V, Vaguine, A.A, Melik-Adamyan, W.R, Popov, A.N, Lamsin, V.S, Harrison, P.M, Artymiuk, P.J. Deposit date: 2007-08-14 Release date: 2007-09-11 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Three-Dimentional Structure of the Enzyme Dimanganese Catalase from Thermus Thermophilus at 1 Angstrom Resolution Crystallogr.Rep.(Transl. Kristallografiya), 45, 2000
4F1U	Subatomic resolution structure of a high affinity periplasmic phosphate-binding protein (PfluDING) bound with phosphate at pH 4.5 Descriptor: 1,2-ETHANEDIOL, HYDROGENPHOSPHATE ION, Putative alkaline phosphatase, ... Authors: Liebschner, D, Elias, M, Tawfik, D.S, Moniot, S, Fournier, B, Scott, K, Jelsch, C, Guillot, B, Lecomte, C, Chabriere, E. Deposit date: 2012-05-07 Release date: 2012-05-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (0.98 Å) Cite: The molecular basis of phosphate discrimination in arsenate-rich environments. Nature, 491, 2012
2VI3	Atomic resolution (0.98 A) structure of purified thaumatin I grown in sodium DL-tartrate at 20 C Descriptor: GLYCEROL, L(+)-TARTARIC ACID, THAUMATIN-1 Authors: Jakoncic, J, Asherie, N, Ginsberg, C. Deposit date: 2007-11-26 Release date: 2009-02-10 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Tartrate Chirality Determines Thaumatin Crystal Habit Cryst.Growth Des., 9, 2009
3WBO	Crystal Structure Analysis of the Z-DNA hexamer CGCGCG with 40 mM NaCl Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') Authors: Chatake, T. Deposit date: 2013-05-20 Release date: 2014-05-14 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Structural fluctuation observed in Z-DNA d(CGCGCG)2 in the absence of divalent metal cations and polyamines J.SYNCHROTRON RADIAT., 20, 2013
4HVW	Crystal structure of the T98E c-Src-SH3 domain mutant in complex with the high affinity peptide VSL12 Descriptor: ACETYL GROUP, Proto-oncogene tyrosine-protein kinase Src, SULFATE ION, ... Authors: Camara-Artigas, A. Deposit date: 2012-11-07 Release date: 2013-05-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Atomic resolution structures of the c-Src SH3 domain in complex with two high-affinity peptides from classes I and II. Acta Crystallogr.,Sect.D, 69, 2013
4HVU	Crystal structure of the T98D c-Src-SH3 domain mutant in complex with the high affinity peptide APP12 Descriptor: ACETYL GROUP, Proto-oncogene tyrosine-protein kinase Src, SULFATE ION, ... Authors: Camara-Artigas, A. Deposit date: 2012-11-07 Release date: 2013-05-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Atomic resolution structures of the c-Src SH3 domain in complex with two high-affinity peptides from classes I and II. Acta Crystallogr.,Sect.D, 69, 2013
7QYO	BAZ2A bromodomain in complex with acetylpyrrole derivative compound 79 Descriptor: 1-[2-methyl-4-(3-methylbutyl)-5-(2-piperazin-1-yl-1,3-thiazol-4-yl)-1~{H}-pyrrol-3-yl]ethanone, Bromodomain adjacent to zinc finger domain protein 2A Authors: Dalle Vedove, A, Cazzanelli, G, Caflisch, A, Lolli, G. Deposit date: 2022-01-28 Release date: 2022-09-28 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.983 Å) Cite: Identification of a BAZ2A-Bromodomain Hit Compound by Fragment Growing. Acs Med.Chem.Lett., 13, 2022
1EN9	1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. Descriptor: DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), MAGNESIUM ION Authors: Chiu, T.K, Dickerson, R.E. Deposit date: 2000-03-20 Release date: 2000-09-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (0.985 Å) Cite: 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J.Mol.Biol., 301, 2000
1ENE	1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. Descriptor: CALCIUM ION, DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), ETHANOL Authors: Chiu, T.K, Dickerson, R.E. Deposit date: 2000-03-21 Release date: 2000-09-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (0.985 Å) Cite: 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J.Mol.Biol., 301, 2000
1EN3	1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM Descriptor: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION Authors: Chiu, T.K, Dickerson, R.E. Deposit date: 2000-03-20 Release date: 2000-09-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (0.985 Å) Cite: 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J.Mol.Biol., 301, 2000
1EN8	1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM Descriptor: CALCIUM ION, DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), ETHANOL Authors: Chiu, T.K, Dickerson, R.E. Deposit date: 2000-03-20 Release date: 2000-09-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (0.985 Å) Cite: 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J.Mol.Biol., 301, 2000
5S3W	PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 Nsp3 macrodomain in complex with POB0135 Descriptor: (3R,4R)-4-(2-methylphenyl)oxolane-3-carboxylic acid, Non-structural protein 3 Authors: Fearon, D, Schuller, M, Rangel, V.L, Douangamath, A, Rack, J.G.M, Zhu, K, Aimon, A, Brandao-Neto, J, Dias, A, Dunnet, L, Gorrie-Stone, T.J, Powell, A.J, Krojer, T, Skyner, R, Thompson, W, Ahel, I, von Delft, F. Deposit date: 2020-11-02 Release date: 2021-01-13 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (0.987 Å) Cite: Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking. Sci Adv, 7, 2021
7Z9W	BRD4 in complex with FragLite1 Descriptor: 4-bromo-1H-pyrazole, GLYCEROL, Isoform C of Bromodomain-containing protein 4 Authors: Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M. Deposit date: 2022-03-21 Release date: 2022-12-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.988 Å) Cite: Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem., 65, 2022
5SBQ	CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z44592329 Descriptor: CD44 antigen, DIMETHYL SULFOXIDE, N-phenyl-N'-pyridin-3-ylurea, ... Authors: Bradshaw, W.J, Katis, V.L, Bezerra, G.A, Koekemoer, L, von Delft, F, Bountra, C, Brennan, P.E, Gileadi, O. Deposit date: 2021-09-14 Release date: 2021-09-22 Method: X-RAY DIFFRACTION (0.988 Å) Cite: CD44 PanDDA analysis group deposition To Be Published
3AGO	Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 3'-monophosphate Descriptor: CALCIUM ION, CHLORIDE ION, Ribonuclease U2, ... Authors: Noguchi, S. Deposit date: 2010-04-03 Release date: 2010-07-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (0.99 Å) Cite: Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate Acta Crystallogr.,Sect.D, 66, 2010
8A55	Structure of N-terminal SARS-CoV-2 nonstructural protein 1 (nsp1) at atomic resolution Descriptor: Host translation inhibitor nsp1 Authors: Ma, S, Pinotsis, N, Bowler, M.W, Kozielski, F. Deposit date: 2022-06-14 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.99 Å) Cite: Two Ligand-Binding Sites on SARS-CoV-2 Non-Structural Protein 1 Revealed by Fragment-Based X-ray Screening. Int J Mol Sci, 23, 2022
8WDG	Subatomic crystal structure of glucose isomerase from Streptomyces rubiginosus Descriptor: MAGNESIUM ION, Xylitol, Xylose isomerase Authors: Nam, K.H. Deposit date: 2023-09-15 Release date: 2023-10-04 Last modified: 2024-04-17 Method: X-RAY DIFFRACTION (0.99 Å) Cite: Xylitol binding to the M1 site of glucose isomerase induces a conformational change in the substrate binding channel. Biochem.Biophys.Res.Commun., 682, 2023
7KOM	High Resolution Crystal Structure of Putative Pterin Binding Protein PruR (VV2_1280) from Vibrio vulnificus CMCP6 Descriptor: FORMIC ACID, Oxidored_molyb domain-containing protein, SODIUM ION Authors: Minasov, G, Shuvalova, L, Kiryukhina, O, Dubrovska, I, Endres, M, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2020-11-09 Release date: 2021-11-17 Method: X-RAY DIFFRACTION (0.99 Å) Cite: High Resolution Crystal Structure of Putative Pterin Binding Protein PruR (VV2_1280) from Vibrio vulnificus CMCP6. To Be Published
6G1I	GH124 cellulase from Ruminiclostridium thermocellum in complex with Mn and fructosylated cellopentaose Descriptor: Glycosyl Hydrolase, MALONIC ACID, MANGANESE (II) ION, ... Authors: Urresti, S, Davies, G.J, Walton, P.H. Deposit date: 2018-03-21 Release date: 2018-08-15 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (0.99 Å) Cite: Structural studies of the unusual metal-ion site of the GH124 endoglucanase from Ruminiclostridium thermocellum. Acta Crystallogr F Struct Biol Commun, 74, 2018
3X2H	X-ray structure of PcCel45A N92D with cellopentaose at 95K. Descriptor: 3-methylpentane-1,5-diol, Endoglucanase V-like protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... Authors: Nakamura, A, Ishida, T, Samejima, M, Igarashi, K. Deposit date: 2014-12-22 Release date: 2015-10-07 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (0.99 Å) Cite: "Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography. Sci Adv, 1, 2015
7AM9	OMPD-domain of human UMPS in complex with the substrate OMP at 0.99 Angstroms resolution Descriptor: GLYCEROL, OROTIDINE-5'-MONOPHOSPHATE, SULFATE ION, ... Authors: Tittmann, K, Rindfleisch, S, Krull, M. Deposit date: 2020-10-08 Release date: 2021-11-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.99 Å) Cite: Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis Nat Catal, 5, 2022

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