PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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4WC0	tRNA-processing enzyme with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase Authors: Yamashita, S, Tomita, K. Deposit date: 2014-09-04 Release date: 2015-04-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
4WBZ	tRNA-processing enzyme (apo form 2) Descriptor: Poly A polymerase Authors: Yamashita, S, Tomtia, K. Deposit date: 2014-09-04 Release date: 2015-04-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
4WBY	tRNA-processing enzyme (apo form I) Descriptor: GLYCEROL, Poly A polymerase, SULFATE ION Authors: Yamashita, S, Tomita, K. Deposit date: 2014-09-04 Release date: 2015-04-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
5L80	Structure of Exuperantia EXO-like and SAM-like domains Descriptor: Maternal protein exuperantia,Maternal protein exuperantia Authors: Lazzaretti, D, Veith, K, Bono, F. Deposit date: 2016-06-05 Release date: 2016-07-06 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The bicoid mRNA localization factor Exuperantia is an RNA-binding pseudonuclease. Nat.Struct.Mol.Biol., 23, 2016
8IUE	RNA polymerase III pre-initiation complex melting complex 1 Descriptor: DNA (74-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Hou, H, Jin, Q, Ren, Y, Wang, Q, Xu, Y. Deposit date: 2023-03-24 Release date: 2023-05-24 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structure of the SNAPc-bound RNA polymerase III preinitiation complex. Cell Res., 33, 2023
8IUH	RNA polymerase III pre-initiation complex open complex 1 Descriptor: DNA (81-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Hou, H, Jin, Q, Ren, Y, Wang, Q, Xu, Y. Deposit date: 2023-03-24 Release date: 2023-05-24 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of the SNAPc-bound RNA polymerase III preinitiation complex. Cell Res., 33, 2023
5VVS	RNA pol II elongation complex Descriptor: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Lahiri, I, Leschziner, A.E. Deposit date: 2017-05-20 Release date: 2017-11-22 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (6.4 Å) Cite: Structural basis for the initiation of eukaryotic transcription-coupled DNA repair. Nature, 551, 2017
8EYQ	30S_delta_ksgA_h44_inactive_conformation Descriptor: 16S_rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Ortega, J, Sun, J. Deposit date: 2022-10-28 Release date: 2023-09-06 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion. Nat.Struct.Mol.Biol., 30, 2023
7Z1L	Structure of yeast RNA Polymerase III Pre-Termination Complex (PTC) Descriptor: (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Girbig, M, Mueller, C.W. Deposit date: 2022-02-24 Release date: 2022-08-31 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals. Cell Rep, 40, 2022
7Z1O	Structure of yeast RNA Polymerase III PTC + NTPs Descriptor: CHAPSO, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Girbig, M, Mueller, C.W. Deposit date: 2022-02-24 Release date: 2022-08-31 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals. Cell Rep, 40, 2022
7Z1M	Structure of yeast RNA Polymerase III Elongation Complex (EC) Descriptor: (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Girbig, M, Mueller, C.W. Deposit date: 2022-02-24 Release date: 2022-08-31 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals. Cell Rep, 40, 2022
7Z1N	Structure of yeast RNA Polymerase III Delta C53-C37-C11 Descriptor: CHAPSO, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Girbig, M, Mueller, C.W. Deposit date: 2022-02-24 Release date: 2022-08-31 Last modified: 2022-09-21 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals. Cell Rep, 40, 2022
7VF5	Human m6A-METTL associated complex (WTAP, VIRMA, and HAKAI) Descriptor: Pre-mRNA-splicing regulator WTAP, Protein virilizer homolog Authors: Su, S, Li, S, Deng, T, Gao, M, Yin, Y, Wu, B, Peng, C, Liu, J, Ma, J, Zhang, K. Deposit date: 2021-09-10 Release date: 2022-09-14 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM structures of human m6A writer complexes. Cell Res., 32, 2022
7VF2	Human m6A-METTL associated complex (WTAP, VIRMA, ZC3H13, and HAKAI) Descriptor: Pre-mRNA-splicing regulator WTAP, Protein virilizer homolog, Zinc finger CCCH domain-containing protein 13 Authors: Su, S, Li, S, Deng, T, Gao, M, Yin, Y, Wu, B, Peng, C, Liu, J, Ma, J, Zhang, K. Deposit date: 2021-09-10 Release date: 2022-09-14 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM structures of human m6A writer complexes. Cell Res., 32, 2022
4FHO	Crystal structure of an internalin C2 (inlC2) from Listeria monocytogenes str. 4b F2365 at 1.90 A resolution Descriptor: Internalin C2, SULFATE ION Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2012-06-06 Release date: 2012-07-11 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of an internalin C2 (inlC2) from Listeria monocytogenes str. 4b F2365 at 1.90 A resolution To be published
6L7V	Crystal structure of Cet1 from Trypanosoma cruzi in complex with tripolyphosphate, manganese and iodide ions. Descriptor: IODIDE ION, MANGANESE (II) ION, TRIPHOSPHATE, ... Authors: Kuwabara, N, Ho, K. Deposit date: 2019-11-03 Release date: 2020-06-03 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structures of the RNA triphosphatase fromTrypanosoma cruziprovide insights into how it recognizes the 5'-end of the RNA substrate. J.Biol.Chem., 295, 2020
6L7X	Crystal structure of Cet1 from Trypanosoma cruzi in complex with #951 ligand Descriptor: 1,3-dimethyl-7-propyl-purine-2,6-dione, SULFATE ION, mRNA_triPase domain-containing protein Authors: Kuwabara, N, Ho, K. Deposit date: 2019-11-03 Release date: 2020-06-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Crystal structures of the RNA triphosphatase fromTrypanosoma cruziprovide insights into how it recognizes the 5'-end of the RNA substrate. J.Biol.Chem., 295, 2020
6L7W	Crystal structure of Cet1 from Trypanosoma cruzi in complex with manganese ion. Descriptor: MANGANESE (II) ION, mRNA_triPase domain-containing protein Authors: Kuwabara, N, Ho, K. Deposit date: 2019-11-03 Release date: 2020-06-03 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structures of the RNA triphosphatase fromTrypanosoma cruziprovide insights into how it recognizes the 5'-end of the RNA substrate. J.Biol.Chem., 295, 2020
6L7Y	Crystal structure of Cet1 from Trypanosoma cruzi in complex with #466 ligand. Descriptor: 3,4,6,7-tetrahydroacridine-1,8(2H,5H)-dione, SULFATE ION, mRNA_triPase domain-containing protein Authors: Kuwabara, N, Ho, K. Deposit date: 2019-11-03 Release date: 2020-06-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Crystal structures of the RNA triphosphatase fromTrypanosoma cruziprovide insights into how it recognizes the 5'-end of the RNA substrate. J.Biol.Chem., 295, 2020
3NGZ	Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site Descriptor: 5'-D(P*GP*C)-3', COBALT (II) ION, MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NH1	Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site Descriptor: 5'-D(*TP*TP*AP*TP*AP*GP*G)-3', MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.107 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NGY	Crystal structure of RNase T (E92G mutant) Descriptor: COBALT (II) ION, Ribonuclease T, his tag sequence Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.204 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NH2	Crystal structure of RNase T in complex with a stem DNA with a 3' overhang Descriptor: 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NH0	Crystal structure of RNase T in complex with a non-preferred ssDNA (AAC) Descriptor: 5'-D(*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
1OYS	Crystal Structure of the Phosphorolytic Exoribonuclease RNase PH from Bacillus subtilis Descriptor: Ribonuclease PH Authors: Harlow, L.S, Kadziola, A, Jensen, K.F, Larsen, S. Deposit date: 2003-04-07 Release date: 2004-03-09 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis and implications for its quaternary structure and tRNA binding. Protein Sci., 13, 2004

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