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1FJ0
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BU of 1fj0 by Molmil
STRUCTURE DETERMINATION OF THE FERRICYTOCHROME C2 FROM RHODOPSEUDOMONAS PALUSTRIS
Descriptor: CYTOCHROME C2, GLYCEROL, HEME C, ...
Authors:Geremia, S.
Deposit date:2000-08-07
Release date:2002-01-16
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cleavage of the iron-methionine bond in c-type cytochromes: Crystal structure of oxidized and reduced cytochrome c(2) from Rhodopseudomonas palustris and its ammonia complex.
Protein Sci., 11, 2002
1FCS
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BU of 1fcs by Molmil
CRYSTAL STRUCTURE OF A DISTAL SITE DOUBLE MUTANT OF SPERM WHALE MYOGLOBIN AT 1.6 ANGSTROMS RESOLUTION
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Rizzi, M, Bolognesi, M, Coda, A, Cutruzzola, F, Travaglini Allocatelli, C, Brancaccio, A, Brunori, M.
Deposit date:1993-04-20
Release date:1993-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a distal site double mutant of sperm whale myoglobin at 1.6 A resolution.
FEBS Lett., 320, 1993
1UBZ
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BU of 1ubz by Molmil
Crystal structure of Glu102-mutant human lysozyme doubly labeled with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine
Descriptor: GLYCEROL, Lysozyme C, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Muraki, M, Harata, K.
Deposit date:2003-04-07
Release date:2003-04-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structural analysis of the ligand-recognition mechanism in the dual-affinity labeling of c-type lysozyme with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine
J.MOL.RECOG., 16, 2003
1UC0
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BU of 1uc0 by Molmil
Crystal structure of wild-type hen-egg white lysozyme singly labeled with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine
Descriptor: GLYCEROL, Lysozyme C, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Muraki, M, Harata, K.
Deposit date:2003-04-07
Release date:2003-04-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analysis of the ligand-recognition mechanism in the dual-affinity labeling of c-type lysozyme with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine
J.MOL.RECOG., 16, 2003
2EG7
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BU of 2eg7 by Molmil
The crystal structure of E. coli dihydroorotase complexed with HDDP
Descriptor: 2-OXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4,6-DICARBOXYLIC ACID, Dihydroorotase, ZINC ION
Authors:Lee, M, Maher, M.J, Guss, J.M.
Deposit date:2007-02-28
Release date:2007-07-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of Ligand-free and Inhibitor Complexes of Dihydroorotase from Escherichia coli: Implications for Loop Movement in Inhibitor Design
J.Mol.Biol., 370, 2007
6A3W
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BU of 6a3w by Molmil
Complex structure of 4-1BB and utomilumab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor receptor superfamily member 9, utomilumab VH, ...
Authors:Li, Y, Tan, S, Zhang, C, Chai, Y, Qi, J, Tien, P, Gao, S, Gao, G.F.
Deposit date:2018-06-17
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Limited Cross-Linking of 4-1BB by 4-1BB Ligand and the Agonist Monoclonal Antibody Utomilumab.
Cell Rep, 25, 2018
6O64
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BU of 6o64 by Molmil
Crystal Structure of Arabidopsis thaliana Spermidine Synthase isoform 2 (AtSPDS2)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Sekula, B, Dauter, Z.
Deposit date:2019-03-05
Release date:2019-06-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spermidine Synthase (SPDS) Undergoes Concerted Structural Rearrangements Upon Ligand Binding - A Case Study of the Two SPDS Isoforms FromArabidopsis thaliana.
Front Plant Sci, 10, 2019
1X59
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BU of 1x59 by Molmil
Solution structures of the WHEP-TRS domain of human histidyl-tRNA synthetase
Descriptor: Histidyl-tRNA synthetase
Authors:Nameki, N, Sasagawa, A, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-15
Release date:2005-11-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structures of the WHEP-TRS domain of human histidyl-tRNA synthetase
To be Published
3U1J
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BU of 3u1j by Molmil
Aprotinin bound to Dengue virus protease
Descriptor: Pancreatic trypsin inhibitor, Serine protease NS3, Serine protease subunit NS2B
Authors:Noble, C.G.
Deposit date:2011-09-30
Release date:2011-11-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ligand-bound structures of the dengue virus protease reveal the active conformation
J.Virol., 86, 2012
1J16
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BU of 1j16 by Molmil
BENZAMIDINE IN COMPLEX WITH RAT TRYPSIN MUTANT X99/175/190RT
Descriptor: BENZAMIDINE, CALCIUM ION, SULFATE ION, ...
Authors:Stubbs, M.T.
Deposit date:2002-11-30
Release date:2002-12-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Reconstructing the Binding Site of Factor Xa in Trypsin Reveals Ligand-induced Structural Plasticity
J.MOL.BIOL., 325, 2003
2QBL
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BU of 2qbl by Molmil
Crystal structure of ferric G248T cytochrome P450cam
Descriptor: CAMPHOR, Cytochrome P450-cam, POTASSIUM ION, ...
Authors:von Koenig, K, Makris, T.M, Sligar, S.D, Schlichting, I.
Deposit date:2007-06-18
Release date:2007-12-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Alteration of P450 Distal Pocket Solvent Leads to Impaired Proton Delivery and Changes in Heme Geometry.
Biochemistry, 46, 2007
2QBN
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BU of 2qbn by Molmil
Crystal structure of ferric G248V cytochrome P450cam
Descriptor: CAMPHOR, Cytochrome P450-cam, POTASSIUM ION, ...
Authors:von Koenig, K, Makris, T.M, Sligar, S.D, Schlichting, I.
Deposit date:2007-06-18
Release date:2007-12-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Alteration of P450 Distal Pocket Solvent Leads to Impaired Proton Delivery and Changes in Heme Geometry.
Biochemistry, 46, 2007
5BOJ
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BU of 5boj by Molmil
Crystal Structure of Human Transthyretin in Complex with Gemfibrozil
Descriptor: 5-(2,5-dimethylphenoxy)-2,2-dimethylpentanoic acid, SODIUM ION, Transthyretin
Authors:Begum, A, Olofsson, A, Sauer-Eriksson, A.E.
Deposit date:2015-05-27
Release date:2015-08-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Enthalpic Forces Correlate with the Selectivity of Transthyretin-Stabilizing Ligands in Human Plasma.
J.Med.Chem., 58, 2015
1IUY
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BU of 1iuy by Molmil
Solution structure of the cullin-3 homologue
Descriptor: cullin-3 homologue
Authors:Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-08
Release date:2003-10-07
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the cullin-3 homologue
To be published
6O63
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BU of 6o63 by Molmil
Crystal Structure of Arabidopsis thaliana Spermidine Synthase isoform 1 (AtSPDS1)
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, SULFATE ION, ...
Authors:Sekula, B, Dauter, Z.
Deposit date:2019-03-05
Release date:2019-06-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spermidine Synthase (SPDS) Undergoes Concerted Structural Rearrangements Upon Ligand Binding - A Case Study of the Two SPDS Isoforms FromArabidopsis thaliana.
Front Plant Sci, 10, 2019
3LEN
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BU of 3len by Molmil
Human Aldose Reductase mutant T113S complexed with Zopolrestat
Descriptor: 3,4-DIHYDRO-4-OXO-3-((5-TRIFLUOROMETHYL-2-BENZOTHIAZOLYL)METHYL)-1-PHTHALAZINE ACETIC ACID, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Koch, C, Heine, A, Klebe, G.
Deposit date:2010-01-15
Release date:2011-01-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Ligand-induced fit affects binding modes and provokes changes in crystal packing of aldose reductase
Biochim.Biophys.Acta, 1810, 2011
1X26
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BU of 1x26 by Molmil
Solution structure of the AA-mismatch DNA complexed with naphthyridine-azaquinolone
Descriptor: 5'-D(*CP*AP*TP*TP*CP*AP*GP*TP*TP*AP*G)-3', 5'-D(*CP*TP*AP*AP*CP*AP*GP*AP*AP*TP*G)-3', N~3~-{3-[(7-METHYL-1,8-NAPHTHYRIDIN-2-YL)AMINO]-3-OXOPROPYL}-N~1~-[(7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-2-YL)METHYL]-BET A-ALANINAMIDE
Authors:Nakatani, K, Hagihara, S, Goto, Y, Kobori, A, Hagihara, M, Hayashi, G, Kyo, M, Nomura, M, Mishima, M, Kojima, C.
Deposit date:2005-04-20
Release date:2006-04-04
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Small-molecule ligand induces nucleotide flipping in (CAG)n trinucleotide repeats
Nat.Chem.Biol., 1, 2005
4XDI
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BU of 4xdi by Molmil
Structure of Chlamydomonas reinhardtii THB1
Descriptor: Chlamydomonas reinhardtii THB1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Rice, S.L, Boucher, L.E, Schlessman, J.L, Bosch, J, Lecomte, J.T.J.
Deposit date:2014-12-19
Release date:2015-01-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.893 Å)
Cite:Structure of Chlamydomonas reinhardtii THB1, a group 1 truncated hemoglobin with a rare histidine-lysine heme ligation.
Acta Crystallogr.,Sect.F, 71, 2015
1WGM
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BU of 1wgm by Molmil
Solution structure of the U-box in human ubiquitin conjugation factor E4A
Descriptor: Ubiquitin conjugation factor E4A
Authors:Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the U-box in human ubiquitin conjugation factor E4A
To be Published
4CP9
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BU of 4cp9 by Molmil
Crystal structure OF lecA lectin complexed with a divalent galactoside at 1.65 angstrom
Descriptor: (4S)-N-ethyl-4-{[N-methyl-3-(1-{2-[(4-sulfanylbenzoyl)amino]ethyl}-1H-1,2,3-triazol-4-yl)-L-alanyl]amino}-L-prolinamide, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Topin, J, Varrot, A, Imberty, A, Wissinger, N.
Deposit date:2014-02-04
Release date:2014-10-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A Leca Ligand Identified from a Galactoside-Conjugate Array Inhibits Host Cell Invasion by Pseudomonas Aeruginosa.
Angew.Chem.Int.Ed.Engl., 53, 2014
6MVL
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BU of 6mvl by Molmil
Crystal structure of VISTA bound to a pH-selective antibody Fab fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Fab fragment heavy chain, Antibody Fab fragment light chain, ...
Authors:Critton, D.A.
Deposit date:2018-10-26
Release date:2019-10-23
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:VISTA is an acidic pH-selective ligand for PSGL-1.
Nature, 574, 2019
1WZ0
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BU of 1wz0 by Molmil
Solution Structure of Human SUMO-2 (SMT3B), a Ubiquitin-like Protein
Descriptor: Ubiquitin-like protein SMT3B
Authors:Zhao, C, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-21
Release date:2005-08-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of Human SUMO-2 (SMT3B), a Ubiquitin-like Protein
To be Published
3M64
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BU of 3m64 by Molmil
Human aldose reductase mutant T113V complexed with IDD393
Descriptor: (5-CHLORO-2-{[(3-NITROBENZYL)AMINO]CARBONYL}PHENOXY)ACETIC ACID, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Koch, C, Heine, A, Klebe, G.
Deposit date:2010-03-15
Release date:2011-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Ligand-induced fit affects binding modes and provokes changes in crystal packing of aldose reductase
Biochim.Biophys.Acta, 1810, 2011
3JD2
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BU of 3jd2 by Molmil
Glutamate dehydrogenase in complex with NADH, open conformation
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Glutamate dehydrogenase 1, mitochondrial
Authors:Borgnia, M.J, Banerjee, S, Merk, A, Matthies, D, Bartesaghi, A, Rao, P, Pierson, J, Earl, L.A, Falconieri, V, Subramaniam, S, Milne, J.L.S.
Deposit date:2016-03-28
Release date:2016-04-27
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Using Cryo-EM to Map Small Ligands on Dynamic Metabolic Enzymes: Studies with Glutamate Dehydrogenase.
Mol.Pharmacol., 89, 2016
5UCR
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BU of 5ucr by Molmil
Crystal Structure of a Pantoate-beta-alanine Ligase from Neisseria gonorrhoeae with bound AMPPNP and Alanine
Descriptor: ALANINE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2016-12-22
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of a Pantoate-beta-alanine Ligase from Neisseria gonorrhoeae with bound AMPPNP and Alanine
to be published

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