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7LYI
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Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAWJ9-36-3
Descriptor: 3C-like proteinase, GLYCEROL, SODIUM ION, ...
Authors:Sacco, M, Wang, J, Chen, Y.
Deposit date:2021-03-07
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Rational Design of Hybrid SARS-CoV-2 Main Protease Inhibitors Guided by the Superimposed Cocrystal Structures with the Peptidomimetic Inhibitors GC-376, Telaprevir, and Boceprevir.
Acs Pharmacol Transl Sci, 4, 2021
7LYH
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BU of 7lyh by Molmil
Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAWJ9-36-1
Descriptor: 3C-like proteinase, GLYCEROL, benzyl (1S,3aR,6aS)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)hexahydrocyclopenta[c]pyrrole-2(1H)-carboxylate
Authors:Sacco, M, Wang, J, Chen, Y.
Deposit date:2021-03-07
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Rational Design of Hybrid SARS-CoV-2 Main Protease Inhibitors Guided by the Superimposed Cocrystal Structures with the Peptidomimetic Inhibitors GC-376, Telaprevir, and Boceprevir.
Acs Pharmacol Transl Sci, 4, 2021
3OSQ
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BU of 3osq by Molmil
Maltose-bound maltose sensor engineered by insertion of circularly permuted green fluorescent protein into E. coli maltose binding protein at position 175
Descriptor: Maltose-binding periplasmic protein,Green fluorescent protein, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Echevarria, I.M, Marvin, J.S, Looger, L.L, Schreiter, E.R.
Deposit date:2010-09-09
Release date:2011-10-26
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A genetically encoded, high-signal-to-noise maltose sensor.
Proteins, 79, 2011
1P3J
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BU of 1p3j by Molmil
Adenylate Kinase from Bacillus subtilis
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Bae, E, Phillips Jr, G.N.
Deposit date:2003-04-17
Release date:2004-05-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases.
J.Biol.Chem., 279, 2004
2ZJ3
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BU of 2zj3 by Molmil
Isomerase domain of human glucose:fructose-6-phosphate amidotransferase
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1
Authors:Nakaishi, Y, Bando, M, Kondo, K, Tsuge, H.
Deposit date:2008-02-29
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of human glutamine:fructose-6-phosphate amidotransferase, a key regulator in type 2 diabetes
Febs Lett., 583, 2009
1ZGQ
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BU of 1zgq by Molmil
Crystal Structure of the Discosoma Red Fluorescent Protein (DsRed) Variant Q66M
Descriptor: DI(HYDROXYETHYL)ETHER, Red fluorescent protein drFP583
Authors:Tubbs, J.L, Tainer, J.A, Getzoff, E.D.
Deposit date:2005-04-21
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic structures of discosoma red fluorescent protein with immature and mature chromophores: linking Peptide bond trans-cis isomerization and acylimine formation in chromophore maturation.
Biochemistry, 44, 2005
2OO0
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BU of 2oo0 by Molmil
A structural insight into the inhibition of human and Leishmania donovani ornithine decarboxylases by 3-aminooxy-1-aminopropane
Descriptor: 3-AMINOOXY-1-AMINOPROPANE, ACETATE ION, Ornithine decarboxylase, ...
Authors:Dufe, V.T, Ingner, D, Khomutov, A.R, Heby, O, Persson, L, Al-Karadaghi, S.
Deposit date:2007-01-25
Release date:2007-07-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A structural insight into the inhibition of human and Leishmania donovani ornithine decarboxylases by 1-amino-oxy-3-aminopropane.
Biochem.J., 405, 2007
2GX0
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BU of 2gx0 by Molmil
Crystal structural and functional analysis of GFP-like fluorescent protein
Descriptor: fluorescent protein Dronpa
Authors:Hwang, K.Y, Nam, K.-H, Park, S.-Y, Sugiyama, K.
Deposit date:2006-05-08
Release date:2007-05-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S
Biochem.Biophys.Res.Commun., 354, 2007
3GJ2
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BU of 3gj2 by Molmil
Photoactivated state of PA-GFP
Descriptor: CHLORIDE ION, Green fluorescent protein
Authors:Henderson, J.N, Gepshtein, R, Heenan, J.R, Kallio, K, Huppert, D, Remington, S.J.
Deposit date:2009-03-07
Release date:2009-03-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and mechanism of the photoactivatable green fluorescent protein.
J.Am.Chem.Soc., 131, 2009
1GGX
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BU of 1ggx by Molmil
RED FLUORESCENT PROTEIN (FP583 OR DSRED(CLONTECH)) FROM DISCOSOMA SP.
Descriptor: PROTEIN (FLUORESCENT PROTEIN FP583)
Authors:Wall, M.A, Socolich, M.A, Ranganathan, R.
Deposit date:2000-10-05
Release date:2000-12-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for red fluorescence in the tetrameric GFP homolog DsRed.
Nat.Struct.Biol., 7, 2000
2A56
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BU of 2a56 by Molmil
fluorescent protein asFP595, A143S, on-state, 5min irradiation
Descriptor: GFP-like non-fluorescent chromoprotein FP595 chain 1, GFP-like non-fluorescent chromoprotein FP595 chain 2
Authors:Andresen, M, Wahl, M.C, Stiel, A.C, Graeter, F, Schaefer, L, Trowitzsch, S, Weber, G, Eggeling, C, Grubmueller, H, Hell, S.W, Jakobs, S.
Deposit date:2005-06-30
Release date:2005-08-16
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and mechanism of the reversible photoswitch of a fluorescent protein
Proc.Natl.Acad.Sci.Usa, 102, 2005
1UKZ
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BU of 1ukz by Molmil
SUBSTRATE SPECIFICITY AND ASSEMBLY OF CATALYTIC CENTER DERIVED FROM TWO STRUCTURES OF LIGATED URIDYLATE KINASE
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, URIDYLATE KINASE
Authors:Mueller-Dieckmann, H.-J, Schulz, G.E.
Deposit date:1994-07-13
Release date:1995-01-26
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate specificity and assembly of the catalytic center derived from two structures of ligated uridylate kinase.
J.Mol.Biol., 246, 1995
6HR1
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BU of 6hr1 by Molmil
Crystal structure of the YFPnano fusion protein
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Benoit, R.M.
Deposit date:2018-09-26
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Chimeric single alpha-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology.
Structure, 2021
5AZC
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BU of 5azc by Molmil
Crystal structure of Escherichia coli Lgt in complex with phosphatidylglycerol
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, Prolipoprotein diacylglyceryl transferase
Authors:Zhang, X.C, Mao, G, Zhao, Y.
Deposit date:2015-09-30
Release date:2016-01-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Crystal structure of E. coli lipoprotein diacylglyceryl transferase
Nat Commun, 7, 2016
6UHL
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BU of 6uhl by Molmil
Crystal Structure of C148 mGFP-scDNA-1
Descriptor: C148 mGFP-scDNA-1, UNKNOWN LIGAND
Authors:Winegar, P.W, Hayes, O.G, McMillan, J.R, Figg, C.A, Focia, P.J, Mirkin, C.A.
Deposit date:2019-09-27
Release date:2020-03-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:DNA-Directed Protein Packing within Single Crystals.
Chem, 6, 2020
6SM0
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BU of 6sm0 by Molmil
Venus 66 p-Azido-L-Phenylalanin (azF) variant, dark grown
Descriptor: Green fluorescent protein, OXYGEN MOLECULE, SULFATE ION, ...
Authors:Rizkallah, P.J, Al Maslookhi, H.S, Jones, D.D.
Deposit date:2019-08-21
Release date:2021-02-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Stalling chromophore synthesis of the fluorescent protein Venus reveals the molecular basis of the final oxidation step.
Chem Sci, 12, 2021
6F5X
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BU of 6f5x by Molmil
Crystal structure of the SYCP1 N-terminal head-to-head assembly in closed conformation
Descriptor: IODIDE ION, Synaptonemal complex protein 1, TRIETHYLENE GLYCOL
Authors:Ratcliff, M, Dunce, J.M, Davies, O.R.
Deposit date:2017-12-04
Release date:2018-06-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural basis of meiotic chromosome synapsis through SYCP1 self-assembly.
Nat. Struct. Mol. Biol., 25, 2018
6B7T
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BU of 6b7t by Molmil
Truncated strand 10-less green fluorescent protein
Descriptor: Green fluorescent protein,Green fluorescent protein
Authors:Deng, A, Boxer, S.G.
Deposit date:2017-10-05
Release date:2017-12-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural Insight into the Photochemistry of Split Green Fluorescent Proteins: A Unique Role for a His-Tag.
J. Am. Chem. Soc., 140, 2018
5OQE
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BU of 5oqe by Molmil
XFEL structure of the on state of a reversibly photoswitching fluorescent protein determined using the droplet injection method
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J.
Deposit date:2017-08-11
Release date:2017-12-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.
Int J Mol Sci, 18, 2017
6IR1
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BU of 6ir1 by Molmil
Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution
Descriptor: MCherry fluorescent protein, mCherry's nanobody LaM4
Authors:Ding, Y, Wang, Z.Y, Hu, R.T, Chen, X.
Deposit date:2018-11-09
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.919 Å)
Cite:Structural insights into the binding of nanobodies LaM2 and LaM4 to the red fluorescent protein mCherry.
Protein Sci., 30, 2021
5OOZ
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BU of 5ooz by Molmil
XFEL structure of the on state of a reversibly photoswitching fluorescent protein determined using the grease injection method
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.
Int J Mol Sci, 18, 2017
6UHN
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BU of 6uhn by Molmil
Crystal Structure of C148 mGFP-cDNA-1
Descriptor: C148 mGFP-cDNA-1, UNKNOWN LIGAND
Authors:Winegar, P.W, Hayes, O.G, McMillan, J.R, Figg, C.A, Focia, P.J, Mirkin, C.A.
Deposit date:2019-09-27
Release date:2020-03-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:DNA-Directed Protein Packing within Single Crystals.
Chem, 6, 2020
1AK2
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BU of 1ak2 by Molmil
ADENYLATE KINASE ISOENZYME-2
Descriptor: ADENYLATE KINASE ISOENZYME-2, SULFATE ION
Authors:Schlauderer, G.J, Schulz, G.E.
Deposit date:1995-12-29
Release date:1996-06-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:The structure of bovine mitochondrial adenylate kinase: comparison with isoenzymes in other compartments.
Protein Sci., 5, 1996
7RRK
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BU of 7rrk by Molmil
Crystal structure of fast switching M159E mutant of fluorescent protein Dronpa (Dronpa2)
Descriptor: Fluorescent protein Dronpa
Authors:Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
Deposit date:2021-08-09
Release date:2021-10-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.929 Å)
Cite:Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
7A8A
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BU of 7a8a by Molmil
rsGreen0.7-K206A-F145Q partially in the green-off state
Descriptor: Green fluorescent protein
Authors:De Zitter, E, Dedecker, P, Van Meervelt, L.
Deposit date:2020-08-30
Release date:2021-02-17
Last modified:2021-05-05
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*.
Angew.Chem.Int.Ed.Engl., 60, 2021

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