PDB: 92137 resultsInfo pagesStatus searchChemie searchBIRD

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8WQI	Local refinement of FEM1B bound with the C-degron of CUX1 Descriptor: Protein CASP, Protein fem-1 homolog B Authors: Chen, X, Zhang, K, Xu, C. Deposit date: 2023-10-11 Release date: 2024-04-03 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Mechanism of Psi-Pro/C-degron recognition by the CRL2 FEM1B ubiquitin ligase. Nat Commun, 15, 2024
8WCQ	Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in intermediate state Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHLORIDE ION, Proton-gated ion channel Authors: Bharambe, N, Li, Z, Basak, S. Deposit date: 2023-09-13 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment. Nat Commun, 15, 2024
1YOW	human Steroidogenic Factor 1 LBD with bound Co-factor Peptide Descriptor: PHOSPHATIDYL ETHANOL, Steroidogenic factor 1, TIF2 peptide Authors: Krylova, I.N, Sablin, E.P, Xu, R.X, Waitt, G.M, Juzumiene, D, Williams, J.D, Ingraham, H.A, Willson, T.M, Williams, S.P, Montana, V, Madauss, K.P, Moore, J, Bynum, J.M, Lebedeva, L, MacKay, J.A, Suzawa, M, Guy, R.K, Thornton, J.W. Deposit date: 2005-01-28 Release date: 2005-05-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural analyses reveal phosphatidyl inositols as ligands for the NR5 orphan receptors SF-1 and LRH-1 Cell(Cambridge,Mass.), 120, 2005
9BIY	Crystal structure of the periplasmic domain of IgaA from Escherichia coli Descriptor: Intracellular growth attenuator protein igaA, Outer membrane lipoprotein RcsF Authors: Watanabe, N, Savchenko, A, Center for Structural Biology of Infectious Diseases (CSBID), Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2024-04-24 Release date: 2024-07-17 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Molecular insights into the initiation step of the Rcs signaling pathway. Structure, 2024
8WCR	Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in open state Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHLORIDE ION, Proton-gated ion channel Authors: Bharambe, N, Li, Z, Basak, S. Deposit date: 2023-09-13 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (2.74 Å) Cite: Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment. Nat Commun, 15, 2024
2I0D	Crystal structure of AD-81 complexed with wild type HIV-1 protease Descriptor: (5S)-3-(3-ACETYLPHENYL)-N-[(1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL]-2-OXO-1,3-OXAZOLIDINE-5-CARBOXAMIDE, ACETATE ION, PHOSPHATE ION, ... Authors: Nalam, M.N.L, Schiffer, C.A, Ali, A, Reddy, K.K, Cao, H, Anjum, S.G, Rana, T.M. Deposit date: 2006-08-10 Release date: 2006-12-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Discovery of HIV-1 Protease Inhibitors with Picomolar Affinities Incorporating N-Aryl-oxazolidinone-5-carboxamides as Novel P2 Ligands. J.Med.Chem., 49, 2006
5OBT	Fully activated A. thaliana legumain isoform gamma in complex with Ac-YVAD-CMK Descriptor: Ac-YVAD-CMK, Vacuolar-processing enzyme gamma-isozyme Authors: Zauner, B.F, Dall, E, Brandstetter, H. Deposit date: 2017-06-29 Release date: 2018-04-11 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural analyses ofArabidopsis thalianalegumain gamma reveal differential recognition and processing of proteolysis and ligation substrates. J. Biol. Chem., 293, 2018
8JDW	CRYSTAL STRUCTURE OF HUMAN L-ARGININE:GLYCINE AMIDINOTRANSFERASE IN COMPLEX WITH L-ALANINE Descriptor: ALANINE, PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE) Authors: Fritsche, E, Humm, A, Huber, R. Deposit date: 1998-10-12 Release date: 1999-02-09 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study. J.Biol.Chem., 274, 1999
2I0A	Crystal Structure of KB-19 complexed with wild type HIV-1 protease Descriptor: (5S)-3-(4-ACETYLPHENYL)-N-[(1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL]-2-OXO-1,3-OXAZOLIDINE-5-CARBOXAMIDE, GLYCEROL, PHOSPHATE ION, ... Authors: Nalam, M.N.L, Schiffer, C.A, Ali, A, Reddy, K.K, Cao, H, Anjum, S.G, Rana, T.M. Deposit date: 2006-08-10 Release date: 2006-12-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Discovery of HIV-1 Protease Inhibitors with Picomolar Affinities Incorporating N-Aryl-oxazolidinone-5-carboxamides as Novel P2 Ligands. J.Med.Chem., 49, 2006
6FLR	Super-open structure of the AMPAR GluA3 N-terminal domain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor 3 Authors: Garcia-Nafria, J. Deposit date: 2018-01-27 Release date: 2018-12-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Druggability Simulations and X-Ray Crystallography Reveal a Ligand-Binding Site in the GluA3 AMPA Receptor N-Terminal Domain. Structure, 27, 2019
3FO4	Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine Descriptor: 6-chloroguanine, ACETATE ION, COBALT HEXAMMINE(III), ... Authors: Gilbert, S.D, Batey, R.T. Deposit date: 2008-12-27 Release date: 2009-06-23 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs. Structure, 17, 2009
2OM5	N-Terminal Fragment of Human TAX1 Descriptor: Contactin 2 Authors: Moertl, M, Sonderegger, P, Diederichs, K, Welte, W. Deposit date: 2007-01-20 Release date: 2007-11-20 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.07 Å) Cite: The crystal structure of the ligand-binding module of human TAG-1 suggests a new mode of homophilic interaction Protein Sci., 16, 2007
1JK4	DES 1-6 BOVINE NEUROPHYSIN II COMPLEX WITH VASOPRESSIN Descriptor: CADMIUM ION, Lys Vasopressin, NEUROPHYSIN 2 Authors: Rose, J.P, Wang, B.-C. Deposit date: 2001-07-11 Release date: 2003-02-04 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of an Unliganded Neurophysin and its Vasopressin Complex: Implications for Binding and Allosteric Mechanisms Protein Sci., 10, 2001
2IRX	Crystal Structure of the Polymerase Domain from Mycobacterium tuberculosis Ligase D with GTP and Manganese. Descriptor: DNA ligase-like protein Rv0938/MT0965, GUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION Authors: Brissett, N.C, Pitcher, R.S, Doherty, A.J. Deposit date: 2006-10-16 Release date: 2007-01-02 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure and function of a mycobacterial NHEJ DNA repair polymerase. J.Mol.Biol., 366, 2007
1H4N	H94N CARBONIC ANHYDRASE II COMPLEXED WITH TRIS Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CARBONIC ANHYDRASE II, ZINC ION Authors: Lesburg, C.A, Christianson, D.W. Deposit date: 1997-05-29 Release date: 1997-09-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Histidine --> carboxamide ligand substitutions in the zinc binding site of carbonic anhydrase II alter metal coordination geometry but retain catalytic activity. Biochemistry, 36, 1997
7QU7	ATAD2 in complex with FragLite16 Descriptor: 1,2-ETHANEDIOL, 4-bromanyl-1,8-naphthyridine, ATPase family AAA domain-containing protein 2, ... Authors: Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M. Deposit date: 2022-01-17 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem., 65, 2022
7QWO	ATAD2 in complex with FragLite6 Descriptor: 1,2-ETHANEDIOL, 4-bromanyl-1~{H}-pyridin-2-one, ATPase family AAA domain-containing protein 2, ... Authors: Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M. Deposit date: 2022-01-25 Release date: 2022-11-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem., 65, 2022
7QX1	ATAD2 in complex with FragLite7 Descriptor: 1,2-ETHANEDIOL, 4-iodanyl-3~{H}-pyridin-2-one, ATPase family AAA domain-containing protein 2, ... Authors: Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M. Deposit date: 2022-01-26 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem., 65, 2022
7QXT	ATAD2 in complex with FragLite10 Descriptor: 1,2-ETHANEDIOL, 6-bromo-1,3-dihydro-2H-indol-2-one, ATPase family AAA domain-containing protein 2, ... Authors: Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M. Deposit date: 2022-01-27 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem., 65, 2022
7QYL	ATAD2 in complex with FragLite23 Descriptor: 1,2-ETHANEDIOL, 2-(4-bromo-1H-pyrazol-1-yl)ethan-1-ol, ATPase family AAA domain-containing protein 2, ... Authors: Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M. Deposit date: 2022-01-28 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.44 Å) Cite: Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem., 65, 2022
7QUK	ATAD2 in complex with FragLite1 Descriptor: 1,2-ETHANEDIOL, 4-bromo-1H-pyrazole, ATPase family AAA domain-containing protein 2, ... Authors: Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M. Deposit date: 2022-01-18 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem., 65, 2022
1YKL	Protocatechuate 3,4-Dioxygenase Y408C mutant bound to DHB Descriptor: 3,4-DIHYDROXYBENZOIC ACID, FE (III) ION, Protocatechuate 3,4-dioxygenase alpha chain, ... Authors: Brown, C.K, Ohlendorf, D.H. Deposit date: 2005-01-18 Release date: 2005-08-16 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis Biochemistry, 44, 2005
1YKK	Protocatechuate 3,4-Dioxygenase Y408C Mutant Descriptor: FE (III) ION, Protocatechuate 3,4-dioxygenase alpha chain, Protocatechuate 3,4-dioxygenase beta chain Authors: Brown, C.K, Ohlendorf, D.H. Deposit date: 2005-01-18 Release date: 2005-08-16 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis Biochemistry, 44, 2005
1YKM	Protocatechuate 3,4-Dioxygenase Y408E mutant Descriptor: FE (III) ION, Protocatechuate 3,4-dioxygenase alpha chain, Protocatechuate 3,4-dioxygenase beta chain Authors: Brown, C.K, Ohlendorf, D.H. Deposit date: 2005-01-18 Release date: 2005-08-16 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.22 Å) Cite: Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis Biochemistry, 44, 2005
1YKN	Protocatechuate 3,4-dioxygenase Y408E mutant bound to DHB Descriptor: 3,4-DIHYDROXYBENZOIC ACID, FE (III) ION, Protocatechuate 3,4-dioxygenase alpha chain, ... Authors: Brown, C.K, Ohlendorf, D.H. Deposit date: 2005-01-18 Release date: 2005-08-16 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis Biochemistry, 44, 2005

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