Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7YD0
DownloadVisualize
BU of 7yd0 by Molmil
SARS-CoV-2 Omicron 1-RBD up spike trimer complexed with two XG005 Fab
Descriptor: Spike glycoprotein, XG005-VH, XG005-VL
Authors:Zhan, W.Q, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2022-07-02
Release date:2023-12-13
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:SARS-CoV-2 Omicron 1-RBD up spike trimer complexed with two XG005 Fab
To be Published
5TF0
DownloadVisualize
BU of 5tf0 by Molmil
Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein from Bacteroides intestinalis
Descriptor: 1,2-ETHANEDIOL, Glycosyl hydrolase family 3 N-terminal domain protein, MAGNESIUM ION
Authors:Kim, Y, Hatzos-Skintges, C, Endres, M, Babnigg, G, Joachimiak, A, MCSG, Midwest Center for Structural Genomics (MCSG)
Deposit date:2016-09-23
Release date:2016-10-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.2021 Å)
Cite:Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein from Bacteroides intestinalis
To Be Published, 2016
3WH5
DownloadVisualize
BU of 3wh5 by Molmil
Crystal structure of GH1 beta-glucosidase Td2F2
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, SODIUM ION, ...
Authors:Jo, T, Fushinobu, S, Uchiyama, T, Yaoi, K.
Deposit date:2013-08-21
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2.
Febs J., 283, 2016
7FZM
DownloadVisualize
BU of 7fzm by Molmil
Crystal Structure of human FABP4 in complex with N-(2,4-dichlorophenyl)-2-(2,6-dihydroxypyrimidin-4-yl)acetamide, i.e. SMILES n1c(cc(nc1O)CC(=O)Nc1c(cc(cc1)Cl)Cl)O with IC50=15 microM
Descriptor: Fatty acid-binding protein, adipocyte, N-(2,4-dichlorophenyl)-2-(2,6-dioxo-1,2,5,6-tetrahydropyrimidin-4-yl)acetamide, ...
Authors:Ehler, A, Benz, J, Obst, U, Obst-Sander, U, Rudolph, M.G.
Deposit date:2023-04-27
Release date:2023-06-14
Last modified:2025-08-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:A high-resolution data set of fatty acid-binding protein structures. III. Unexpectedly high occurrence of wrong ligands.
Acta Crystallogr D Struct Biol, 81, 2025
3HCE
DownloadVisualize
BU of 3hce by Molmil
Crystal Structure of E185D hPNMT in Complex With Octopamine and AdoHcy
Descriptor: 4-(2R-AMINO-1-HYDROXYETHYL)PHENOL, Phenylethanolamine N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Drinkwater, N, Martin, J.L.
Deposit date:2009-05-06
Release date:2009-08-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Molecular recognition of physiological substrate noradrenaline by the adrenaline-synthesizing enzyme PNMT and factors influencing its methyltransferase activity.
Biochem.J., 422, 2009
4OW5
DownloadVisualize
BU of 4ow5 by Molmil
Structural basis for the enhancement of virulence by entomopoxvirus fusolin and its in vivo crystallization into viral spindles
Descriptor: 1,2-ETHANEDIOL, Fusolin
Authors:Hijnen, M, Boudes, M, Aizel, K, Coulibaly, F.
Deposit date:2014-01-31
Release date:2015-03-18
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for the enhancement of virulence by viral spindles and their in vivo crystallization.
Proc.Natl.Acad.Sci.USA, 112, 2015
4CEY
DownloadVisualize
BU of 4cey by Molmil
Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor NLD
Descriptor: 1-(2-aminopyridin-4-yl)-3-[(3S)-5-{4-[(E)-(ethoxyimino)methyl]phenoxy}-3-methylpentyl]imidazolidin-2-one, SODIUM ION, VP1, ...
Authors:De Colibus, L, Wang, X, Spyrou, J.A.B, Kelly, J, Ren, J, Grimes, J, Puerstinger, G, Stonehouse, N, Walter, T.S, Hu, Z, Wang, J, Li, X, Peng, W, Rowlands, D, Fry, E.E, Rao, Z, Stuart, D.I.
Deposit date:2013-11-12
Release date:2014-02-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:More-Powerful Virus Inhibitors from Structure-Based Analysis of Hev71 Capsid-Binding Molecules
Nat.Struct.Mol.Biol., 21, 2014
5E3B
DownloadVisualize
BU of 5e3b by Molmil
Structure of macrodomain protein from Streptomyces coelicolor
Descriptor: 1,2-ETHANEDIOL, Macrodomain protein, SODIUM ION
Authors:Lalic, J, Posavec Marjanovic, M, Perina, D, Sabljic, I, Zaja, R, Plese, B, Imesek, M, Bucca, G, Ahel, M, Cetkovic, H, Luic, M, Mikoc, A, Ahel, I.
Deposit date:2015-10-02
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Disruption of Macrodomain Protein SCO6735 Increases Antibiotic Production in Streptomyces coelicolor.
J.Biol.Chem., 291, 2016
5UV4
DownloadVisualize
BU of 5uv4 by Molmil
Crystal Structure of Maize SIRK1 (sucrose-induced receptor kinase 1) kinase domain bound to AMP-PNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Putative leucine-rich repeat protein kinase family protein
Authors:Counago, R.M, Aquino, B, Massirer, K.B, Gileadi, O, Arruda, P, Structural Genomics Consortium (SGC)
Deposit date:2017-02-17
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Maize SIRK1 (sucrose-induced receptor kinase 1) kinase domain bound to AMP-PNP
To Be Published
5U9K
DownloadVisualize
BU of 5u9k by Molmil
Crystal structure of V71F mutant of the FKBP domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1)
Descriptor: Aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1)
Authors:Yadav, R.P, Gakhar, L, Liping, Y, Artemyev, N.O.
Deposit date:2016-12-16
Release date:2017-07-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Unique structural features of the AIPL1-FKBP domain that support prenyl lipid binding and underlie protein malfunction in blindness.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7JWI
DownloadVisualize
BU of 7jwi by Molmil
Crystal structure of B17.R2 TCR in complex with H2D-b-NP366
Descriptor: 1,2-ETHANEDIOL, B17.R2 TCR alpha chain, B17.R2 TCR beta chain, ...
Authors:Farenc, C, Rossjohn, J.
Deposit date:2020-08-25
Release date:2021-07-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Canonical T cell receptor docking on peptide-MHC is essential for T cell signaling.
Science, 372, 2021
4GKZ
DownloadVisualize
BU of 4gkz by Molmil
HA1.7, a MHC class II restricted TCR specific for haemagglutinin
Descriptor: 1,2-ETHANEDIOL, Alpha chain of Class II TCR, Beta Chain of Class II TCR, ...
Authors:Holland, C.J, Rizkallah, P.J, Cole, D.K, Sewell, A.K, Godkin, A.J.
Deposit date:2012-08-13
Release date:2012-11-07
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Minimal conformational plasticity enables TCR cross-reactivity to different MHC class II heterodimers.
Sci Rep, 2, 2012
2YT8
DownloadVisualize
BU of 2yt8 by Molmil
Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma)
Descriptor: Amyloid beta A4 precursor protein-binding family A member 3
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Seiki, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma)
To be Published
5UEX
DownloadVisualize
BU of 5uex by Molmil
BRD4_BD2_A-1497627
Descriptor: 17-{[ethyl(dihydroxy)-lambda~4~-sulfanyl]amino}-11,13-difluoro-2-methyl-6,7,8,9-tetrahydrodibenzo[4,5:7,8][1,6]dioxacyclododecino[3,2-c]pyridin-3(2H)-one, Bromodomain-containing protein 4
Authors:Park, C.H.
Deposit date:2017-01-03
Release date:2017-05-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Fragment-Based, Structure-Enabled Discovery of Novel Pyridones and Pyridone Macrocycles as Potent Bromodomain and Extra-Terminal Domain (BET) Family Bromodomain Inhibitors.
J. Med. Chem., 60, 2017
5U87
DownloadVisualize
BU of 5u87 by Molmil
NMR structure of the precursor protein PawS1 comprising SFTI-1 and a seed storage albumin
Descriptor: Preproalbumin PawS1
Authors:Franke, B, James, A.M, Mobli, M, Colgrave, M.L, Mylne, J.S, Rosengren, K.J.
Deposit date:2016-12-14
Release date:2017-03-01
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:NMR structure of the precursor protein PawS1 comprising SFTI-1 and a seed storage albumin
to be published
3W8R
DownloadVisualize
BU of 3w8r by Molmil
Mutant structure of Thermus thermophilus HB8 uridine-cytidine kinase
Descriptor: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Uridine kinase
Authors:Tomoike, F, Nakagawa, N, Masui, R, Kuramitsu, S.
Deposit date:2013-03-21
Release date:2014-03-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Indispensable residue for uridine binding in the uridine-cytidine kinase family.
Biochem Biophys Rep, 11, 2017
3QW1
DownloadVisualize
BU of 3qw1 by Molmil
Crystal structure of the Zn-RIDC1 complex stabilized by BMH crosslinks
Descriptor: 1-methylpyrrolidine-2,5-dione, Cytochrome cb562, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Salgado, E.N, Tezcan, F.A.
Deposit date:2011-02-26
Release date:2011-06-22
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Templated construction of a zn-selective protein dimerization motif.
Inorg.Chem., 50, 2011
1ND3
DownloadVisualize
BU of 1nd3 by Molmil
The structure of HRV16, when complexed with pleconaril, an antiviral compound
Descriptor: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE, ZINC ION, coat protein VP1, ...
Authors:Zhang, Y, Simpson, A.A, Bator, C.M, Chakravarty, S, Pevear, D.C, Skochko, G.A, Tull, T.M, Diana, G, Rossmann, M.G.
Deposit date:2002-12-06
Release date:2003-12-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds
J.Virol., 78, 2004
4D0C
DownloadVisualize
BU of 4d0c by Molmil
COMPLEX OF A B21 CHICKEN MHC CLASS I MOLECULE AND A 10MER CHICKEN PEPTIDE
Descriptor: 1,2-ETHANEDIOL, 10MER PEPTIDE, BETA-2-MICROGLOBULIN, ...
Authors:Chappell, P.E, Roversi, P, Harrison, M.C, Mears, L.E, Kaufman, J.F, Lea, S.M.
Deposit date:2014-04-25
Release date:2015-05-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide binding.
Elife, 4, 2015
3GPI
DownloadVisualize
BU of 3gpi by Molmil
Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus
Descriptor: 1,2-ETHANEDIOL, NAD-dependent epimerase/dehydratase
Authors:Ramagopal, U.A, Morano, C, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-03-23
Release date:2009-04-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus
To be published
1NCR
DownloadVisualize
BU of 1ncr by Molmil
The structure of Rhinovirus 16 when complexed with pleconaril, an antiviral compound
Descriptor: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE, MYRISTIC ACID, ZINC ION, ...
Authors:Zhang, Y, Simpson, A.A, Bator, C.M, Chakravarty, S, Pevear, D.C, Skochko, G.A, Tull, T.M, Diana, G, Rossmann, M.G.
Deposit date:2002-12-05
Release date:2003-12-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds
J.Virol., 78, 2004
4U0V
DownloadVisualize
BU of 4u0v by Molmil
Crystal structure of YvoA from Bacillus subtilis in complex with glucosamine-6-phosphate
Descriptor: 1,2-ETHANEDIOL, 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, HTH-type transcriptional repressor YvoA
Authors:Fillenberg, S.B, Muller, Y.A.
Deposit date:2014-07-14
Release date:2015-01-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.051 Å)
Cite:Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR.
Nucleic Acids Res., 43, 2015
4KIL
DownloadVisualize
BU of 4kil by Molmil
7-(4-fluorophenyl)-3-hydroxyquinolin-2(1H)-one bound to influenza 2009 H1N1 endonuclease
Descriptor: 1,2-ETHANEDIOL, 7-(4-fluorophenyl)-3-hydroxyquinolin-2(1H)-one, MANGANESE (II) ION, ...
Authors:Bauman, J.D, Patel, D, Das, K, Arnold, E.
Deposit date:2013-05-02
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:3-Hydroxyquinolin-2(1H)-ones As Inhibitors of Influenza A Endonuclease.
ACS Med Chem Lett, 4, 2013
6LUA
DownloadVisualize
BU of 6lua by Molmil
Cis-mutant R349A of the central AAA+ domain of the flagellar regulatory protein FlrC
Descriptor: 1,2-ETHANEDIOL, Flagellar regulatory protein C
Authors:Dasgupta, J, Chakraborty, S.
Deposit date:2020-01-27
Release date:2020-03-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Oligomerization of flagellar regulatory protein FlrC is essential for cis-mediated ATP binding while c-di-GMP prefers its monomeric state
To Be Published
1K6F
DownloadVisualize
BU of 1k6f by Molmil
Crystal Structure of the Collagen Triple Helix Model [(Pro-Pro-Gly)10]3
Descriptor: collagen triple helix
Authors:Berisio, R, Vitagliano, L, Mazzarella, L, Zagari, A.
Deposit date:2001-10-16
Release date:2002-01-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of the collagen triple helix model [(Pro-Pro-Gly)(10)](3)
Protein Sci., 11, 2002

245663

건을2025-12-03부터공개중

PDB statisticsPDBj update infoContact PDBjnumon