PDB: 45566 resultsInfo pagesStatus searchChemie searchBIRD

---

2OZQ	Crystal Structure of apo-MUP Descriptor: CADMIUM ION, Novel member of the major urinary protein (Mup) gene family, SODIUM ION Authors: Dennis, C.A, Homans, S.W, Phillips, S.E.V, Syme, N.R. Deposit date: 2007-02-27 Release date: 2008-01-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Origin of heat capacity changes in a "nonclassical" hydrophobic interaction. Chembiochem, 8, 2007
5U63	Crystal structure of putative thioredoxin reductase from Haemophilus influenzae Descriptor: ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ... Authors: Michalska, K, Maltseva, N, Mulligan, R, Grimshaw, S, Joachimiak, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2016-12-07 Release date: 2016-12-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Crystal structure of putative thioredoxin reductase from Haemophilus influenzae To Be Published
5U8H	DNA Polymerase Beta G231D crystallized in PEG 400 Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ... Authors: Eckenroth, B.E, Doublie, S. Deposit date: 2016-12-14 Release date: 2017-04-26 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.155 Å) Cite: Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta. Biochemistry, 56, 2017
5UD1	Class II fructose-1,6-bisphosphate aldolase H180Q variant of Helicobacter pylori Descriptor: Fructose-bisphosphate aldolase, SODIUM ION, ZINC ION Authors: Jacques, B, Sygusch, J. Deposit date: 2016-12-23 Release date: 2018-04-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.795 Å) Cite: Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases. J. Biol. Chem., 293, 2018
7RQU	Cryo-EM structure of the full-length TRPV1 with RTx at 4 degrees Celsius, in a closed state, class I Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol, SODIUM ION, ... Authors: Kwon, D.H, Suo, Y, Lee, S.-Y. Deposit date: 2021-08-08 Release date: 2022-06-01 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: Vanilloid-dependent TRPV1 opening trajectory from cryoEM ensemble analysis. Nat Commun, 13, 2022
4R60	Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ... Authors: Kumar, A, Ghosh, B, Are, V.N, Jamdar, S.N, Makde, R.D, Sharma, S.M. Deposit date: 2014-08-22 Release date: 2014-09-17 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris to be published
4R64	Binary complex crystal structure of E295K mutant of DNA polymerase Beta Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2014-08-22 Release date: 2014-10-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Substrate-induced DNA Polymerase beta Activation. J.Biol.Chem., 289, 2014
7R5O	1.58 A STRUCTURE OF HUMAN APOFERRITIN OBTAINED FROM TITAN KRIOS 2 AT eBIC, DLS UNDER COMMISSIONING SESSION CM26464-2 Descriptor: Ferritin heavy chain, N-terminally processed, SODIUM ION Authors: Clare, D.K. Deposit date: 2022-02-11 Release date: 2022-06-22 Last modified: 2023-07-05 Method: ELECTRON MICROSCOPY (1.6 Å) Cite: Application of super-resolution and correlative double sampling in cryo-electron microscopy. Faraday Disc.Chem.Soc, 240, 2022
5TWS	Post-catalytic complex of human Polymerase Mu (H329A) with newly incorporated UTP Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ... Authors: Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C. Deposit date: 2016-11-14 Release date: 2017-07-05 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu. Nucleic Acids Res., 45, 2017
5TXQ	Crystal structure of the A143D variant of catalase-peroxidase from B. pseudomallei Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Catalase-peroxidase, OXYGEN MOLECULE, ... Authors: Loewen, P.C. Deposit date: 2016-11-17 Release date: 2017-04-26 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The Catalase Activity of Catalase-Peroxidases Is Modulated by Changes in the pKa of the Distal Histidine. Biochemistry, 56, 2017
5TYF	DNA Polymerase Mu Product Complex, 10 mM Mg2+ (270 min) Descriptor: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Jamsen, J.A, Wilson, S.H. Deposit date: 2016-11-19 Release date: 2017-08-30 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.971 Å) Cite: Time-lapse crystallography snapshots of a double-strand break repair polymerase in action. Nat Commun, 8, 2017
4R66	Ternary complex crystal structure of E295K mutant of DNA polymerase Beta Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2014-08-22 Release date: 2014-10-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Substrate-induced DNA Polymerase beta Activation. J.Biol.Chem., 289, 2014
5K9H	Crystal structure of a glycoside hydrolase 29 family member from an unknown rumen bacterium Descriptor: 0940_GH29, GLYCEROL, SODIUM ION, ... Authors: Summers, E.L, Arcus, V.L. Deposit date: 2016-05-31 Release date: 2016-09-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.029 Å) Cite: The structure of a glycoside hydrolase 29 family member from a rumen bacterium reveals unique, dual carbohydrate-binding domains. Acta Crystallogr.,Sect.F, 72, 2016
4QQS	Crystal structure of a thermostable family-43 glycoside hydrolase Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Glycoside hydrolase family 43, SODIUM ION Authors: Hassan, N, Kori, L.D, Patel, B.K.C, Divne, C, Tan, T.C. Deposit date: 2014-06-29 Release date: 2015-03-11 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.1 Å) Cite: High-resolution crystal structure of a polyextreme GH43 glycosidase from Halothermothrix orenii with alpha-L-arabinofuranosidase activity. Acta Crystallogr F Struct Biol Commun, 71, 2015
5U2R	PRECATALYTIC TERNARY COMPLEX OF HUMAN DNA POLYMERASE BETA WITH GAPPED DNA SUBSTARTE, INCOMING L-DCTP AND CA2+ Descriptor: 10- MER PRIMER, 16- MER TEMPLATE, 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one, ... Authors: Vyas, R, Suo, Z. Deposit date: 2016-11-30 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for the D-stereoselectivity of human DNA polymerase beta. Nucleic Acids Res., 45, 2017
2R20	Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.3 A (Br2) Descriptor: MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*UP*UP*(5BU)P*GP*AP*AP*AP*CP*GP*C)-3'), SODIUM ION Authors: Timsit, Y, Bombard, S. Deposit date: 2007-08-24 Release date: 2007-09-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.3 Å) Cite: The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction. Rna, 13, 2007
5KAY	Structure of Spelter bound to Zn2+ Descriptor: SODIUM ION, Spelter, ZINC ION Authors: Guffy, S.L, Der, B.S, Kuhlman, B. Deposit date: 2016-06-02 Release date: 2016-08-03 Last modified: 2019-11-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Probing the minimal determinants of zinc binding with computational protein design. Protein Eng.Des.Sel., 29, 2016
5U8I	DNA Polymerase Beta S229L crystallized in PEG 400 Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ... Authors: Eckenroth, B.E, Doublie, S. Deposit date: 2016-12-14 Release date: 2017-04-26 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta. Biochemistry, 56, 2017
5U9J	Crystal structure of the FKBP domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) complexed with geranyl geranyl pyrophoshate Descriptor: Aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1), GERAN-8-YL GERAN, ISOPROPYL ALCOHOL, ... Authors: Yadav, R.P, Gakhar, L, Liping, Y, Artemyev, N.O. Deposit date: 2016-12-16 Release date: 2017-07-26 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Unique structural features of the AIPL1-FKBP domain that support prenyl lipid binding and underlie protein malfunction in blindness. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6I9S	hRobo2 Extracellular Domains 2-3 Descriptor: Roundabout homolog 2, SODIUM ION Authors: Barak, R, Isupov, N.M, Opatowsky, Y. Deposit date: 2018-11-25 Release date: 2019-03-13 Last modified: 2019-04-17 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Structural Principles in Robo Activation and Auto-inhibition. Cell, 177, 2019
6IAM	Modulating Protein-Protein Interactions with Visible Light Peptide Backbone Switches Descriptor: POTASSIUM ION, SER-ALA-ARG-ALA-XY5-VAL-HIS-LEU-ARG-LYS-SER-ALA, SODIUM ION, ... Authors: Werel, L, Essen, L.-O. Deposit date: 2018-11-27 Release date: 2019-02-06 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Modulating Protein-Protein Interactions with Visible-Light-Responsive Peptide Backbone Photoswitches. Chembiochem, 20, 2019
5UC6	Structural insights into IL-1 alpha recognition by a naphthyl-modified aptamer that mimics IL-1RI Domain III Descriptor: DNA (5'-D(*CP*G)-R(P*(85Y))-D(P*GP*AP*G)-R(P*(85Y)P*(85Y))-D(P*A)-R(P*(85Y))-D(P*GP*GP*G)-R(P*(85Y)P*(85Y))-D(P*AP*GP*AP*G)-R(P*(85Y))-D(P*CP*GP*(ATD))-3'), Interleukin-1 alpha, MAGNESIUM ION, ... Authors: Ren, X, Pyle, A. Deposit date: 2016-12-21 Release date: 2017-10-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis for IL-1 alpha recognition by a modified DNA aptamer that specifically inhibits IL-1 alpha signaling. Nat Commun, 8, 2017
5KDP	E491A mutant of choline TMA-lyase Descriptor: Choline trimethylamine-lyase, MALONATE ION, SODIUM ION Authors: Funk, M.A, Drennan, C.L. Deposit date: 2016-06-08 Release date: 2016-09-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Molecular Basis of C-N Bond Cleavage by the Glycyl Radical Enzyme Choline Trimethylamine-Lyase. Cell Chem Biol, 23, 2016
5UD2	Class II fructose-1,6-bisphosphate aldolase H180Q variant of Helicobacter pylori with DHAP Descriptor: 1,3-DIHYDROXYACETONEPHOSPHATE, Fructose-bisphosphate aldolase, SODIUM ION, ... Authors: Jacques, B, Sygusch, J. Deposit date: 2016-12-23 Release date: 2018-04-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.775 Å) Cite: Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases. J. Biol. Chem., 293, 2018
5UCS	Class II fructose-1,6-bisphosphate aldolase E149A variant of Helicobacter pylori Descriptor: Fructose-bisphosphate aldolase, SODIUM ION, ZINC ION Authors: Jacques, B, Sygusch, J. Deposit date: 2016-12-22 Release date: 2018-04-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.408 Å) Cite: Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases. J. Biol. Chem., 293, 2018

<167168169170171172173174175176177178179180181182>